Pter094659.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987332.1:1834288-1836280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5 1.1e+03 3.3 0.2 5 16 101 112 98 114 0.84 2 11 0.00074 0.24 14.9 0.2 2 20 234 252 233 255 0.93 3 11 0.00018 0.057 16.9 3.1 1 23 261 283 261 283 0.96 4 11 0.0004 0.13 15.7 0.9 5 23 296 314 294 314 0.96 5 11 5.4e-06 0.0018 21.6 0.1 1 23 321 344 321 344 0.95 6 11 0.00093 0.31 14.6 0.7 1 23 350 372 350 372 0.98 7 11 7.9e-05 0.026 18.0 1.8 2 23 385 406 384 406 0.96 8 11 5.5e-05 0.018 18.4 2.3 1 23 412 434 412 434 0.97 9 11 9e-05 0.029 17.8 0.2 1 23 440 462 440 462 0.97 10 11 1.6e-06 0.00054 23.3 0.6 1 23 468 491 468 491 0.96 11 11 1.2e-05 0.0039 20.5 1.4 1 23 497 519 497 519 0.98
Sequence Information
- Coding Sequence
- ATGATAGCCAGTCAAAGTTCGGACAAGGACGAGATTATAACGGAATCCTCCTTAGACTGTGTCGAGGAAAGTGATGTTTTTACCCTAAAAATGGGGGATGTAAGCGGTTTAGAAGATAAAAACGGCAATTTGGAATTAGTCAGAACGTCGACAATTCTAGCTGATAAAGTGTGTCGAACATGTCTGAAATTAGTAGAACCCGAATCGTGCATACTTCTTGAACCACTTGAGGATACAATCAGTAATATGGTGACTACGTGCCTTCCACAAATAAATTTGCTATTAACGAACCACCCGGTAATATGCCAAAAGTGCTTTACAAAGCTGGACGACTTCCACAGCTTCCTATTGAGTTGCTCTGTTACAGAAAATAAGTTGATCACTTATTGTACCGCAAATCACCTTACAACTCCCATAAACTTGTATGAAGTGTTCAAAAATGAAACAGTTAGTGTTAAATTAGAAAATGATGACGATATAAACAAGGCCAGTGCATTTGAAAACAAAGCAGATGTAGATGCAGATGTCAAAAGCGAATTTGAACAAAACGATGAGGATGACACTGCAAGCAATGCAGATACCGAACCAAGAAGGAAGTTGGTTAAGCGTAGGAAAAGGGTCTCTAGAAGAAAATTAACTAAACCAAAGTCCCTGGAAGATTCATCACTGTTTTCAGCAGATTTGGCTGAGGCCTCTGTCAAGTGTGAGGTATGCAACAAAAAATTTCCCACCAAATGGGCTTTAGATAGACACACCCCTGTTCATAGTGAAGAGCGCAAGTTTGTTTGTGAGACATGCAACATGTCTTTTAGATATAAGCATAGTTTTGAGAAGCACCTTCTTGCTCATATAAATGGGGCCCCGATAACTAAGCCTTTTGCTTGTGAGTGTGGTAAGTTTTTCAATCGGAAAGCCAAGTTAAAGAAACATGAACAGATACATATTAAGAAAGAGAAACCCTTTGCTTGTGACGATTGTGGGAAAAGATTTGTAGATCAAGAGtCTCTAAGCAGCCACGTATTGCGCGTTCACGCCACAGAAAAGGCGTTCAGTTGCGAGATATGCGGGAATAAATACAGCGGCAAATCAGGGTTGGATACGCATTTTAAGACTCACTTCCCCAGCGACAAGCCCAAACCCGAACCGGATCTAATGTGCGATTTTTGCGGCAAGCTGTTCTTCAGAAAGTACAGTCTGGAGAAACACCGCATGAGCCATACTGGGGACAAACCACACGAGTGTGAAGAGTGCGGCATGAGATTTAAAGAAAGatatcAATTGACAATTCACAATCGTCGCCACACCGGCGAGAAGCCGTTCGATTGCGATATATGCGGTTTTAAATTCCCTAGTAAAAACCGTTTGGGGGTTCACATGAGAATCCACACGGGCGTCAGGCCGTTTCCGTGCCAGATGTGTGACATGGCCTTTACCAGGAAGGATCATTTGATCAAGCACGTGCGTGCTATACATACGGGAGAGAGGCCGTTTGAGTGTGAAGTTTGCCTTAAAACTTTCAACCGAAGGGATTACTTGATAAAGCATAAGAAGGTTCACGTGAAACGTGGGTTGTAA
- Protein Sequence
- MIASQSSDKDEIITESSLDCVEESDVFTLKMGDVSGLEDKNGNLELVRTSTILADKVCRTCLKLVEPESCILLEPLEDTISNMVTTCLPQINLLLTNHPVICQKCFTKLDDFHSFLLSCSVTENKLITYCTANHLTTPINLYEVFKNETVSVKLENDDDINKASAFENKADVDADVKSEFEQNDEDDTASNADTEPRRKLVKRRKRVSRRKLTKPKSLEDSSLFSADLAEASVKCEVCNKKFPTKWALDRHTPVHSEERKFVCETCNMSFRYKHSFEKHLLAHINGAPITKPFACECGKFFNRKAKLKKHEQIHIKKEKPFACDDCGKRFVDQESLSSHVLRVHATEKAFSCEICGNKYSGKSGLDTHFKTHFPSDKPKPEPDLMCDFCGKLFFRKYSLEKHRMSHTGDKPHECEECGMRFKERYQLTIHNRRHTGEKPFDCDICGFKFPSKNRLGVHMRIHTGVRPFPCQMCDMAFTRKDHLIKHVRAIHTGERPFECEVCLKTFNRRDYLIKHKKVHVKRGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -