Pter141457.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus tereticollis
Gene Symbol
-
Assembly
GCA_963920685.1
Location
OY987336.1:47459565-47467044[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.36 1.2e+02 6.4 4.3 2 23 125 146 124 146 0.95
2 16 0.0033 1.1 12.9 3.3 1 23 186 208 186 208 0.98
3 16 0.043 14 9.3 0.6 2 23 242 263 241 263 0.95
4 16 3.5 1.1e+03 3.3 9.3 2 23 272 293 271 293 0.95
5 16 0.0043 1.4 12.5 1.2 1 23 300 322 300 322 0.98
6 16 0.00079 0.26 14.8 2.1 2 23 451 472 450 472 0.96
7 16 0.48 1.6e+02 6.0 2.1 2 23 483 504 482 504 0.95
8 16 0.0029 0.94 13.0 0.8 1 23 514 536 514 536 0.98
9 16 0.0011 0.36 14.3 3.4 2 23 545 566 544 566 0.96
10 16 0.21 70 7.2 3.4 2 23 574 595 573 595 0.95
11 16 0.15 50 7.6 5.5 1 23 600 622 600 622 0.98
12 16 0.007 2.3 11.8 1.2 2 23 630 651 629 651 0.97
13 16 0.00049 0.16 15.4 2.8 1 23 660 682 660 682 0.99
14 16 0.05 16 9.1 1.5 1 23 691 713 691 713 0.98
15 16 0.00013 0.043 17.3 3.8 2 23 723 744 722 744 0.96
16 16 0.015 4.7 10.8 1.4 1 23 753 775 753 775 0.97

Sequence Information

Coding Sequence
ATGAGTGACCAGTTGGATATTCCTTTggcttttaaagatggtgagaaTTTGAACGATTGCTATAGAATTGGCGATGAGGAATTTGATGATTATAAAGACCAAGTTGATTTTGTTGTTAAGAAAGAAACATTGGGACTAGAAATTTCTTCATCCACAGAGACTGAATATGCATCAGAATTTCAAGAATTGCACAAAGAACTCctggtaaaaattgaaaatgtcgaTGAAGTTACGGATTTTAGTGCAAACAATTGCATTGCTCAATGGGAAAtcaaaaacgaagaactagaaaTTAAAGAGGAAGATGTTGCACCAAATAAAATTAGTAAACCGGCAACCTCTACCAACCAAATCCCACAAACCTATGTGTTAAAATGCAATCAGTGCAATTACAAAACATTTAAAAGATACAACTTTGGAAGGCACAAGCTTAGACACAGAAACTCCAGGAAAGATAAGGTGTTAAAGTGTGATGAATGTACATTTCAAACATTTTACAAACTCAGGTTTCAAACGCATTATTTACGGCACAGGAATCCCAGTGAAGTTGACAGATTTAAGTGCGAACACTGCAGTTACAAGACCATTTACGAAAGAAATTTAAATTCTCACATTCTCAGGCATTCAAATCTGGAGAATGGCAACGTGCTGAAGGGTAGCGACGAAGATTTAACACTAAATAAGACTAGCACCGTGCAAGAAACACAAAAGGGCGATGTGTTAAAATGCGATTTATGTGACTACGAAACATTGGTCCTACGTAACTTGGAAAGACACCAACGGCGACACAAAAACTCTGTCACCGAGTTGCTAAAGTGTTTTCAGTGTGAATTTCGAACATATCACAAATCGAATTTATTAAAGCACCACTCGCACCATGCCGGAGAACGAGTCAGATTCGAATGCGATCAATGCGTTTACCAGACGATCAATGCAAAAAATTTGAAGGCTCACATTCACAAGCATTCCTATATGGGAGAAAGCAAAGTGCTTAAATGCGAGAGTGGCGATTATAAAACAACCGACAGGAATGATTTAAGCAAGCGTTGGCATGAACATGAGCGGGACGTTGTTTGTAATGACCCGGAAATTAAAGGAGACGAACTGCACGTTAAACAAGAGGATTTGGCACTACATAAAAGcagATTCAAAGAATTGCATTCTGATCGCAAAGGACTACTGGTAAAAATTGGAAACGTTGATGCAGTTACTGATTTTAGTGCAAAAAATGACATTGCTCAATGGGAAATCAAAAAAGAAGTACTAGAAATTAAAGAGGAAGATGCTGCACCAAATAAAATTAGCAAATCGACAAATTGCACAGAGCAAAAATCACAAAGCCCGGTCTTAAAATGTGACAAATGCGATTACGAAACCGACTACAAAAGCAACTTTAAGAGGCACCAAGTCCGACACAAAAACCCTGCTGGAAAAATTAAGGCGTTGGAGTGCGATCAGTGCACATTCCGAACATTTTACAAATTCAAATTGGAAACGCACCTGTTGCGGCACGACAGTCCCGCCGCAGAAGTTCGAAGCTTCAAATGCGATCAGTGCGACTTTCAGACGATTCGTGAAGCAACTTTACGGGATCACCTCCAGAGACACTCGAAGGGGGTCGGTAAAATGCTTAAATGCGAGCATTGTAATCACAGAACCATCGATAAAAGCGATTTGTACAAGCACATGCTTGCGCACACGGCGGACTCTGATATATTGAAGTGCGACAATTGCAGCTTTCAGACGTTTCGTAAGGCTAAGATGAAGAGGCACCTCCAGCGACATCCAGCTGATGGATTTAAATGCAAGCAATGTGAGTATCACACGGATTCCAAAAAAGCAATGACCAAACACACGAGTCGTCACAAAAATATGGTTGATGCATGGAAATGCGATCAGTGCGACTACCGAACTAACCTCAAAAGGACGTTAAATATCCATTTACGTCAGCATAGAAGTAGCGAAGAAGTTGTCACCTTTAAATGTGAATATTGTAGTTACAAATCTATCTACAAGGCTACTTTAAAAAGGCACGAACGTACTCACAAAAGCCCTGGAGAAATTGAAATGTTTAAGTGCGAGCGTTGCGACTTTCAGACGATGGACAGCGTGTATTTAAAGGAGCATCGTCTACGACACAGAGACCCGGCGGAAGTTACTATGCAAATGTGTAAGCATTGCGACTATCAAACTGTTAACAAGAGTAATTTACGGAGGCATCTTAAACTCCATAAAAACCTGGAGGAAGTGGATCTGTTCCAGTGCAGTCAGTGTGAGTTTCAAACGACTTATTGGTTTTCTTTAAAGGTGCACCTTGTCCGGCATATGGACGCAGGAATGTGA
Protein Sequence
MSDQLDIPLAFKDGENLNDCYRIGDEEFDDYKDQVDFVVKKETLGLEISSSTETEYASEFQELHKELLVKIENVDEVTDFSANNCIAQWEIKNEELEIKEEDVAPNKISKPATSTNQIPQTYVLKCNQCNYKTFKRYNFGRHKLRHRNSRKDKVLKCDECTFQTFYKLRFQTHYLRHRNPSEVDRFKCEHCSYKTIYERNLNSHILRHSNLENGNVLKGSDEDLTLNKTSTVQETQKGDVLKCDLCDYETLVLRNLERHQRRHKNSVTELLKCFQCEFRTYHKSNLLKHHSHHAGERVRFECDQCVYQTINAKNLKAHIHKHSYMGESKVLKCESGDYKTTDRNDLSKRWHEHERDVVCNDPEIKGDELHVKQEDLALHKSRFKELHSDRKGLLVKIGNVDAVTDFSAKNDIAQWEIKKEVLEIKEEDAAPNKISKSTNCTEQKSQSPVLKCDKCDYETDYKSNFKRHQVRHKNPAGKIKALECDQCTFRTFYKFKLETHLLRHDSPAAEVRSFKCDQCDFQTIREATLRDHLQRHSKGVGKMLKCEHCNHRTIDKSDLYKHMLAHTADSDILKCDNCSFQTFRKAKMKRHLQRHPADGFKCKQCEYHTDSKKAMTKHTSRHKNMVDAWKCDQCDYRTNLKRTLNIHLRQHRSSEEVVTFKCEYCSYKSIYKATLKRHERTHKSPGEIEMFKCERCDFQTMDSVYLKEHRLRHRDPAEVTMQMCKHCDYQTVNKSNLRRHLKLHKNLEEVDLFQCSQCEFQTTYWFSLKVHLVRHMDAGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-