Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: -
Assembly: GCA_963920685.1
Location: OY987330.1:13042713-13046069[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2 6.5e+02 4.1 0.8 3 20 48 65 46 67 0.88

2 18 8.1 2.7e+03 2.2 0.2 3 21 78 96 76 97 0.90

3 18 9.5 3.1e+03 2.0 1.1 5 23 111 130 108 130 0.91

4 18 0.0063 2.1 12.0 0.9 2 23 156 178 155 178 0.95

5 18 6.8 2.2e+03 2.4 0.3 2 23 184 204 183 205 0.84

6 18 6.1 2e+03 2.6 0.3 5 23 217 235 216 235 0.66

7 18 1.5e-06 0.00048 23.4 1.7 1 23 241 263 241 263 0.98

8 18 0.41 1.3e+02 6.3 0.4 1 11 269 279 269 280 0.90

9 18 0.0017 0.56 13.7 0.2 2 21 288 307 288 308 0.93

10 18 3.1 1e+03 3.5 1.4 2 19 316 333 315 335 0.91

11 18 0.025 8.2 10.1 1.0 2 21 371 390 370 400 0.96

12 18 2 6.5e+02 4.1 0.2 3 23 433 454 432 454 0.93

13 18 2.3 7.6e+02 3.9 1.5 2 23 479 501 478 501 0.94

14 18 7.8 2.5e+03 2.2 1.1 2 23 507 527 506 527 0.90

15 18 0.035 11 9.6 0.5 2 23 540 558 539 558 0.94

16 18 4.8e-05 0.016 18.6 5.7 1 23 564 586 564 586 0.98

17 18 2.2e-06 0.00072 22.8 4.2 1 23 592 614 592 614 0.97

18 18 0.00031 0.1 16.1 1.7 1 23 620 642 620 642 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2	6.5e+02	4.1	0.8	3	20	48	65	46	67	0.88
2	18	8.1	2.7e+03	2.2	0.2	3	21	78	96	76	97	0.90
3	18	9.5	3.1e+03	2.0	1.1	5	23	111	130	108	130	0.91
4	18	0.0063	2.1	12.0	0.9	2	23	156	178	155	178	0.95
5	18	6.8	2.2e+03	2.4	0.3	2	23	184	204	183	205	0.84
6	18	6.1	2e+03	2.6	0.3	5	23	217	235	216	235	0.66
7	18	1.5e-06	0.00048	23.4	1.7	1	23	241	263	241	263	0.98
8	18	0.41	1.3e+02	6.3	0.4	1	11	269	279	269	280	0.90
9	18	0.0017	0.56	13.7	0.2	2	21	288	307	288	308	0.93
10	18	3.1	1e+03	3.5	1.4	2	19	316	333	315	335	0.91
11	18	0.025	8.2	10.1	1.0	2	21	371	390	370	400	0.96
12	18	2	6.5e+02	4.1	0.2	3	23	433	454	432	454	0.93
13	18	2.3	7.6e+02	3.9	1.5	2	23	479	501	478	501	0.94
14	18	7.8	2.5e+03	2.2	1.1	2	23	507	527	506	527	0.90
15	18	0.035	11	9.6	0.5	2	23	540	558	539	558	0.94
16	18	4.8e-05	0.016	18.6	5.7	1	23	564	586	564	586	0.98
17	18	2.2e-06	0.00072	22.8	4.2	1	23	592	614	592	614	0.97
18	18	0.00031	0.1	16.1	1.7	1	23	620	642	620	642	0.97

Sequence Information

Coding Sequence: ATGGACGAATCAAAATTTCACCATTTTCGCATATTCTTCTGCATGGCTTGCCATGATTATATTTCACTGGATACTTATCAGAATCATGCGTGTTTTCACAAAAAGCCTTTGCAAGAATTGGCTGATAAGAATAGGATTTTCTGTAAATTTTGTAAGGAGAGTTTTTACTGGAAAAATGACTTAGATAAGCATGAAAAATACTGTGGTGATGATGAGCTAAACCCCATAGCTTGTAAATGTTGCAAAGCCATATATTCCACTGCCAAAGAACTGGACGATCATTTGCAGTCTTTAAATAAGACGAGTCGTAAAAATCGACTTAactgtattttttgtcattttaAGTTCGATTCTGAAATTACATTAGGGGTACATATAAAAGAAAGGCATCGGGATATCattaaattaccaaaaataataaaaactaatgtTAAAACAGAGAAAAGTAAGCTCACGACCAAAATTCCATGTAGGTTTTGCACCCggacttttaaaaacaaaaactggGTGATATCTCACGAACGCAAGGAGCACGCAAAAGAGCTGATCAGATGTGACATCTGCTCTGAGAACATCAAAATGGAGAATTACAAGTCCCACCTTATATCTCACAGGCTTCACGAAAAATACAAAAGGACTCCCGATAAAATTTGCAACATTTGTGGGGTAAAAATCAAAAACCTGGACAGCCATATGGTCAGGCACAAGGACGAGAGGAAACATAAATGTTCCGTGTGTCCGAAAACTTTTAAGCTTCAGTGGGACTTAAAAAGGCACATGCTGGTTCATAGTAACGAAGCCAGACACATATGCCAGATTTGTGGTAAGGGCTTTAAGGTGGGATTGATAAAAACCAAGAATTCCTGTCCCATTTGCAACAAGCGCTTTTCTGACATCAGTGACCGTACTTTACACATTCAAAACATTGAGGCATTTGTTCTTATTTACTGTAAAAAGTGTGGCCACGTCGGAAACGCCAAAGACTCGTTCTTCCACCAcgagtattattttttttgtggtgTATGTCAAACGTTTCTTGACACAAATTTTTTGGATCATAAGTGTTTACATACGAGACTTGTACAAAGCTCGGCAGTGAAATCCAGGGTCCAGTGCAAGTTTTGCCAAGAAGTATTTTATTCAGAAGCTGATGTTGAACGGCATCAGTGTCAAAAGAAACGAAGAAGACAAAGGGATTTGTTTGTATGTAGATGTTGCTATCAGGACTGTTCTGATAAACGATTGCTTGACATTCACTTGAGAGTTAAGGTTCTTGAAAATACTGAATTCCCTTATTGTACAACTTGTGATTTACAGTGGAAAACTGAAGGTGAATATAAGGACCACATAAAAGATATACACTTAGCAACAGTGCCCATGCCAGATTTTACCACTGAACCAAGATCCAGGAACAGAAACAACCATACCAAAGTCCCATGTCGATTTTGCAAACTAAACTTCGCCAATCAGAATCTCGCGACGGGTCACGAGAGAAAATGCCACATGGAAGAAATGGTACAATGCGACCTGTGCTTTAAAGAGCTGAAGCTCAAAAAAATGAAAGCTCATCTGACCACTCACAGGACTGCAAAGTGCTATTATAACTCTCCGGCGAAGGTCTGCAACATCTGCGGTCTCTCCGTGAAAAATCTGAAGCGTCACATGGCAACTCACGGTGATCAGAGGAATCACAAATGTGTGACGTGCGGCAAACACTTTAAGCATCTGTGGGACTTGAAGAAGCACATGATAGTGCACAGCGACGACGCTAAGCACAACTGTTCGGTATGTGGCAAATGTTTCAAAGTTGCCTTTAATTTGAGGGTGCATATGAGAAGTCATGAGAATGTCAAGCCCTTTGCTTGTTTGGTTTGTGATAAGACTTTTACTACGAAGCAGTCTAGGGATAATCATTTAAAAACTCATGATAGATAA
Protein Sequence: MDESKFHHFRIFFCMACHDYISLDTYQNHACFHKKPLQELADKNRIFCKFCKESFYWKNDLDKHEKYCGDDELNPIACKCCKAIYSTAKELDDHLQSLNKTSRKNRLNCIFCHFKFDSEITLGVHIKERHRDIIKLPKIIKTNVKTEKSKLTTKIPCRFCTRTFKNKNWVISHERKEHAKELIRCDICSENIKMENYKSHLISHRLHEKYKRTPDKICNICGVKIKNLDSHMVRHKDERKHKCSVCPKTFKLQWDLKRHMLVHSNEARHICQICGKGFKVGLIKTKNSCPICNKRFSDISDRTLHIQNIEAFVLIYCKKCGHVGNAKDSFFHHEYYFFCGVCQTFLDTNFLDHKCLHTRLVQSSAVKSRVQCKFCQEVFYSEADVERHQCQKKRRRQRDLFVCRCCYQDCSDKRLLDIHLRVKVLENTEFPYCTTCDLQWKTEGEYKDHIKDIHLATVPMPDFTTEPRSRNRNNHTKVPCRFCKLNFANQNLATGHERKCHMEEMVQCDLCFKELKLKKMKAHLTTHRTAKCYYNSPAKVCNICGLSVKNLKRHMATHGDQRNHKCVTCGKHFKHLWDLKKHMIVHSDDAKHNCSVCGKCFKVAFNLRVHMRSHENVKPFACLVCDKTFTTKQSRDNHLKTHDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -