Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: -
Assembly: GCA_963920685.1
Location: OY987336.1:47376144-47382600[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00012 0.039 17.4 2.0 1 23 141 163 141 163 0.98

2 14 0.003 0.98 13.0 1.4 2 23 173 195 172 195 0.94

3 14 9.8 3.2e+03 1.9 1.6 1 15 204 218 204 220 0.86

4 14 0.12 39 8.0 4.5 1 23 231 253 231 253 0.97

5 14 7.4e-05 0.024 18.0 2.0 1 23 262 285 262 285 0.97

6 14 6.5 2.1e+03 2.5 0.7 1 19 294 312 294 314 0.76

7 14 9.4 3.1e+03 2.0 3.7 1 19 325 343 325 348 0.90

8 14 0.0089 2.9 11.5 1.2 2 23 358 380 357 380 0.95

9 14 0.0042 1.4 12.5 2.0 1 19 389 407 389 409 0.96

10 14 7.9 2.6e+03 2.2 0.8 3 23 423 444 421 444 0.93

11 14 0.0028 0.9 13.1 0.5 1 20 451 470 451 472 0.95

12 14 3.2 1.1e+03 3.4 4.9 1 23 482 505 482 505 0.90

13 14 0.018 5.7 10.6 2.3 1 19 514 532 514 534 0.96

14 14 0.0095 3.1 11.4 3.1 1 23 545 568 545 568 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00012	0.039	17.4	2.0	1	23	141	163	141	163	0.98
2	14	0.003	0.98	13.0	1.4	2	23	173	195	172	195	0.94
3	14	9.8	3.2e+03	1.9	1.6	1	15	204	218	204	220	0.86
4	14	0.12	39	8.0	4.5	1	23	231	253	231	253	0.97
5	14	7.4e-05	0.024	18.0	2.0	1	23	262	285	262	285	0.97
6	14	6.5	2.1e+03	2.5	0.7	1	19	294	312	294	314	0.76
7	14	9.4	3.1e+03	2.0	3.7	1	19	325	343	325	348	0.90
8	14	0.0089	2.9	11.5	1.2	2	23	358	380	357	380	0.95
9	14	0.0042	1.4	12.5	2.0	1	19	389	407	389	409	0.96
10	14	7.9	2.6e+03	2.2	0.8	3	23	423	444	421	444	0.93
11	14	0.0028	0.9	13.1	0.5	1	20	451	470	451	472	0.95
12	14	3.2	1.1e+03	3.4	4.9	1	23	482	505	482	505	0.90
13	14	0.018	5.7	10.6	2.3	1	19	514	532	514	534	0.96
14	14	0.0095	3.1	11.4	3.1	1	23	545	568	545	568	0.97

Sequence Information

Coding Sequence: ATGGAAAAGAACTATCTAGGACAAGAAGAAGTATTACTGTCTCTACCTGGTCTAATAAAAAATGACCCAATTAAATCAGGGACTGTACCTGATATCAAAAAGGAACTATCTGAATCTCCTGATTTTGAAAAAGGGCACTTTAATGATGGACATATTTTTCCAATTCCGGAAATAAAGGAAGAACCTGTAAGTCCAGACTATTTAACCAATGAGGATATCAAAAGACTTATAAAAAGTGAAAGCGATGAGACAATAGTTAGAGATAAAGCCGTGTGTGATAATGACCTTAAGCAGTGGACAATTAAATCCGACGAGGTGCAAATAAAGGAGGAATGTGGGGAGGAGGTCGATATTAAAAGAAGCCTATCATCTGTTTCCCTTGCTGATCAAGAAAAGCAACAACTTAAAAAAACGGGCAGGTTTAGTTGCGATCAGTGCGACTTTAGGGCAACCAGGAAAGACTCTTTAAAGAGACACCAGCTTCGTCATGAAGATCCCGAGAAAATTGCCAGATTAAAATGCAAGCAGTGTGACTATCAAACAATCTACAAAAGTAATTTAAATAGCCATTCGCTGAGACTACATAGAAATTCAGAGGAAGTAAAGATATTTAAATGCGGCACGTGCAACTATCAAACGAAACAAAAGCTGCATTTTGACGTTTGCAATTGTCCAGACAAAGTCCAGATGTTTCGTTGCGATTATTGCGACTTTAAAACGACCTGGAGGGAGTCGTTAAAGAGACACCGGCTTCATCATAAAGAATCTGAGACCACTGCCAGATTTACATGCAATTATTGCGACTACCAAACAATCAATAAAGATCATTTAGCAAAGCATTTGCTGCGAATTCACGGGAATTCCGAGGAAGTGGAGGTGTTCAGATGCGACAAGTGCAATTACCAAACATTAAAGAAGAGTAATATCGAGCTACATTTTTCAGGTCGCCGATGCCCTGGGAAAGTTCAGACGTTTAATTGCGACCAGTGCGACTTTAAAACAACCTGGAAGGATTCTTTCAAGAGACACGACCAGCTCCATCATCAGGAGCCTGACAAAAGTGCCAGATTACAATGTGAGAAGTGTGACTTCCAAACAATGTATAAAAGTAGTTTGAAGAATCATGTGCTGCGCCTACACAGGAATCTGGAGGAAGTAACATTGTTTAAATGCGAGAAATGTAATTATCAAACAACGCGTGAGAGTGATTTTAGGCGACACTCTAATGATCAGGGCAGATGCCCTGAGAAAGTTCAGACCTTTGGTTGCAACCTCTGCGAATTTCAAACCATGTATAAACGCGCCCTAAAGATGCATTTCATCCGACTACATGAGAATTCTGAGGGCGTGTTTAAGTGCGACAAGTGTAATTACCGGACTGTGAAGAAGAATAATTTGATATTACATATTGACAGTCGCAAATGTCCTGGAAAAATACCGACGTTCAGTTGCAAGCATTGCGACTTTCAAACGCTGCATAAAGGTGCTTTAAGGAAGCATTTTGTTCGACTCCACGGAAAATCTGAAGGCGTAGAAGTGTTTAAATGCGACAAGTGCAATTATCGAACAATAAAGAAAAGCAATTTCCAGCTTCATTTTGACGGTCGCAAATGTCCTGGGAAAATTCAAACGTTTAGTTGCGACCAGTGCGACTTTCGAACAACCTGGAAAGATTATTTAAGGAAACACCAACGCCGTCGTCATAAAGGACGATAA
Protein Sequence: MEKNYLGQEEVLLSLPGLIKNDPIKSGTVPDIKKELSESPDFEKGHFNDGHIFPIPEIKEEPVSPDYLTNEDIKRLIKSESDETIVRDKAVCDNDLKQWTIKSDEVQIKEECGEEVDIKRSLSSVSLADQEKQQLKKTGRFSCDQCDFRATRKDSLKRHQLRHEDPEKIARLKCKQCDYQTIYKSNLNSHSLRLHRNSEEVKIFKCGTCNYQTKQKLHFDVCNCPDKVQMFRCDYCDFKTTWRESLKRHRLHHKESETTARFTCNYCDYQTINKDHLAKHLLRIHGNSEEVEVFRCDKCNYQTLKKSNIELHFSGRRCPGKVQTFNCDQCDFKTTWKDSFKRHDQLHHQEPDKSARLQCEKCDFQTMYKSSLKNHVLRLHRNLEEVTLFKCEKCNYQTTRESDFRRHSNDQGRCPEKVQTFGCNLCEFQTMYKRALKMHFIRLHENSEGVFKCDKCNYRTVKKNNLILHIDSRKCPGKIPTFSCKHCDFQTLHKGALRKHFVRLHGKSEGVEVFKCDKCNYRTIKKSNFQLHFDGRKCPGKIQTFSCDQCDFRTTWKDYLRKHQRRRHKGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -