Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: -
Assembly: GCA_963920685.1
Location: OY987336.1:47405715-47409997[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.015 4.7 10.8 5.1 1 23 228 250 228 250 0.98

2 13 0.013 4.3 11.0 2.0 2 23 260 281 259 281 0.97

3 13 0.034 11 9.7 0.9 2 23 292 313 291 313 0.96

4 13 0.04 13 9.4 6.4 2 23 323 344 322 344 0.97

5 13 0.00082 0.27 14.8 0.2 2 23 354 375 353 375 0.97

6 13 4.5 1.5e+03 3.0 4.4 2 23 385 406 384 406 0.93

7 13 0.0001 0.033 17.6 3.3 1 23 415 437 415 437 0.99

8 13 0.0013 0.42 14.2 5.1 1 23 448 470 448 470 0.98

9 13 0.00036 0.12 15.9 1.1 1 23 482 504 482 504 0.97

10 13 0.19 62 7.3 4.7 2 23 514 535 513 535 0.97

11 13 0.0051 1.7 12.3 4.0 1 23 544 566 544 566 0.98

12 13 0.36 1.2e+02 6.4 3.0 1 23 575 597 575 597 0.97

13 13 0.00013 0.044 17.2 1.4 2 23 604 625 603 625 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.015	4.7	10.8	5.1	1	23	228	250	228	250	0.98
2	13	0.013	4.3	11.0	2.0	2	23	260	281	259	281	0.97
3	13	0.034	11	9.7	0.9	2	23	292	313	291	313	0.96
4	13	0.04	13	9.4	6.4	2	23	323	344	322	344	0.97
5	13	0.00082	0.27	14.8	0.2	2	23	354	375	353	375	0.97
6	13	4.5	1.5e+03	3.0	4.4	2	23	385	406	384	406	0.93
7	13	0.0001	0.033	17.6	3.3	1	23	415	437	415	437	0.99
8	13	0.0013	0.42	14.2	5.1	1	23	448	470	448	470	0.98
9	13	0.00036	0.12	15.9	1.1	1	23	482	504	482	504	0.97
10	13	0.19	62	7.3	4.7	2	23	514	535	513	535	0.97
11	13	0.0051	1.7	12.3	4.0	1	23	544	566	544	566	0.98
12	13	0.36	1.2e+02	6.4	3.0	1	23	575	597	575	597	0.97
13	13	0.00013	0.044	17.2	1.4	2	23	604	625	603	625	0.97

Sequence Information

Coding Sequence: ATGCCCATTAAGGATTTTGTCAGCGAAGATACAGAAATTAACACCGATTTTGCCCAAATGGATACGGAATATGTAAGCACTTTGATGGTTAAACTGGAACCAAAACTAGagatttttgaaattgaaaatcATAGTACTCCGCTCGATGATTCAAGAAACACCTTTGGTGACATACGGATTAAAGAAGAACCCTTGGAAGGAACCGAACTATTAGGACAATTGGATAAACTTGGGGATAAAGTGACTAAACTACATGAAAATCTGATTATTGATAATCTACCTACAACGTATGATACTGCGGTATTTAAATGCAGTTCTGAAACTTCTCCTTTTGAACAAATGGAAACTTTGGTTAAACTTGAAAGGTGTGAAGCAATAGGTGATCATGAAAAGAGACATGCAATCTTCTTGGAGgacttgaaaattaaaaatgaacctAACATTAAAGAGGAAGACTTAGATTTAAATACTACCAGTATGTTGTCTAACCCTGTTAACCGGGACCAACTGGAATATTACATGGCTCACGACTATCCACCGCTACACAACAACTTACAGGAAAGCATGTCAACAACAAAACCCGGTAAATTTCGCAAGTGCGATCAATGCGACTTTCAATCGCTGCATCAGAGCAGTTTACACATGCATCGCAAGCGACACATAAAAGAACAATTAAACATGTTCAAGTGCGATCAGTGCCATTTCCAGTCGATCGACAGATATCATTTGAAAACGCATCTTCTCATACACAAAAAACGGGAAGAGATGGAGATGCTTAAATGTGATCAATGCAATTACCAAACGTATTTGAAAAGCAGTTTGAAAACGCACGTCCAGCGACACAGAGATTACGCCGACGCCGATAAACTTCTGAAATGCGATCAGTGCAATTATCAGACCTTTGTGCTGGCCTATTTGAAAAGGCACCTCCTGCGACATCGGAATCCAGAGGAGGTTAATATGATGAGGTGCCATCACTGCGAGTTTCAGACCGTTTACAGAAGTAGTTTGAAAAGTCACCTTAAACGTCACAGAAATTCCGATAGAAGTAGACTGGTTAAGTGTGACATTTGCAGTTATAGAACTGTGGACCAATATGATCTAGCCAAGCACGTTCTTAGGCATAGAGCTCCCGAGGAACGCGAGGTGTTGCAATGCTATCATTGTGATTTTAAAACGTTCCTAAAAACTAGTATGAGAAACCACGTTTCGCGACATAAACTTGTTAAAGAAGCCGATTTGTATAAATGCAAGAAGTGTCAATATAAAACCAACGACAAAGGGAATTTAAGGACTCATCTCCTTCGACACAGGGATGAAAACACCAAAGAGGAGGATTTATTTAAATGCCATCATTGCAATTATCGGGCGGTGGTTAAAGATAATCTAAAGAAACACCTGGATCGACATAAGTTGCGACTGAACGTTGAGGAATCCAAGAAGTTCAAGTGCAATCAGTGTCAATACGAGACGGTACGCAGAAGTGATCTGAGCAAGCACCTGATCCTGCACATGGATCCCGAAGAGATAACCACGTTAAAATGTGATCAATGTAGGTTTCAAACCATTCATAAAAACAATTTCAAGTTGCACGTCCGACGACATCTACATGCCGAGAACTTGGATAAATTTAAGTGTGACCAGTGCGATTTTAAAACATGTTACAAAGCCAGTCTCACGAGTCATCTCATCAGACATAAAAAACCGGACGAAGTTAAAGTGTTCAAGTGCGACGAGTGTGAATTCCAGACGGTTTATAGACATGGTCTCGTTACACACCGGTTTCGGCATGCCGCCCCCGAGGATCTCCAGTGCACTGTGTGTAATTATCAAACTAGCAGAAGGGATCTTTTAAAGAGACATCTTCTTCGGCACAGAAACCTCAAGGAAGTTGGATTGTAA
Protein Sequence: MPIKDFVSEDTEINTDFAQMDTEYVSTLMVKLEPKLEIFEIENHSTPLDDSRNTFGDIRIKEEPLEGTELLGQLDKLGDKVTKLHENLIIDNLPTTYDTAVFKCSSETSPFEQMETLVKLERCEAIGDHEKRHAIFLEDLKIKNEPNIKEEDLDLNTTSMLSNPVNRDQLEYYMAHDYPPLHNNLQESMSTTKPGKFRKCDQCDFQSLHQSSLHMHRKRHIKEQLNMFKCDQCHFQSIDRYHLKTHLLIHKKREEMEMLKCDQCNYQTYLKSSLKTHVQRHRDYADADKLLKCDQCNYQTFVLAYLKRHLLRHRNPEEVNMMRCHHCEFQTVYRSSLKSHLKRHRNSDRSRLVKCDICSYRTVDQYDLAKHVLRHRAPEEREVLQCYHCDFKTFLKTSMRNHVSRHKLVKEADLYKCKKCQYKTNDKGNLRTHLLRHRDENTKEEDLFKCHHCNYRAVVKDNLKKHLDRHKLRLNVEESKKFKCNQCQYETVRRSDLSKHLILHMDPEEITTLKCDQCRFQTIHKNNFKLHVRRHLHAENLDKFKCDQCDFKTCYKASLTSHLIRHKKPDEVKVFKCDECEFQTVYRHGLVTHRFRHAAPEDLQCTVCNYQTSRRDLLKRHLLRHRNLKEVGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -