Pter126003.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987334.1:67999432-68006605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.2 1.7e+03 2.8 0.2 3 12 217 226 217 228 0.90 2 14 1.7 5.4e+02 4.4 3.2 1 23 239 261 239 261 0.97 3 14 0.11 34 8.1 1.9 3 20 299 317 298 319 0.88 4 14 0.87 2.8e+02 5.2 1.6 2 23 443 464 442 464 0.96 5 14 5.6e-05 0.018 18.4 7.2 1 23 470 492 470 492 0.98 6 14 5.6e-05 0.018 18.4 1.8 1 23 498 520 498 520 0.98 7 14 1.1e-06 0.00036 23.8 2.3 3 23 589 609 588 609 0.99 8 14 0.034 11 9.7 0.6 1 23 615 637 615 637 0.98 9 14 4.7e-07 0.00015 24.9 0.6 1 23 643 665 643 665 0.98 10 14 7.9e-06 0.0026 21.1 3.3 2 23 671 692 671 692 0.98 11 14 5.3e-06 0.0017 21.6 3.8 1 23 698 720 698 720 0.98 12 14 6.5e-05 0.021 18.2 4.3 1 23 726 748 726 748 0.98 13 14 0.0003 0.097 16.1 2.8 1 23 754 776 754 776 0.97 14 14 0.049 16 9.2 6.0 1 23 787 810 787 810 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAGAAAACGATGAAAACTTAGTTAAAATTACGGATGTTTGCCGAGCGTGTCTAACAAGAACTGATAACATGAAGTATATTCTTGAAAATAGCGACGAAATGTTCTTATTACTCTCCAAGTTCGCTTTCGTCGCTAATTTGGAGCTAGAACTGGGTCCTAAATTCCCTTCATATATGTGCACCATCTGTGAGGAGAAAATACATACTTCTTATGAGTTCCAACAGCAGTGCCGAAAATCTAACGAGCTGGTCAAAGAGTACTTAGCAGTATTTGAAAAGCAAGACAGGATTTCGGTTGAACCTGAGTCGGAAATAATTCTGAACACCTCAGAAGAAGCAAATATAGTTCAGATATCGTCACTGGAAAGACCTTCTACCTTTCCAGCGACGATATTAGAAAATGCTACTGATACAACAGAGGCTCAATATGaagaaattatttcttcttctacATGTCAAGCAACTGGATGTAATAAAGTAGATTATGATGAAAATTTTCAGCAAGATTTAAGCAAATGCATTTCAGATTTAAAGGAAAAATACAGCATTGATTGTGTATGTGTATTCTGTGAATTTAAAGCTGATAATAGTATTACATTGTGTTCCCATGTATTTGAAGTACACAAggaATCTAAAAATTGGTGTTCCTTGTGTAACAAGGTTTTTCCTGATATAAAAGCTCACAAAGGAGAAGCCCACGAATCAGATTTTGTGTGTAAAGTTTGTCAGTTTCAGTGTTCCACTCTTAATTTAATTATTGATCATCTTCACAGTCATCAAGTTTCTGATAAAAACTCAGTTGAAATTAGTGAAATAAGTCTTAATGCAAATGATGGTGCTAGTGACAGTCAGGAATTGCTGGAGACACTTGCTGAAGATCATGCAGCTTGCTGCATTCTCTGCAATAAAATGTTCCCAACAAATAAAGCTCTAGAAAATCATAAATGCCTTATATCTGAAGAGCAACAAATCGGAACTGCTACAGATAAGGACAGAAGTATTGATACTGATGCTTCTGTTGAGCACTTTAAAGATTTCAATCCAAAAGAAGTACCACTCATGAATACAGCTCTACAAAGAATGAGGCTGCAACAGTACTCTGTCAAGGACGTTCAGAGGGCTATAAGGATAGTCAGGGAAAAGTGTTATAAGCATGTCACTTGTATTTTTTGCAAATTTACTGCAATCACCAACAGGAGTCTCTCGGTGCATGTAACAAGAGTACATGGGGAGTACAAAGGAAAATGGTGTTCTTCTTGCAATCAAGTtattgaacctgaactaaccactcaCAATAAAGAAGTGCATATCGACGATCTCAAGTGTCCGTTTTGCAAAAAAATAAAGTCAAATATGGGACATTTCATGGAACACTTGGCAAGTCATTCCGCTGAGAGGCTTCACAAATGTGACATATGTCACAAGTCTTTTATATCCAAAAGGCACTTAAGAATTCACAGAGCAACACATTTAAAAGAGAGGCCTTTTAAGTGCGAGCAGTGCGACAAAGCTTTTATGCAAGATAAACATTTAAGAGCGCATCTTAAGGCTCATCTGAGGAATGACGATTCTAGACTCGGAAATGAAGTTGAGGACGATTTGAGTGGCAAAAGTGATTCTGCAGAAGAGACTCAAGAAGTGCCGTTAAAACCTCACAATTTCTGCAAAGAATGTGATAAGAAAGTAAGAAGCTTACCCAGTCATAACAAGAAGCACCACAGTAAGACGAATTCTGTATACAATGAAAAACAGAACTTATGTCCGCATTGTGGTAAACGATTTGGAACAAGATCTAAGCTAACTGAGCATATCAGGACCCATACGGGGGAAACCCCCTATATATGCCGGTATTGTGACAAGAGAATTAGGACGAGGAACATTTTGGTCGTTCATGAGCGTACTCATACAGGAGAGAAACCGTATATGTGTACAGTTTGTGGAAAAAGTTTTGCCCAATCTAGCGTGTTGAACACTCATTTAAGGAGACATACAGGGAGACCGGAACAGTGTACGATGTGCGAGAAAAGATTTTGTCGGCCTGCCGAGTTAAGGTTACACATGAGAAAACATACAGGCGAAAAACCGTATATTTGTGACCATTGTGGGCAAGGCTTTAAACAGAAGAGCCATCTTGTGGAGCATACCAAAACTCATACCGACGACAGGCCACACAAATGCGAGCATTGTGAAAAAGCCTTTAAAAGTTATGGGACTCTTAAGTCTCATTTACAGATCCATACAGGTCAAAAACCGTTTAAGTGTTCCCAGTGTTCTTACGCGTGTAGACAGCCCTACAGTCTCACTCAGCACATGGCGCAACATGACATTGACAAGCCCCGCCCAGACTGCCCTCACACGTGTCAATTGTGTCAGAAAAATTATGCTACTATGGCACATTTGACAGCTCATCATAGCAGGTTTCATCCAGATCTAAACCCAAAGTTGATAGAAACCTTCCAACCACCAACGAACAGTGAAATAACCATCTCCGACCCACAAATTGATCCCAAATCTGATCAGAATGATCAAGGCGACTATCAAGTCACTGAGATGGAAACAGTTGAAACCATGGACACCATGATTATTGAAACACAGATCGATAATGGAGACATTAAATTTGAACCAATACATATTCACTTTACAACGTTGCAAGATTTATAA
- Protein Sequence
- MEEENDENLVKITDVCRACLTRTDNMKYILENSDEMFLLLSKFAFVANLELELGPKFPSYMCTICEEKIHTSYEFQQQCRKSNELVKEYLAVFEKQDRISVEPESEIILNTSEEANIVQISSLERPSTFPATILENATDTTEAQYEEIISSSTCQATGCNKVDYDENFQQDLSKCISDLKEKYSIDCVCVFCEFKADNSITLCSHVFEVHKESKNWCSLCNKVFPDIKAHKGEAHESDFVCKVCQFQCSTLNLIIDHLHSHQVSDKNSVEISEISLNANDGASDSQELLETLAEDHAACCILCNKMFPTNKALENHKCLISEEQQIGTATDKDRSIDTDASVEHFKDFNPKEVPLMNTALQRMRLQQYSVKDVQRAIRIVREKCYKHVTCIFCKFTAITNRSLSVHVTRVHGEYKGKWCSSCNQVIEPELTTHNKEVHIDDLKCPFCKKIKSNMGHFMEHLASHSAERLHKCDICHKSFISKRHLRIHRATHLKERPFKCEQCDKAFMQDKHLRAHLKAHLRNDDSRLGNEVEDDLSGKSDSAEETQEVPLKPHNFCKECDKKVRSLPSHNKKHHSKTNSVYNEKQNLCPHCGKRFGTRSKLTEHIRTHTGETPYICRYCDKRIRTRNILVVHERTHTGEKPYMCTVCGKSFAQSSVLNTHLRRHTGRPEQCTMCEKRFCRPAELRLHMRKHTGEKPYICDHCGQGFKQKSHLVEHTKTHTDDRPHKCEHCEKAFKSYGTLKSHLQIHTGQKPFKCSQCSYACRQPYSLTQHMAQHDIDKPRPDCPHTCQLCQKNYATMAHLTAHHSRFHPDLNPKLIETFQPPTNSEITISDPQIDPKSDQNDQGDYQVTEMETVETMDTMIIETQIDNGDIKFEPIHIHFTTLQDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -