Pter066010.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- Sall1_1
- Assembly
- GCA_963920685.1
- Location
- OY987330.1:12615665-12619329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.5e-05 0.0082 19.5 0.6 1 22 59 80 59 80 0.96 2 23 0.0087 2.8 11.5 1.6 1 23 127 149 127 149 0.95 3 23 0.0079 2.6 11.7 0.1 1 23 169 191 169 191 0.97 4 23 2.9 9.3e+02 3.6 0.7 3 23 197 218 195 218 0.95 5 23 0.072 24 8.6 0.1 1 23 224 248 224 248 0.95 6 23 0.057 18 9.0 4.6 1 23 254 276 254 276 0.90 7 23 0.0054 1.8 12.2 0.7 1 23 282 305 282 305 0.93 8 23 0.062 20 8.8 0.3 2 23 317 339 316 339 0.94 9 23 0.0017 0.55 13.8 0.5 3 23 352 372 350 372 0.96 10 23 0.083 27 8.4 4.2 1 23 378 400 378 400 0.91 11 23 3.9e-07 0.00013 25.2 0.5 1 23 406 428 406 428 0.99 12 23 0.19 61 7.3 0.2 1 16 434 449 434 451 0.87 13 23 0.00022 0.072 16.6 0.8 2 23 551 572 550 572 0.97 14 23 0.034 11 9.7 0.4 1 23 592 615 592 615 0.95 15 23 0.0083 2.7 11.6 2.7 1 23 619 641 619 642 0.93 16 23 0.068 22 8.7 0.1 2 23 648 670 647 670 0.95 17 23 0.011 3.7 11.2 2.5 1 23 676 698 676 698 0.95 18 23 0.00045 0.15 15.6 0.6 1 23 704 727 704 727 0.94 19 23 0.0013 0.42 14.2 0.9 2 23 739 761 738 761 0.93 20 23 8.2e-05 0.027 17.9 0.6 3 23 773 793 771 793 0.95 21 23 0.00013 0.043 17.3 3.1 1 23 799 821 799 821 0.97 22 23 5e-06 0.0016 21.7 0.7 1 23 827 849 827 849 0.98 23 23 0.051 17 9.1 0.4 1 20 855 874 855 875 0.95
Sequence Information
- Coding Sequence
- ATGAAACTTCGCTCTAACCCACGACGAGCTAGCAGTAAAAGGCTAGAGGAGTTTCTTGACATTGTTTTTAAAGAAGAAGGTAGCAGCGATGACGAGAACGAGAACACTGATATAGCAGCAGAAACAGTAACGCATAGCAGGAAACTCCCTCGTGGCAAAACGAAAACCAAGAACTATGAGTGCAGCAAATGCGGCAAAATTTTCTCCAGCAAAATTCAGCTCGATAAACATAAGAGAATGGACGATTGCGATTATTCAGATGATTCTATAAAAGAAGTCTCATAcaagaagaaaattaaaacagaGCACAAGAGCGTCAAACAGTCGAGAATTAAGGGAGAGGACAGAAGTATTATTACAGACGACGGTGAAAAGTTGTATCTCTGTAAGAAATGCCCGTTAAAATTCAGCATGCTCAAGCTTCTGAAGGAGCATCGGAAAGACCATGCGCCTAAGGAATTTATTGAGAACCATACATTTTCCTATGATGACGCGCAGGAAATCTACATTTGCAACACTTGCTCTGCTGAATTTAAAGATGAGGGGGAAGTGGAGAGGCATACAAAAGCTCATGGTGAGAATTTCGGGTGTTCCTTATGCGAAGGAAAGTTTCAGACTCTATTTCAACTCGGGAGTCATTTAAAGAATACTCACACGGATGATGATCAGTTCAGTTGTCCTCTGTGTCCTGATCTTAAATTTCCCAAGCCCTCGCTATTTATGAAACACATCGATGTGAAACACCAGAAACGTTACATGTATACCTGCAAGGAATGCGGAAAGGGATTCCACAGCAAGACTCTGTGCAGGGAGCACGGTAACATGCATCTCGGCGTGAAGCCTTTCTCCTGCATTGTCTGTGGTACCAGCTTCACCTACTCCAAGTCGGTGACCACTCATCAGCTGAAAGCTCACCGTGTTGAAATTCTGGGTAAGAACCACGCTACTGAATGTACTTTTTGCAGAAACCGATTTGTTTCTATTGCCTCCTTGGAGCGGCACGTTCAACAGGTCCACTCCACCCCCAAGCCTCCAAAAGAAAAAATCCACTTGTGCGACATCTGCGGAATGGGCTTCGCCAAGAAAAACAAAATGGTGGTGCACCAAAGAGTCCATACAGGCGTTAAACCCTATCCCTGTCGTCACTGCCCTAAAAGCTTCTCTAAATCAGGCGAGCGCAATTGTCACGAAAGAATTCACACGGGAGAGCGACCTTACAGCTGCGAGTATTGCGGGAAGGCCTTCAGGCAATCGGCACCATTCAAGGTACATATAAGGACTCACACTGGAGAACGGCCCTATGTTTGTGATATTTGTGTTAAAGGCTTTACCACCAATCAAGGATACCAGAACAAGATTAGACTAAAAATTCCGAAAAAACGGACCAAACGAAGACGGTCGACAACAAAGTACTCAGACTCTGACTGTGATACCGAAGACATTCCATTGAGACGAAGGAGCTTAAGAAAGAGCACTGTAACGGTCCCCGATATCGATGAAGATAAACTAAAAGAAGAAGAACTAGTTATTAATTATTCTTTGGACAGCGAGAGCGATTTCGAACCTCCCAAACCCAAGAGAACTCTAAAATTGAAAAACAAAGTCCCTAAAACTGGAAAGAAGCGAAAGTATGATTCCAGCAAGACGTGGGAATGTAAGAAATGTCCACAGGTCTTCATCACCTTCAATCTATTACGAGACCATCGCAAGACACACAGCAAAAAAGACGTTCCAGAGAACCACACTTACAAATTTGACATTATTCAAGATTTATACATTTGCAACACTTGCTCGGCTGAGTTTCAAGATGAAACGGAGGTGAAAAATCACATGAAAGATCGTCACGAGAACGAGTACTCCTGTACACAATGCGACAAAAATTTCAAGACATTATATGAAATGGGGTCGCACTCTGGAACACACCATCCTGAAGGACACGTCACGTGTCCACTTTGCAGCTATAAAAGTCCTAAAAAGGGGGCTTTGCTGATTCACATTAACTACGTCCACCTTAAGAAGTTCGCCTATTTCTGCCAGAAATGTGGAAAGGGCTTTAACGATCACTTGCTGTTTAAAGAACACGAAAACGAACACTTGGGCGTTAGACCATTTGCCTGTGTAGTATGTGGAAAGAGCTTTACTTATACCAGatatttatatacTCATCAAGTACGAGCTCACAGGGTACCTATAGACGGTCAGCTGCTTCCAAACCAATGCCCGTACTGCAGCAGAAAATACAGTAAAACCGAAACTCTGGAGAAACATCTGGAAGAAACCCACTTTAAACCCGGACCCCACGAGAAAAAGCACCTTTGTGACACGTGCGGAAAAGGGTTTGCCCAGAGAAGCAAGCTAGTCATCCATGAGAGAGTCCATACAGGTTACAAGCCGTACGCTTGTAGGTATTGTGAAAAATGCTTTACTAAAAAAGATTATCTGGTGATGCACGAGAGGGTTCACAGCGGGGAAAAACCGTACTCGTGCGAGTACTGTGGTAAATGTTTTAGTCAGGGAGCGCCGCTCAGGATCCATCTGAGGATTCATACAGGGGAGAAACCGTACGAGTGCCAATTTTGTTTGTTGAGGTTCAGTTCCAGAGGAGCTCTGAACCTGCATAAGAATTGTTCTGCTATAATACTGAATTAA
- Protein Sequence
- MKLRSNPRRASSKRLEEFLDIVFKEEGSSDDENENTDIAAETVTHSRKLPRGKTKTKNYECSKCGKIFSSKIQLDKHKRMDDCDYSDDSIKEVSYKKKIKTEHKSVKQSRIKGEDRSIITDDGEKLYLCKKCPLKFSMLKLLKEHRKDHAPKEFIENHTFSYDDAQEIYICNTCSAEFKDEGEVERHTKAHGENFGCSLCEGKFQTLFQLGSHLKNTHTDDDQFSCPLCPDLKFPKPSLFMKHIDVKHQKRYMYTCKECGKGFHSKTLCREHGNMHLGVKPFSCIVCGTSFTYSKSVTTHQLKAHRVEILGKNHATECTFCRNRFVSIASLERHVQQVHSTPKPPKEKIHLCDICGMGFAKKNKMVVHQRVHTGVKPYPCRHCPKSFSKSGERNCHERIHTGERPYSCEYCGKAFRQSAPFKVHIRTHTGERPYVCDICVKGFTTNQGYQNKIRLKIPKKRTKRRRSTTKYSDSDCDTEDIPLRRRSLRKSTVTVPDIDEDKLKEEELVINYSLDSESDFEPPKPKRTLKLKNKVPKTGKKRKYDSSKTWECKKCPQVFITFNLLRDHRKTHSKKDVPENHTYKFDIIQDLYICNTCSAEFQDETEVKNHMKDRHENEYSCTQCDKNFKTLYEMGSHSGTHHPEGHVTCPLCSYKSPKKGALLIHINYVHLKKFAYFCQKCGKGFNDHLLFKEHENEHLGVRPFACVVCGKSFTYTRYLYTHQVRAHRVPIDGQLLPNQCPYCSRKYSKTETLEKHLEETHFKPGPHEKKHLCDTCGKGFAQRSKLVIHERVHTGYKPYACRYCEKCFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRIHTGEKPYECQFCLLRFSSRGALNLHKNCSAIILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -