Pter066045.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987330.1:12811168-12838416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00066 0.22 15.1 1.9 1 23 16 39 16 39 0.96 2 18 0.002 0.65 13.6 0.8 1 23 45 68 45 68 0.90 3 18 0.00011 0.036 17.5 3.5 2 23 74 95 73 95 0.97 4 18 0.0062 2 12.0 3.3 1 23 104 126 104 126 0.97 5 18 1.4e-06 0.00045 23.5 1.7 2 23 134 155 134 155 0.97 6 18 0.00085 0.28 14.7 1.1 1 23 205 227 205 227 0.97 7 18 0.0043 1.4 12.5 4.4 1 23 232 255 232 255 0.97 8 18 7.8e-06 0.0026 21.1 1.2 1 23 262 284 262 284 0.97 9 18 0.011 3.4 11.3 1.6 1 23 328 349 328 349 0.97 10 18 5.5e-06 0.0018 21.6 2.7 1 23 355 377 355 377 0.98 11 18 1.4e-05 0.0047 20.3 0.5 1 23 383 405 383 405 0.95 12 18 0.0076 2.5 11.7 0.3 1 17 444 460 444 461 0.93 13 18 0.014 4.5 10.9 2.1 2 23 472 493 471 493 0.96 14 18 0.076 25 8.6 1.4 1 21 652 672 652 673 0.95 15 18 0.0087 2.8 11.5 0.5 3 23 681 702 680 702 0.93 16 18 0.016 5.1 10.7 1.5 3 23 708 728 707 728 0.97 17 18 0.0061 2 12.0 4.1 1 23 734 757 734 757 0.96 18 18 1.7e-06 0.00056 23.2 1.9 1 23 762 784 762 784 0.98
Sequence Information
- Coding Sequence
- ATGTTGGAACATCACCTGAAGTATGTTCACTTTAAGGAGTACGAGTACATATGCCAGTTCTGCGAAAAAAAGTTTATCCATGCAAAGGCGATGAAGAAACACATTAACAACGTTCATTTCAACCAGTTTCGTTATTTGTGTTCTATGTGTGACCGAGGCTTCAATTATCGGTACGAACTCCTAAAACACGAGGAATATAACCACAATGGAACCAGGCTAATATGCCACGTTTGCAAGAAggaatttaaaaatgaacagtATTTTAGGGAGCATCAGAGAACACACGAGCCGAACTATCAGAAAGAGCATTACACTTGTATAATTTGTTCCAAGGTTCTTACTCACAAAAAATCTTATAGAGTACACATGAAATCACATACAGGCGAATCTGTGCTAAATGTTTGTGATATATGCGGCAAAAAGGTAACGTCTAAAGCGAGCTTGAGGCATCACATGAGAACCCACACTGGAGAAAAGCCGTTTCAATGTGACATTTGCGTCATCTTATCAGTCGGAAAAACAATCGTTGCAAACGATCAAATCACCAAGAAGGTCGCGACTCATTTAAGGCATTTTGTATTTACCATTTTCCTTTTCAGCGAAATTGAAATTTTCCAATGCCAGCAGTGCGACAAAATATACCCGTCGATGCCCCAACTCAAAAAGCATTCTTACACTCACGGAGAGAAACGGTATCAGTGCTACCATTGCAGCAAAAAGTTCATTTACAAGAACGTACTGGCGCATCACATAAAACTTGTGCACAAAAAGACCCTCATCGAATTCATCTGTCCCCACTGCGGGAAGAAATTCAAAGAGAAACCGTGGTTCGAGAAACACATTAAAGCTCACGACCCGAATTTCAAACCGGAATTCGAATGTCCCATTTGTTGTAAAGCTTTGACTTGCTACAAGTACTTGGAGGTTCATTTGCAGAAGAGGCATACGAAAGATAGCAGATTTCCTTGTCATTATAGAAGATACTGCTGTGATATATGCGGAAAAGCCATGTTAAAGAAGAATTTGAAGGTCCATATGATGTCGCATACGGgTGAAAAACCGTATAGTTGCGAATACTGCGGAAAAGGATTTGTAACAAGAAAATGCCTGAAAATCCATACAAGGGTGCACACAAAGGAGAAACCATACCTGTGCGCTCTGTGTGGCAAAGGCTTTACACAAAAATATTCTGTTACGGTGCATATGCGATATCATACCGGGGAGCGACCTCATCAGTGTTTAAGATGTCCTAAAGGATCCACTAGCGAAGTAATAGAAGACGATATATTTGGAGACGAAGACTCGATTGGAGGTGAAGCTATCGAGCAATACCAATGCGGAATTTGCTCGAAGATCTTCTCCAGCAAACAGAACTTCATCCAGTTACATATCAACATCTACGCCAAGAAACTGACTTGTTGCAAATGCTTACAAGTTTTTGAAAACCCCGACGACCTCTACGTACACCACGAAACCCATAAGGACGAAGAAAGCTACGGTGTTCTGTACCAAGAAGGGGATGAAAGTGAAGATATTATTTTTATGGACGAGGGGGACGAATTACTGGAAATCCAACAACCAGGCGGCGAGGACCTTTTGTACATTCTCGATGATACCGATCAAAACTGCGTGAATGAAGTGGTGGTTCAAGAAGATCAACTGGTACAGGTGCACGGTCGAAAGCAAGGAAGAAAAAATAGCGAAGCAGCTCAGTTGGTTAGTTTGGAGCATGGCTATATGCTTCCAGATTCTCTGGAAGATTCCACTTCGTCTGACGGACAAGTTGTGTTTGCTAAAAGGCTGTCGTTACCAACGACTTCTTCGTCTTTGAAACGATCGATTTCGCCTCCGAAACCACGAACACCACAATTAAGAAGACGCCACGAAGTTCCAGATTTTTCGGCGACCAATTACATACTTATCGAGCCTAATGATGAACTTGATTCTACTCATTTCAAATGTCAACGTTGCGAGCAATTGTTTATCAACAAATTCGGATTCTTTCGCCATATAGAAAAGGGCAAGTGCTACGTCAATAACTGTGACGTATGCAGTAACACGTTTACATCGAACAGCGACTTTTACTCTCACTATATGGCTGAGCATACGGATCGAGCGATATGTAACTTTTGCTTCAGAACATTCATGTACGAGAAGAACGTCAAAGAACATATGTTGCGACATTTGGATCAATTTAGGCATCGATGTGAGGAGTGTAACAAAGGATTTTATACTGTGAGGGAATACCGGAACCATTATAAAAACAGACATATGGGGATTAGACACAAATGTGACGTTTGTGGCAGGAGTTTTGCAGATGAATACTATTTTAGAAAGCATATGGCCACGCACGCTAAAGCTTCTTCTGTAACGGTGTTGAAAATTCAGAATGAGTAA
- Protein Sequence
- MLEHHLKYVHFKEYEYICQFCEKKFIHAKAMKKHINNVHFNQFRYLCSMCDRGFNYRYELLKHEEYNHNGTRLICHVCKKEFKNEQYFREHQRTHEPNYQKEHYTCIICSKVLTHKKSYRVHMKSHTGESVLNVCDICGKKVTSKASLRHHMRTHTGEKPFQCDICVILSVGKTIVANDQITKKVATHLRHFVFTIFLFSEIEIFQCQQCDKIYPSMPQLKKHSYTHGEKRYQCYHCSKKFIYKNVLAHHIKLVHKKTLIEFICPHCGKKFKEKPWFEKHIKAHDPNFKPEFECPICCKALTCYKYLEVHLQKRHTKDSRFPCHYRRYCCDICGKAMLKKNLKVHMMSHTGEKPYSCEYCGKGFVTRKCLKIHTRVHTKEKPYLCALCGKGFTQKYSVTVHMRYHTGERPHQCLRCPKGSTSEVIEDDIFGDEDSIGGEAIEQYQCGICSKIFSSKQNFIQLHINIYAKKLTCCKCLQVFENPDDLYVHHETHKDEESYGVLYQEGDESEDIIFMDEGDELLEIQQPGGEDLLYILDDTDQNCVNEVVVQEDQLVQVHGRKQGRKNSEAAQLVSLEHGYMLPDSLEDSTSSDGQVVFAKRLSLPTTSSSLKRSISPPKPRTPQLRRRHEVPDFSATNYILIEPNDELDSTHFKCQRCEQLFINKFGFFRHIEKGKCYVNNCDVCSNTFTSNSDFYSHYMAEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTVREYRNHYKNRHMGIRHKCDVCGRSFADEYYFRKHMATHAKASSVTVLKIQNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -