Pter037656.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987327.1:194135173-194140552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00083 0.27 14.7 3.6 1 23 157 179 157 179 0.97 2 19 1.6 5.2e+02 4.4 4.2 1 23 217 240 217 240 0.94 3 19 1.4 4.6e+02 4.6 0.5 2 23 261 283 261 283 0.96 4 19 0.71 2.3e+02 5.5 0.2 3 23 366 387 364 387 0.96 5 19 0.057 19 9.0 2.6 1 23 416 439 416 439 0.95 6 19 0.0075 2.4 11.7 1.7 1 23 507 529 507 529 0.96 7 19 2.1 6.9e+02 4.0 4.3 2 23 535 556 534 556 0.94 8 19 1.4 4.5e+02 4.6 3.4 1 23 564 586 564 586 0.89 9 19 5.4 1.8e+03 2.7 1.0 1 14 615 628 615 637 0.80 10 19 0.61 2e+02 5.7 2.2 2 23 646 667 646 667 0.94 11 19 0.042 14 9.4 3.7 1 23 723 745 723 745 0.98 12 19 0.00095 0.31 14.6 0.0 1 23 866 888 866 888 0.98 13 19 0.2 64 7.3 4.7 2 21 946 965 946 966 0.93 14 19 2.1 7e+02 4.0 0.3 1 23 979 1001 979 1001 0.97 15 19 0.0029 0.96 13.0 3.4 1 23 1010 1032 1010 1032 0.97 16 19 0.039 13 9.5 2.0 1 21 1043 1063 1043 1064 0.94 17 19 0.026 8.4 10.0 0.9 1 23 1085 1107 1085 1107 0.98 18 19 0.12 38 8.0 4.9 1 23 1205 1228 1205 1228 0.96 19 19 0.0085 2.8 11.6 2.2 1 23 1236 1259 1236 1259 0.96
Sequence Information
- Coding Sequence
- ATGATTGAAGTATACGCATGCCTATGCTATATCCAACAGCTTCTAAAGCAAGCAGGTTTCATTTTATATTTCACGAGTTTAAATAATGCGTTGTTGAGCAGCGACAGCAACGACGACGGCGACGATAACAGAAGTCATCGAACCGCCAAGTACGTCGAAATAAACAGCGACAATACTAATGCCACTTTATACGGAGAAAAGTCACATTCGTCCATAATAATAACGAGCGTAGAGTCCGTTGTTTACGGTTCAGAAAATAATTCGTTAATCATTGACGATTTGGAAAGCACTGCTTTAGTTGATAGTTTAGAAAACACTGATTCAATTGGCTGTTTAGAAAATTATTCTTTTATTGATAATTCTGAACATGTTACTTATCAAAGTGAAGAAAATGCCACTGCTGAAGgtttaaaaagtttaaagttaaattcagTTTTATATGCGAAAGAATTACTGTTCAAACAAACATTTAAATGTCATATTTGTCCGTTTTCTTCTAAAACAAGGTTCTCTCTGTCTAGACATATGGGTTCGCACTCAACTATCGATATTAATGCTAAaatgaatgatgatgatgataataatacCGCGTCACAGGCCGATACTCTTTCAGCAACTACAGACCTTAAAATACCAAAATCTTATTTgtttaaatgcaatttttgttctttttcttcaaaaattcGATTCGCCCTACGCAGACACCATATTTTGACTCACGCGAACCTGACGAAAAAAACTCTACACTCAGCCGATGCAGAGTCATCAATCAAAATTGCTAAATGCAAACGTTGCTTGTTTGTCGCTAAAAACAACACAGGCTTAGCCAATCACGTGAGGTTGCTGCATTCAGCTAAAAACAGAACAGGTTTGGCGCATCACCTGAGAATTACTCATAAAGATAAAATTGGAGTAAAGCGCCAATTATGTGATAAAATGATGAAACAAAAAAACTTGCCAGAACATAAGTATGTATGTTCTgagataataaaaaataaagatatacCGGAGAATCAAATCGAGGTTATGGCAAGCGAAATGACAAAATTAACCAATCAAATCCCTACTAACTCGTCAAATGTTTGCGTTTCAAACTGTAAATATTGCTCGTTTGTTGCTAAGAGTAAAGCGGGCATAGTTAATCACGTAAGGATGATTCATAAAAATGTATTTCCTATATATAGTAGTACTAACGATAACAAAGAATCTTCCCTTCCAGATAATTTCGCACCCAATACTAAGATATTTAAATGCAAGTATTGTTCTTTTTCTTCGAAAATCCGATTCGCATTGCGTAGACATCAAACTTTAATTCACACGAGGAAAAATACAGAAGAAATATTTAACAGTAAATCTACCAGGGATCAAGGTGCAAGCATATATAAAAACGAAGTAAACAAATTAAGAAAAAGTCAGTCTGATACTGCATTTCTATGCAAATTTTGTTCGTTTAGTAGCGATTATAAATCGAGAATTACACAGCACACGTTGTTGCATACGGAATTGAAACGGAAAATTCACAAATGCACAGATTGTGATTACTCATCGACTAAATATGCTTTATCGAGACACATAACGTCGGTACATCGTTTAACTATGCTTCACTGCGAGTTTTGTTCGTATACAAGCAATCAGAAGGTACACATACAAAGACACACTTTGCTACATACCAAGTTTGAACAGAAAATTTACAAATGTAAAGAATGTAATTACAAGTCAACTAAATGTGCACTTTCAAGACACGCCAGCGAGAGACACGGAAAGTATTTAGGGTTTAATAGAAAAACCGGCGACAGGATGCAAAAATTTGAACCAAAGCAGTTTAATACTAATTTAAGTATCTTTCAATGCAGTTATTGTTCCTTTAGTACCAAACATGCGGAAGTGATACCGAAACACACATTGTTACATACGAAATTCAATcagaaaattgaaaaatgtaaacattgtaATTACAGGGCCACTAAATATGCACTTTCAAGACACACTAACGCGATACATATGAAATCGATACAAAGTGCCAAAACTAACTCAATTAAAACAACTAAAGATGCTAAATCTAAAGATACTGAAGATGCTGTTGATTTACAGACAAATAAGCCTCTTGAAAATACGACGGatgataaagatgtaaaattaagTGAAGATCAATTGAATCGCTCCAGATTTCAATGCACTTTATGCTCGCATAAATCTCAGAATCTGTCAAATTTTAGGGTGCACTTGAATATGCATAAGAAACACCTAGATTTAGCTTATCAATgcaagaaatattattttaaaacggCCAAGGGGTTGGTTAAAAAACATGTCAGCCATTTTCATAGGGacataaattacaaatttaaaaatgaatatactGTGGGCAAAAATGTCAAGGATTTAAGAcaacttaataaaaataaacgtTTGGTTGAACCATCAACTAGCGAATATTCTTTAAGTGAATGTTTGTCTGGTAACAAAGGGGCATCTAGTTCGGCAGGACATATATTAGATTTCAAAAGCAACAGAACGGTAACGGGTGTAAGCGCAGAGAACTCCCAGGAGTTAAGTACAAAGCGACATTCAAATAGTGATTTAAGTACTGTGCTTTATGTCTGCGAGATATGCGGTTATGAAGCGATTCAAAAAGATACATTAATCGCTCACAAGTTGACGCATGTCGGTACAATCGTGACAATAGACGTAAACGAGAAACGCTCAGATGAAAAATATGTAACGGGCAACAAGGGCGGTGTTCCGATTAAACCTAAAAAAAccatttttgaaaataatgtcGTCTCTAAGGGAAGACAGGCAAGAGAACGAATTGTACTTCAACACGATAAAAGACAATGTTGCACATGTAAACGGGCCTTTGACAATTCTAATGACCTTAGAAATCATAAATGTGTAGTGATATCAAAGCTGTTGAAGCAAGACGGAAGTCGTTTTGTTTGCAGAAAGTGCCGATTTACTTCAGACAGTTTGGGTAGTGCAAAAGTCCATTTGTTGGTGCATAAATCTTTTAAGGAAGCCGCAATACATACATGTTTGAAATGCGACTATCGAACTAAATATAAATCTAATCTACGAGGTCACATTAAGGGCCATAACGTATCAGAGCTTTGCAAAATTTTTAAGTATAGTTGTGAcgtttgcaaatttaaaactaaGACTAACCGTATGTTAAATCGTCATAAAAATTATTGTCAGAAATTGCGAAAAGGTGAAGAGCAACCATTTGATATAAGCAgtaataaaactaaatataaatGCGATTCCTGCGACTTTCAAACAGAATTTAAGGACAACTTGCAAGATCATAAAATTGTACACACCAATATCAACGAAGTCCGAGTCTATAGAAACAAAACGTATAACgttaaaattatgaagaaaagtAGCGCAAATGTTTATAGTCGAGCAGAAAGCACCGATTATGATGCCAAACAAGAGATAACGAAACCTGTCCATGACAACAATCATGGGAATAAAATGTATCGTTGTGACCATTGTTGTTATAGCTCTCGCGTGAAATGCAATTTAGAAAGCCATATAGTGGCACGCCATAAAAATCCGAAGAGTAAATCGCAGGACTTGGGGAAATCTACTGAAACGGGAATTAAATTTAGCTGTACACATTGTAGGTATACAACCAAGTTTAGATTTAGTCTAAATATGCATATTAATGAAACGCACACCAAGAAGATGCGCGCTATATTTAAATGTAGCTCTTGCTCTTTTACTTCGAACTACAAAGCAAATTTAAAGAGACACGTTAAAAACGCACATATTGAAAATGGTTGGTAA
- Protein Sequence
- MIEVYACLCYIQQLLKQAGFILYFTSLNNALLSSDSNDDGDDNRSHRTAKYVEINSDNTNATLYGEKSHSSIIITSVESVVYGSENNSLIIDDLESTALVDSLENTDSIGCLENYSFIDNSEHVTYQSEENATAEGLKSLKLNSVLYAKELLFKQTFKCHICPFSSKTRFSLSRHMGSHSTIDINAKMNDDDDNNTASQADTLSATTDLKIPKSYLFKCNFCSFSSKIRFALRRHHILTHANLTKKTLHSADAESSIKIAKCKRCLFVAKNNTGLANHVRLLHSAKNRTGLAHHLRITHKDKIGVKRQLCDKMMKQKNLPEHKYVCSEIIKNKDIPENQIEVMASEMTKLTNQIPTNSSNVCVSNCKYCSFVAKSKAGIVNHVRMIHKNVFPIYSSTNDNKESSLPDNFAPNTKIFKCKYCSFSSKIRFALRRHQTLIHTRKNTEEIFNSKSTRDQGASIYKNEVNKLRKSQSDTAFLCKFCSFSSDYKSRITQHTLLHTELKRKIHKCTDCDYSSTKYALSRHITSVHRLTMLHCEFCSYTSNQKVHIQRHTLLHTKFEQKIYKCKECNYKSTKCALSRHASERHGKYLGFNRKTGDRMQKFEPKQFNTNLSIFQCSYCSFSTKHAEVIPKHTLLHTKFNQKIEKCKHCNYRATKYALSRHTNAIHMKSIQSAKTNSIKTTKDAKSKDTEDAVDLQTNKPLENTTDDKDVKLSEDQLNRSRFQCTLCSHKSQNLSNFRVHLNMHKKHLDLAYQCKKYYFKTAKGLVKKHVSHFHRDINYKFKNEYTVGKNVKDLRQLNKNKRLVEPSTSEYSLSECLSGNKGASSSAGHILDFKSNRTVTGVSAENSQELSTKRHSNSDLSTVLYVCEICGYEAIQKDTLIAHKLTHVGTIVTIDVNEKRSDEKYVTGNKGGVPIKPKKTIFENNVVSKGRQARERIVLQHDKRQCCTCKRAFDNSNDLRNHKCVVISKLLKQDGSRFVCRKCRFTSDSLGSAKVHLLVHKSFKEAAIHTCLKCDYRTKYKSNLRGHIKGHNVSELCKIFKYSCDVCKFKTKTNRMLNRHKNYCQKLRKGEEQPFDISSNKTKYKCDSCDFQTEFKDNLQDHKIVHTNINEVRVYRNKTYNVKIMKKSSANVYSRAESTDYDAKQEITKPVHDNNHGNKMYRCDHCCYSSRVKCNLESHIVARHKNPKSKSQDLGKSTETGIKFSCTHCRYTTKFRFSLNMHINETHTKKMRAIFKCSSCSFTSNYKANLKRHVKNAHIENGW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -