Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: -
Assembly: GCA_963920685.1
Location: OY987331.1:34639623-34642597[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0067 2.2 11.9 0.0 2 22 128 148 127 148 0.95

2 13 8.6e-05 0.028 17.8 7.5 1 23 156 178 156 178 0.99

3 13 2.8e-07 9.3e-05 25.6 0.5 1 23 184 206 184 206 0.98

4 13 1.2e-06 0.00039 23.7 2.3 1 23 212 234 212 234 0.98

5 13 6.9e-05 0.022 18.1 1.4 1 23 240 262 240 262 0.98

6 13 0.002 0.65 13.6 0.2 3 23 274 294 272 294 0.97

7 13 7.3e-05 0.024 18.1 1.0 1 23 302 324 302 324 0.97

8 13 8.9e-06 0.0029 20.9 4.6 1 23 330 352 330 352 0.97

9 13 5.6e-06 0.0018 21.6 1.5 1 23 358 380 358 380 0.98

10 13 2.8e-07 9e-05 25.7 1.1 1 23 386 408 386 408 0.99

11 13 8.3e-06 0.0027 21.0 1.2 1 23 414 436 414 436 0.99

12 13 0.00079 0.26 14.8 0.7 1 23 442 465 442 465 0.96

13 13 0.00012 0.039 17.4 0.5 1 23 471 494 471 494 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0067	2.2	11.9	0.0	2	22	128	148	127	148	0.95
2	13	8.6e-05	0.028	17.8	7.5	1	23	156	178	156	178	0.99
3	13	2.8e-07	9.3e-05	25.6	0.5	1	23	184	206	184	206	0.98
4	13	1.2e-06	0.00039	23.7	2.3	1	23	212	234	212	234	0.98
5	13	6.9e-05	0.022	18.1	1.4	1	23	240	262	240	262	0.98
6	13	0.002	0.65	13.6	0.2	3	23	274	294	272	294	0.97
7	13	7.3e-05	0.024	18.1	1.0	1	23	302	324	302	324	0.97
8	13	8.9e-06	0.0029	20.9	4.6	1	23	330	352	330	352	0.97
9	13	5.6e-06	0.0018	21.6	1.5	1	23	358	380	358	380	0.98
10	13	2.8e-07	9e-05	25.7	1.1	1	23	386	408	386	408	0.99
11	13	8.3e-06	0.0027	21.0	1.2	1	23	414	436	414	436	0.99
12	13	0.00079	0.26	14.8	0.7	1	23	442	465	442	465	0.96
13	13	0.00012	0.039	17.4	0.5	1	23	471	494	471	494	0.97

Sequence Information

Coding Sequence: atgactgATATACAGTTAGAACCCGTAGATCAGTTTAATTGTTCCGCACCTGTGAATCAAAATGTACATCCTGAAAAAGTGAACGAGTTTAGTGAAAATGAGGAAAATACTGAACAAAAagatattgtaaataatgtttcaAAATATATGGATCTACAAAACCAGTTTAAAGGAAACGAAGTGAAATATAATGATAAAATTATGGACACCGAAGAATACCAAAAATCACAGCAACTAAATGATTTTTTGCGAATGTCACTTCACATGACTGGGGAATACTCTGGAAATTCTTCTGAATGTAACCAGGGCGATAACTCGAAACAAGACGATGAAAGTGATGATACTGATGACACTGAATCTTCATCAAATGAAGATGATGTTCAATGCGACATTTGTCAAAGAATATTTTTGGATAATGATGACCTCAATCTTCATATTAGATCAAGAAGAATGGATGATAAAAGATATCGATGCTGTAACTGTCATAAAACATTCCGTGATAACACACAACTTAAAGTGCATGCCAGGAAACACACTGGAGAGAAACCATTTGAGTGCAATATTTGTGCTAAAAAATTTACTGTCAATGGCAATTTAAATAAGCATATGAGAATACATACTGGTGAAAAGAGGTTTGAATGTACAGATTGTGGAAGAAAATTCACACAATTTGCACACCTAGAAGACCATCTTAAAACccattcagGTGACAGACCTTTTGTTTGTAATTATTGTCAGGCAGCCTTTAAAACCAAAGCTAGATTAAGAAAACATGAAAAAAGTCATACTGATGGCAAGCCTAGTAAGCGAGCCGTAAACTGTCCAAAATGTAGTATTGTTTTAAAAAGCAACAGACAGTTAGCAAcTCACCTGATAACACACGTTCAAGACAGCGATGGCCCGTTTGTATGTCATCTTTGTGGCCAGGCATTCGCCAAGCATGCAGACTTGCAGGAACACCAGATTAATCATGCAGACGTTAAAACGTTCGTCTGTCAGTGTTGTGATAAAGCTTTTAGTAATGCTAGTCACCTAAGAAGACATATGAACTCTCATTCAGGTTTTCGTCCTTATGCTTGTGACATCTGCCACAGGGTTTTTCCAAATGGACAAAACTTAACCAGACATAAACGAACTCATGATGgttttcgaCCCTACAGTTGCAGCGTATGCAAACGACCCTTTCCTTCTTCTCAAAACCTAAAACGTCATATGATGACTCACACCGGAGAGAAACCTTACACCTGTACAGATTGTGACAGAGGATTTTTGACCTTGGAAAACTTAAACAGACACAGAAGGACTCACACGGGCGAGAAACCATTTGCTTGTGAAATTTGTGGAAAGCTATTTGCTCATAGTACTACTGCCAAGGAACACTACAGATCAGTCCATACAGGAGAAAAACCATTCGTCTGTCCAAAGTGTGTCAAGAGCTTTGCCATCAGCAAAATGTTATACAGACATATCAGAGAGAGACATCCAGACTATTTTCCACAGTTTAAAAAAGAACAGAGTGTTACACCCAATATGAAAAAGGCCCAAGAAAAAATTCGGATGAGTGTTAAGAACGAGGATGAGATTAAGACTGAGCATGATGATGAAGCCAAAGTATTGAGTAATGTGAAAGTAAAGGAAGAACCTATGGATGAAGAAGATGTATCTGATAACTATAACCATAAActagaagaaaataaatttaaagtggAGTGTCTCGATGTTCctgtagaaaataattttaaaactggtGTAAGTGTGAAAAGTGAAAGAATTGAAGACACATTAAAAACTGAAAACTCTCAAAATGGACAATTTATAGACACTTCAAAATGCGAAGAGAGTGAAGAGGCACTAGTTTCTTTAAAGAATGAAAATATGGATATTCCTTTTGTAAAAGTTGAAAAACAAGATGATGACATCAGTGAACATGATTATGGCTtataa
Protein Sequence: MTDIQLEPVDQFNCSAPVNQNVHPEKVNEFSENEENTEQKDIVNNVSKYMDLQNQFKGNEVKYNDKIMDTEEYQKSQQLNDFLRMSLHMTGEYSGNSSECNQGDNSKQDDESDDTDDTESSSNEDDVQCDICQRIFLDNDDLNLHIRSRRMDDKRYRCCNCHKTFRDNTQLKVHARKHTGEKPFECNICAKKFTVNGNLNKHMRIHTGEKRFECTDCGRKFTQFAHLEDHLKTHSGDRPFVCNYCQAAFKTKARLRKHEKSHTDGKPSKRAVNCPKCSIVLKSNRQLATHLITHVQDSDGPFVCHLCGQAFAKHADLQEHQINHADVKTFVCQCCDKAFSNASHLRRHMNSHSGFRPYACDICHRVFPNGQNLTRHKRTHDGFRPYSCSVCKRPFPSSQNLKRHMMTHTGEKPYTCTDCDRGFLTLENLNRHRRTHTGEKPFACEICGKLFAHSTTAKEHYRSVHTGEKPFVCPKCVKSFAISKMLYRHIRERHPDYFPQFKKEQSVTPNMKKAQEKIRMSVKNEDEIKTEHDDEAKVLSNVKVKEEPMDEEDVSDNYNHKLEENKFKVECLDVPVENNFKTGVSVKSERIEDTLKTENSQNGQFIDTSKCEESEEALVSLKNENMDIPFVKVEKQDDDISEHDYGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -