Pter107589.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987332.1:109708816-109712802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.027 8.8 10.0 3.4 1 23 99 121 99 121 0.97 2 22 0.52 1.7e+02 5.9 3.4 1 23 154 177 154 177 0.96 3 22 0.24 78 7.0 0.1 2 23 195 217 194 217 0.95 4 22 0.11 36 8.0 1.5 1 21 251 271 251 274 0.96 5 22 5.9 1.9e+03 2.6 0.1 2 11 281 290 280 294 0.84 6 22 1.8 5.8e+02 4.3 0.7 2 23 369 391 368 391 0.96 7 22 0.23 75 7.1 2.4 1 23 410 433 410 433 0.94 8 22 0.03 9.9 9.8 1.7 1 23 439 461 439 461 0.98 9 22 0.11 37 8.0 1.0 1 23 469 491 469 491 0.93 10 22 0.086 28 8.4 1.8 2 23 520 541 519 541 0.95 11 22 0.011 3.6 11.2 1.2 2 23 550 571 549 571 0.95 12 22 0.0042 1.4 12.5 1.2 1 23 664 686 664 686 0.96 13 22 0.0065 2.1 11.9 2.0 1 23 792 814 792 814 0.99 14 22 0.042 14 9.4 1.5 1 23 850 872 850 872 0.98 15 22 1.2 3.8e+02 4.8 1.1 1 23 880 902 880 902 0.89 16 22 0.058 19 8.9 7.4 2 23 931 952 930 952 0.97 17 22 6.2 2e+03 2.6 0.7 1 11 960 970 960 973 0.84 18 22 1.4 4.7e+02 4.5 0.8 2 23 993 1014 992 1014 0.95 19 22 0.0057 1.8 12.1 2.1 1 23 1022 1044 1022 1044 0.97 20 22 2 6.4e+02 4.1 4.2 1 23 1115 1137 1115 1137 0.97 21 22 0.0046 1.5 12.4 1.4 1 23 1145 1167 1145 1167 0.97 22 22 0.0017 0.55 13.8 0.3 1 23 1297 1319 1297 1319 0.98
Sequence Information
- Coding Sequence
- ATGGATGATGTGGCGTTAAGCAGCGACAGCGACGACGATAGTAAAAGGAACCAAACTGTCAAAGAGGCGGAAATAAATAACGACAACAGTAATGACACTTTACTTGAAAAAAAGTTGCATTCACATAATCTGTCTTCCATAGTAATAACGAATGTACAGTCAGTTTATAATTCTGAAAATACTTCTTCAATCGTTGACGACCTAAATGACATTGTTTCAAATGACGATTTAGAAAATAGTGCTTCAAATGGTAAAGTAGTTTTAAATGCGCAAGAGTTACGGCTCAAACAAACATTTAAATGCAATCTTTGTCCTTTTTCTTCTAAAACGCGGTTTTCTCTATCGAGGCATAGCAGTAAGCATTTAAATATCGATACTAATTCTAAAATTAGTGATATCGCGGCACATCCCAATACTGCTTCGGCAACTACAGACCTCCAAAACCCAATAAGTCAAGTGTTTAAGTGCAAATTTTGTTCCTTTTCCTCAAAAATTCGATTCGCCCTACGCAGACACCATATTATAGCTCACGCGAATTGTAGGAAAAAAACAGCCGATGCAGAGTCGTCAAAAAAAGTTGTCAAATGCAAACGTTGCCCGTTTGTTGCTAAAAACAAAATAGGCTTGACCATTCACGTGAAGTTGATTCATAAAGATGACACCATAACGATAAATACGTCAAAAGAAAAGAAGTCCACTCTTTCGGATAAATCTTCAACCAATCAAATGACTACGTCAAAGTCTACTGGttttaaatgcaaatattgctCGTTTGTAGCTAAAAGTGCAGCGGGTTTGGCGAATCACCTGCGGTGttctcatcaagataaaatcaAAGTGAAATGCCAAATATGCGATAAAATGGTGAGAAAACTGAAGTTGCCAGAGCATAAGCTAGCTTGTTCCGATATAATCGAGAAGCATGTTAAGACAGGACGTCCTACATCAGCGGCAATGGCAAATGGAATGACAAATACAGCATTCCCGACACAAATGGATAATACAAAAGCTTTAAATTGCGCTGCACTTAACCGTTGTTCTACTGTTTCCCGTGAATATGCAACCAATCAAAGCAGTTCTAGTTCGTCACATGCTGGCGTTTCTAAATGCAAACATTGCTCGTTTGTAGCCAAAAGCGTATTGGGCTTAGTCAGTCACGTTAGGATgattcataaaaatatttattctttaaaTAGAAGTAATAATGTTGCACCCAATACTATGATATTTAGATGCGAGTATTGTTCTTTCTCGTCGAAAATTCGATTCGCGCTGCGTAGACATCACATTTTAGCTCATAGGGGAAACAATACATTTCCATGCGATTTTTGTTCGTTTAGTAGCAATCATAAGGCAAACACAATAAGACACATGTTGGTACATACGGAATCGAATGAGAAAATTTTCAAATGTAAAGAATGTGATTATTCGTCAACTAAAATGGCTTTAGTTCATCACGCATTATCGGTGCACGGAACGcactcaatttttgataaaaACGGCGAAACATGCAAAGGAATACAAAAGAGGAAACGCAGGACTCCTTCAGTTGCGCTTCAGTGCAAGTACTGTTCGTTTACCACCAGACACATAGGCGCACTTAAAAGCCACACGCTCTGGCATACGAGATATAAACGGAAAATTTTGAAATGTAAAAAATGCGACTACAAGTCGACCCAAACTGCGCTAAATAGACATATGGAATCGGAGCATAGTTGCACAGAAGCCAGTGAAAACAAATTGAAAAAGCTGCGAAGAACAGGCACGGGTGAACAGAGCAAAGATACTGGTTCTGCAGGTGCTGTAGATTTACACAGCACCAAAGGGCTTCAAAGTACGACAGGTAATAACATAAAGCTTAGTGAAGATCAGTTGAATCGCTCTAATGATCGTTCGAAATTACAATGTTCTGTATGCTCACACGTATCTCAGCACCTGGACAATTTTAAAGCGCATTGTAGAATGCACGAGAACCACCCACAATCGACTTATCAATGCCAAGAATGTAATTATAAGTCGACTAAAGCTGCCTTAACAAGACATATGAAGTTTGCGCATAATAGTGCAAAATATTCAGTCCCAAGCGGCAAGAACCACAAAGAATTTCAAAAACTGGAGTCGGTTAAAAGTGCTAAAGATGCTGAGTCTGAAAAAGCTAAAGATATTTATGTTAAAAGCACTGAAGATAGTCAAGATAATTTACAGAAAACTAAACTACTTCAAAACCGGAGAGATGGTGACAATCCAAAATTCAGTCCATTAGTAGGTAAGAACAAATCGGGTTCGGCAAATCACGTCAGGTTGCTCCGTAATAATATTTGTCCTACAAATAGTCGTGTTAAAGGTAATGACGAGTCAAccgttaaaaatagttttaaatgcaAGTTTTGCCCCTTTTCTTCGAAAATTCGATTCGCATTGCGTAGACATATTTTAACTCATACGCGTACAGACACGGAAGCAGAAGTATGCAAGTCTAAATCTAACAGCGTGCAAGATGCAACAAAAATACAAACAATATCGAGGAAAAGTCTGCCTGCTGCTAAATTTCCATGCAATTTATGTTCGTTTAGTAGCAATCATAAGGGGAGCACAATAAGACACATGTTGGTACATACGGAATCGAATGAGAAAATTTTCAAATGTAAAGAATGTGATTTTGCGTCGACTAAAATGACTTTATTATATCACACATCATCGGTGCACGGAACGCACTCAATTTTCGATAAAAACGGCGAAACATGCAAAAGAATACAAAAGACGAAAGGCGGGGCTTCTTCAGCTGTGCTTAAGTGCAAATACTGTTCGTATACCTGCAGACATTCGTATGTACTTAAAAAACACACGTTGTCGCATACGAAATTCAATCGGAAAATTTTTAAATGCGAAGAATGTGATTACCGGTCGACTAAAAGGATTTTACCTATTCACGCATTTTCGGTGCATGGAACTAACCTCACGTTCGATAAAATCAATCAGTGCAAGTACTGTTCGTTCACCAGCGGATCCGAAAACGGAATGAAAGTCCACATGTTCTTGCATACGAAATTTAATCGGaacattttcaaatgtaaagAATGCGACTACAGGTCGACCCAATCCGCGCTATATAGACATCGGAAGTCGGAGCATGGCTGTACCAAAGCCAGTCGAACCAAATTCAAAAAGGTGCGAAAATCAGGCGCAGGTGAAACTACCAAAGACACTGGCTCTGCAGGTGCTGCTAACGTTGGTGTTGAATGTATTAAAGATACTGCAGATTTACACAGCCCTAAAGGTCTTCCAAGTAATAACATAAAACTTAATGAAGATCAGTTGAATCGCTCTAATGGTCGTTCGAAATTTCAATGTTCTGTATGCTCACATGTATCTCAGAACCTGGTCAATTTTAAAGCGCATTGTAGAATGCACGCGAAACGCCCACAATCGACTCATCAATGCCAGGAATGTAATTATAAGTCGACTAAAGGTGCCTTAACAAGACATATGAATATTGCGCATAATGGTGCAAAATATTTAGTCTCGAGtcgaaaaaaatacaaagaatTCCGAAAACGGGATTCGGCTAAAAGTACTAAAGATGCTGAGTCTGAAGGTGCTGAAGTTGTTGGAAATGCTGAAGTTGTTGGAAATGCTGACGATGCTGCTGACTTATGCGGAACGAAACATATTCCAAATAAGACAGGTGATAACGATATTGCGTTCAGCGAAGCTCAGTTGAATCGCTCCATATTTCTATCTATTTTCAGCAACAATGTTCGGATTCTAAAACaacttaataaaaataatggtTTGACTCAATGGTCAGCTAATGCAAACACAAGCGATAGTTCATCTAGTGAAGTTCAGATGTCGCGTATTCAACAACGTTTAAGCTCTGATAAGCTTTATGTGTGTGAGATATGCGACCATGAGACCAATCAAAAAGAGGCGTTAATTGCTCACAAGTTGAGGCATGTGACTGACAATATGGACAGTTTAACCTGA
- Protein Sequence
- MDDVALSSDSDDDSKRNQTVKEAEINNDNSNDTLLEKKLHSHNLSSIVITNVQSVYNSENTSSIVDDLNDIVSNDDLENSASNGKVVLNAQELRLKQTFKCNLCPFSSKTRFSLSRHSSKHLNIDTNSKISDIAAHPNTASATTDLQNPISQVFKCKFCSFSSKIRFALRRHHIIAHANCRKKTADAESSKKVVKCKRCPFVAKNKIGLTIHVKLIHKDDTITINTSKEKKSTLSDKSSTNQMTTSKSTGFKCKYCSFVAKSAAGLANHLRCSHQDKIKVKCQICDKMVRKLKLPEHKLACSDIIEKHVKTGRPTSAAMANGMTNTAFPTQMDNTKALNCAALNRCSTVSREYATNQSSSSSSHAGVSKCKHCSFVAKSVLGLVSHVRMIHKNIYSLNRSNNVAPNTMIFRCEYCSFSSKIRFALRRHHILAHRGNNTFPCDFCSFSSNHKANTIRHMLVHTESNEKIFKCKECDYSSTKMALVHHALSVHGTHSIFDKNGETCKGIQKRKRRTPSVALQCKYCSFTTRHIGALKSHTLWHTRYKRKILKCKKCDYKSTQTALNRHMESEHSCTEASENKLKKLRRTGTGEQSKDTGSAGAVDLHSTKGLQSTTGNNIKLSEDQLNRSNDRSKLQCSVCSHVSQHLDNFKAHCRMHENHPQSTYQCQECNYKSTKAALTRHMKFAHNSAKYSVPSGKNHKEFQKLESVKSAKDAESEKAKDIYVKSTEDSQDNLQKTKLLQNRRDGDNPKFSPLVGKNKSGSANHVRLLRNNICPTNSRVKGNDESTVKNSFKCKFCPFSSKIRFALRRHILTHTRTDTEAEVCKSKSNSVQDATKIQTISRKSLPAAKFPCNLCSFSSNHKGSTIRHMLVHTESNEKIFKCKECDFASTKMTLLYHTSSVHGTHSIFDKNGETCKRIQKTKGGASSAVLKCKYCSYTCRHSYVLKKHTLSHTKFNRKIFKCEECDYRSTKRILPIHAFSVHGTNLTFDKINQCKYCSFTSGSENGMKVHMFLHTKFNRNIFKCKECDYRSTQSALYRHRKSEHGCTKASRTKFKKVRKSGAGETTKDTGSAGAANVGVECIKDTADLHSPKGLPSNNIKLNEDQLNRSNGRSKFQCSVCSHVSQNLVNFKAHCRMHAKRPQSTHQCQECNYKSTKGALTRHMNIAHNGAKYLVSSRKKYKEFRKRDSAKSTKDAESEGAEVVGNAEVVGNADDAADLCGTKHIPNKTGDNDIAFSEAQLNRSIFLSIFSNNVRILKQLNKNNGLTQWSANANTSDSSSSEVQMSRIQQRLSSDKLYVCEICDHETNQKEALIAHKLRHVTDNMDSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -