Pter052471.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987328.1:158151151-158163308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.52 1.7e+02 5.9 0.5 1 23 439 462 439 462 0.94 2 12 0.77 2.5e+02 5.4 4.4 1 23 567 589 567 589 0.92 3 12 0.033 11 9.7 0.5 1 21 623 643 623 644 0.92 4 12 3 9.8e+02 3.5 3.9 1 23 671 693 671 693 0.98 5 12 0.05 16 9.1 3.6 1 23 773 795 773 795 0.97 6 12 1.2 4e+02 4.8 0.3 2 23 889 910 888 910 0.95 7 12 5.1 1.7e+03 2.8 0.8 2 20 989 1007 988 1009 0.92 8 12 9.4e-05 0.031 17.7 1.0 2 23 1063 1084 1062 1084 0.97 9 12 0.019 6.3 10.4 0.2 2 23 1088 1109 1087 1109 0.93 10 12 1.1 3.7e+02 4.9 0.3 1 23 1143 1167 1143 1167 0.96 11 12 0.00078 0.26 14.8 0.1 3 23 1208 1229 1206 1229 0.96 12 12 0.0089 2.9 11.5 0.0 2 23 1268 1290 1267 1290 0.96
Sequence Information
- Coding Sequence
- ATGAATGAAAACCGAGATGAAAGCACACCCAGCAAAATGAGTAAAGTTACTATTTTGTCAGATATTGTGCTTAAACCTTTGAAAGGTGCTCCACCACAAGATGTGAACCTTTCAGTTATGCCTCCGTTGACTCCTTTGgctaacaaaataaaaatagctGATGCAAGTCCAGGAAGTAATAATACCCACAATGTTAGTATTGACAACAATCAGAAAACCCTTTCAACTACTAATGCATGCCTTGCCAAAGCTCCTGCTACAGAGAAGTTATTAAAACGAAAAATGGTTAATCACATCAATCAGCAAGATACTGCAAAGAAGCTAAAGTCACTTTCTCCAGATAAGCAATTAAAAACAAGAGAAAATGATCTTAATGAAGAAAATACAGTTTTCAACTATATGACTGGAGCATATGAGAGTGTAATCAGGAAAGAACTTGAAAAAATCATTGGATCTCCAGAAAAAAATGAAGACGTAAAAGATGAAATAACAATACaggaaacaattattttaaaggAAGAAATCCACCTAAAAGTTGAAGAATCTGAGGACTCAAAACAAGGAGTTAAGCTGGTAACTAAACCCGACCGAGACTCCATATTGGACAATAATAAACCAACACTAACCATTGATTTAACTGATGACGATGAAACCGAGCCTAATATAAGTATACGAAACAAGATTTTCATACAAAACGTCGTGTCCTTGCAAAACGCGATAAATTCGGATAAACTAAAATTTGACCCTAAAATTCATAACGTAGTTAAGCAAAATCCTACCAGCCCTGTGAAAAATTTACAATACAGCGTAAATATGATAAAAAGTCCAAACGATACTAAACGCGGTCAGCCCGTAATTTTGTTGGTTCAGAATAATCCGAACTTTCACGTGCCCCAGAATACTGCATCTGCGATTACACCAATTAACAAAAATTTGCAGGGAAATCTTGTCCTGATatcaaataatttaaatgttGGTACCAATATTACATTACCAAATAAACAGTCACCTGGTAAGGTAACAAATCTGGTGCTTCAAACTAATCATACGTCTGTAGGAAATGAAGAAACTTCCCTACAACCACGGAAGACTTTTTTTATTGGGCCCAAAAATGTACCGATGAATTTAGTGGCTAATGTAACTTCAGATATTTCATCTAACTCTGATAAAAGTTTGGTAAATAAACCCGTAAACGCTTCTGCGTCACAAAGTAGTATTTCCACACAAAACAAGCACACTTCTGCAAAAGATTCCACACAAAACAACCAAACTTCTGCACAAAACATTCAAACACAACATTCCACCAACGATAACTTTACTTGCGATACTTGTCTGTATAAAGGCCGTTCGAAACGAGAGCTGGCTCTCCACATATTTAACGCACATCTAAAAGACGATTTCGAACTGaatttaaaatgtaaaatgtGCAATTTTGAAACGGATGTCCAAGGTGTAATGGAAACACACGATTTGGGTCATGGAAATCGATCCCAAAATCAAGAAGACAACGTTCGTCTGAGCAACAATGTCGAAATAAGGATAAGACCTGCTGCTAAACAACCTGAAGTATGTCCAGAAGCTTCTGCTGATAATGTGGTTCATAAAAATTCCCCCGATTTCCCCCCCGTTGATATTGTTGAACTTTCAGACTCAGAAGACGAGTTATCGAGGAAAAATTTAAGAGAAGTTTCCATAATATATCGATGCTTCGATTGCAGCTTCAAAACTTCCAACAAACAGTTCCTGCAACATCATGCAGTGCAACATCCTGGAAGCAACTTTCAGTGTTCCAAGCATGTTGCCTTGACTGACACGTGCCTGGAATGCGAATACAAACGCTGTTTGATCTGTTTGAAAACAAAAacgtttttatgcaaaaagtGCGGCTACACCGTGGATAGGAAATCATTATTTGACGTGCACCTGAAAAATCAGTGTGGTCGCCTGACAAATAATCAAAGGCCGCTATTAAGCAGCAATTCGGAGCAGGAAAAGAGCGCTGCCGATTTGTTCAAGTGTTTTCACTGCACCTACATTGCTAGTAAGTTGGCATTTTTGAAGATACACTCGAAAAAACATTTCGGAGGTGCTTTCGCGTGCGATATACATAAATCCAAGAGCTTAAGGACTTGTAGCAAGTGTATCTACGAAATGGTCCTGACagataataaagttaaaaaagaaaagaaagaatcTTTGAAAACAGACATTTCCATGTCGAAAAAAGGCAATAAAAGTAAAAAGAAATTACCTGGTAACAACAGGAGAGTAACAATTCGGAGCAGCGACAGTGAAACAGAAGAAATTTCCGGCGATTTTCAATGTTTCCATTGTACGTACGTTACTACGACACGATTTTTGTTAAAATTGCACGCTGCCAAACATTGCAAACAAACCTTCAAATGTGATGTACACGCGGCTTCTGTCGACCGAGCCTGTCTCAAGTGCGTCTATGCTGTCCTGCTCAAAGAACTCAAAAATGACATACTGCTCTGTCGCGATTGTGGATTTAGAACGTTGAGACCGCCCACTTTCGACAGGCATATATCTAAAAAGGAAAATTGTGAGAAATATCGCGTACAATTGGCGGAGAATGGAGACAGTTCTAAAAGCGATTCGGAAACAAATTGTAATGAGGATCCAACAATCTGTGCAGAAGTCTTAATTTGCGCTAAATGTAACTTCAGGGCTTCGAATCAGGAAACGTTTGTGCTGCATGAACAAATGCATGATGTTGCTAGGAATACAACTACTAAACTAACTGATAATCAATCAGCTGTTCCGTTGAACTGTTTTGACTGTAACGAATTTTGCACGGAAGaccgagaaaaactaaaaaatcacgCTGTTATGCACAACAAAAAGACTTTCGCTTGCGACAAACACTCATCAGCAGAAAGTGCGCCTGATTGTGGAAAATGCATTTACTTCTTAATCAAACAAGATGTAGAACGAAACATAAAAGTGTGCAAAAGATGCGACTTTAAAACCATACAAACAGACTTATTTGTACGGCATAAATCATCTAAATGTAAAGACCACATGAAAGAAGATGATGATGATTATAATCCCGAGTCAGGGCTAGAAAATTATAGCAGTATAGGAAGGCCCAACTTAAGAAGAAAAGTAAAATTGCTTAACTCCGACGGGGACTCTAAAAGTCCAAATCAAGAACTTAAAAACCTTGAGTGTTTTGATTGTGGTCGGAAATGTGCCACTCGGTCTGAGCTAGAATCGCACCTGATAACTCACCTGCCCAATAAGTGTTACGATTGTGGGGCGAGATTTACTTCAAGGTTAAAGTTGTGGCAGCACGCTGCAGGCCACAAAAGTAACTTCCACTGTACCGATCACAAAGACAACAGTCAAAATGGTTGCGACCATTGTTTCTACGCGTTCATTCAAGAAACCATTCGTCGTCACTACTTCAGGTGTTTTGATTGTCCTAGTCGAATCTTTATGACTATATTAGACTTGATGGATCACATGGAAACCAAACATAGAGAAAGCAAGTTTAAGTGCGATTTACACGAGAAGGGTGATGCAGCGAGCTGCGACAGGTGCAGATACTCGTATATAATCGGCGGGTTGTCGAAAAAGCTAGTTTTTTCTTGCGCCGATTGTAAAGGGTGCGTTTATCCATTTGCCACGTTGGGAAATTTAAAGAGACATATTACGAGCAAACATTGGCATAGCGAAACGAGATGCTTATATCATATTGATAATAGAACGATTTTCGAGTGTAAGGCGTGTCTTTTTGAGAAAATTTTAGTTAATATCCGATCAAAGGAGAACACATTGACGTGTTCCGAGTGCCCTCTTCCTTATCTTACCAGAGGACAGTTGAAAGCCCACATTCGAATTGTGCACGAAGGGAGTACGTTTCAGTGTACCATCCACACCCTGGGTGACATAAATGAGAAGTGTACTATGTGTGCATATGAAAACATTGTAGTTCTCATGAACTCATAG
- Protein Sequence
- MNENRDESTPSKMSKVTILSDIVLKPLKGAPPQDVNLSVMPPLTPLANKIKIADASPGSNNTHNVSIDNNQKTLSTTNACLAKAPATEKLLKRKMVNHINQQDTAKKLKSLSPDKQLKTRENDLNEENTVFNYMTGAYESVIRKELEKIIGSPEKNEDVKDEITIQETIILKEEIHLKVEESEDSKQGVKLVTKPDRDSILDNNKPTLTIDLTDDDETEPNISIRNKIFIQNVVSLQNAINSDKLKFDPKIHNVVKQNPTSPVKNLQYSVNMIKSPNDTKRGQPVILLVQNNPNFHVPQNTASAITPINKNLQGNLVLISNNLNVGTNITLPNKQSPGKVTNLVLQTNHTSVGNEETSLQPRKTFFIGPKNVPMNLVANVTSDISSNSDKSLVNKPVNASASQSSISTQNKHTSAKDSTQNNQTSAQNIQTQHSTNDNFTCDTCLYKGRSKRELALHIFNAHLKDDFELNLKCKMCNFETDVQGVMETHDLGHGNRSQNQEDNVRLSNNVEIRIRPAAKQPEVCPEASADNVVHKNSPDFPPVDIVELSDSEDELSRKNLREVSIIYRCFDCSFKTSNKQFLQHHAVQHPGSNFQCSKHVALTDTCLECEYKRCLICLKTKTFLCKKCGYTVDRKSLFDVHLKNQCGRLTNNQRPLLSSNSEQEKSAADLFKCFHCTYIASKLAFLKIHSKKHFGGAFACDIHKSKSLRTCSKCIYEMVLTDNKVKKEKKESLKTDISMSKKGNKSKKKLPGNNRRVTIRSSDSETEEISGDFQCFHCTYVTTTRFLLKLHAAKHCKQTFKCDVHAASVDRACLKCVYAVLLKELKNDILLCRDCGFRTLRPPTFDRHISKKENCEKYRVQLAENGDSSKSDSETNCNEDPTICAEVLICAKCNFRASNQETFVLHEQMHDVARNTTTKLTDNQSAVPLNCFDCNEFCTEDREKLKNHAVMHNKKTFACDKHSSAESAPDCGKCIYFLIKQDVERNIKVCKRCDFKTIQTDLFVRHKSSKCKDHMKEDDDDYNPESGLENYSSIGRPNLRRKVKLLNSDGDSKSPNQELKNLECFDCGRKCATRSELESHLITHLPNKCYDCGARFTSRLKLWQHAAGHKSNFHCTDHKDNSQNGCDHCFYAFIQETIRRHYFRCFDCPSRIFMTILDLMDHMETKHRESKFKCDLHEKGDAASCDRCRYSYIIGGLSKKLVFSCADCKGCVYPFATLGNLKRHITSKHWHSETRCLYHIDNRTIFECKACLFEKILVNIRSKENTLTCSECPLPYLTRGQLKAHIRIVHEGSTFQCTIHTLGDINEKCTMCAYENIVVLMNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -