Pter124478.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987334.1:47800902-47803199[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.9e-05 0.013 18.9 2.9 1 23 22 46 22 46 0.95 2 14 0.0018 0.6 13.7 0.1 1 23 64 89 64 89 0.96 3 14 0.21 68 7.2 0.6 1 23 100 125 100 125 0.94 4 14 0.0036 1.2 12.7 3.8 1 23 131 156 131 156 0.93 5 14 0.00059 0.19 15.2 1.1 3 23 168 189 166 189 0.95 6 14 0.00071 0.23 15.0 0.4 1 23 208 233 208 233 0.96 7 14 4e-05 0.013 18.9 2.8 1 23 239 264 239 264 0.94 8 14 7.1e-06 0.0023 21.2 0.1 3 23 277 300 276 300 0.90 9 14 3.4e-05 0.011 19.1 1.3 1 22 305 326 305 328 0.89 10 14 0.00026 0.085 16.3 6.1 1 23 334 356 334 356 0.99 11 14 0.0074 2.4 11.7 0.9 5 22 362 379 359 379 0.94 12 14 0.00071 0.23 15.0 4.1 1 23 388 411 388 411 0.91 13 14 0.00011 0.036 17.5 3.4 2 23 421 445 420 445 0.96 14 14 0.0068 2.2 11.9 0.6 2 23 453 477 452 478 0.95
Sequence Information
- Coding Sequence
- ATGAGCATAGATACTTCCGACGAAACGTCCACAGCAGCCAAACAAAATCCATCCCGAAAACCACATAAGTGTGACAAAAATGGATGCAGCAAATCATTTTCCAGACGATACGAACTAAAAAGGCATTTAGAAGCGCACGAGAAAGGTACACTTAAGAAAACTGGGAAGGAACTGGCGTGTGAAAGAATATATGAATGTGATGAACCAGGTTGTAGTGCAGCATTTACCAGAAATTGGTCTCTGACAGTACACAAACAAAGAAGACATACTAACACCGAAAATAATGATAAAAAACGGTACAGATGTGACGAACCTGATTGTGAAGCGGCGTTTATGCATCATGATCGTCTAGAAGCACATAAACTTCTTTCCCATTGTGAAGAACGATCTTTTAAATGTGATCACGAAGAATGCGAGAAAACCTATCGAAAAGAGGCTCATTTAAAAAGGCATAAACTCGCGAGTCACTCGCAGAAAAAAGATGCCTCACAACAGGTGATTTGTAATGAGTGTGGGAATAGCTATTGCAATAAATATGTTCTCAAACAGCACATGACCAGCGCCCACAAAGAGCAAGAATCTGTTATACCAAACGTGAAGAAGTGTGACATTCAAAAAAAGCACAAATGTGATGAACCAGGGTGTGGCGCGGCATTTAACAGGCCTTATCGCCTCAAAAATCACAAGCTGACCGTGCATGGTGGAGAAAGACCTTTTCATTGTGGTATTGAAGGTTGTGACAAAAGCTATACAAACGAGTCGCATTTGGCTAGACACAAAAGGACAAGCCACTTCCCAGAAGACATAGATTCTTCAAAGGAAGTGATATGTGGAATGGAAGGTTGCGGAAGAATTTTTTCCAATAAGTATAACCTTAAAAAACATATAGCTACGATTCACGTGGAATTTCCATTCTCGTGTCAGGAGTGCGGCGAAAAGTTTAAACGTAAGAGTCAGCTTCACGTGCATAGCGTTATAGTACACGAAAAGGAAGCGGCTTACAAGTGCAGCAAATGCCCGAGAAGCTTTACACATTTCAATCTATACAACAAGCATTTGAAAAGTCATCAAGATTACCAGTGTGATTGTAAGAAGACGTATGATAAGTGGTCAAGCCTCTTAAAACATAGAAGAACTGAATGTACTGCTAAGCGTAAGGAACATAAATGTGTTATTTGCGGAAAAACCTTTACTGTAAAACAAGCACTTACCCACCATTCTCTGCACGTTCACGTACCCGACAGTCAGATTGATCTTTTGCAATGTCCTTATTTAAACTGCAAATActcatataaatataaaaacaaccTCAAGCATCATATACGCACATATCATGAGAAGCTCTTCAAGACAATCAAGTGTCCAGAGAAAAATTGCGAGGTGGTACTCAACTCAAATAGAAATCTGAAACAGCACTTGAGAATAATACACCATGGTCTACCAGTAAAAGTCAGGAAGCCTAGAAAACCAAGAAAGGACAAAGGCAAACCCAAAAAATCGATGGCTTCAGTTATCAGTGGGTTTGAAGTCAGCTCTGAAGAGAATTATAGGAATATTGCTGTCAAGTTGGATGATACTTTGAAAGAGAAAGATTTAGCTCATTCGCATAAGGCCCAATGTCAGAATACTAATGGCGGCAAATTAAGAAGTAATAAGGAAAGTTGTGAAGGTATTATCAAGACTAAGGTTAAGGACAAAGGGAGTGAATGTGCGATGCCGGATATTGCCACATCATTACCTGTGTCTGATGATACTGAGGAAATCTCCAGAAACTGCCACAATACTACATCTAGGTCAGAAATGAGTATGGATATAGATTATGGATGCTCAAGACCTGTAATTGTTTTGGAAGATAAGTCGAATGAACGTGGTGAAAGCGacagaaataaaataactaataataacTGTCAATCAACTGAAGATTGTGAAATTGATATTGAAGATCAAAATAAAGCTTTAGATGTTACAGTATCGTCCACTAAGACTAATCTTGCTGTAATTAGTATGGATATAGATTTGGAAACTACACAGAATCTAACTGTTTTAGAAATGTCGTCAAAGGAGCTTTCAAACAGTAAAAAAAACCACCATAGGAACATTGAGAAAGGTGATATTGTATTAGGAGATGCTGCACAAGGTCAAGAGGACTTTTTGAAGTTGAATATGGAGACTGCATTTTTAAACCTTGATCAAAAAAGTTGCGACAGCGGGACTGTTATATTTGATTTCCCCGAATTTGATGATGTTGATCTTGGTAATATTACGGATGGATTAAGTGAGTGCAACAAAGAACACTGA
- Protein Sequence
- MSIDTSDETSTAAKQNPSRKPHKCDKNGCSKSFSRRYELKRHLEAHEKGTLKKTGKELACERIYECDEPGCSAAFTRNWSLTVHKQRRHTNTENNDKKRYRCDEPDCEAAFMHHDRLEAHKLLSHCEERSFKCDHEECEKTYRKEAHLKRHKLASHSQKKDASQQVICNECGNSYCNKYVLKQHMTSAHKEQESVIPNVKKCDIQKKHKCDEPGCGAAFNRPYRLKNHKLTVHGGERPFHCGIEGCDKSYTNESHLARHKRTSHFPEDIDSSKEVICGMEGCGRIFSNKYNLKKHIATIHVEFPFSCQECGEKFKRKSQLHVHSVIVHEKEAAYKCSKCPRSFTHFNLYNKHLKSHQDYQCDCKKTYDKWSSLLKHRRTECTAKRKEHKCVICGKTFTVKQALTHHSLHVHVPDSQIDLLQCPYLNCKYSYKYKNNLKHHIRTYHEKLFKTIKCPEKNCEVVLNSNRNLKQHLRIIHHGLPVKVRKPRKPRKDKGKPKKSMASVISGFEVSSEENYRNIAVKLDDTLKEKDLAHSHKAQCQNTNGGKLRSNKESCEGIIKTKVKDKGSECAMPDIATSLPVSDDTEEISRNCHNTTSRSEMSMDIDYGCSRPVIVLEDKSNERGESDRNKITNNNCQSTEDCEIDIEDQNKALDVTVSSTKTNLAVISMDIDLETTQNLTVLEMSSKELSNSKKNHHRNIEKGDIVLGDAAQGQEDFLKLNMETAFLNLDQKSCDSGTVIFDFPEFDDVDLGNITDGLSECNKEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -