Pter066059.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987330.1:12930925-12939240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00014 0.044 17.2 0.2 3 23 55 76 53 76 0.94 2 20 0.058 19 8.9 0.1 1 23 85 108 85 108 0.92 3 20 0.00072 0.23 14.9 4.1 1 23 114 137 114 137 0.97 4 20 0.0019 0.63 13.6 2.2 3 23 147 169 147 169 0.91 5 20 0.0017 0.55 13.8 5.5 1 23 176 198 176 198 0.98 6 20 0.00039 0.13 15.8 1.8 1 23 205 227 205 227 0.98 7 20 0.0024 0.79 13.3 0.1 1 23 233 255 233 255 0.94 8 20 2.2e-05 0.007 19.7 0.6 2 23 270 292 269 292 0.97 9 20 1.7e-05 0.0055 20.1 0.7 1 23 298 321 298 321 0.96 10 20 6.8e-05 0.022 18.2 5.3 1 23 327 349 327 349 0.98 11 20 0.00015 0.047 17.1 1.2 1 19 357 375 357 376 0.97 12 20 0.43 1.4e+02 6.2 0.1 2 23 387 407 386 407 0.94 13 20 7.7e-06 0.0025 21.1 0.5 1 23 412 435 412 435 0.97 14 20 0.096 32 8.2 0.2 1 23 441 464 441 464 0.92 15 20 0.00012 0.038 17.4 0.6 3 23 472 493 471 493 0.97 16 20 0.0017 0.55 13.8 0.1 2 23 504 527 503 527 0.90 17 20 0.25 80 7.0 7.6 1 23 534 557 534 557 0.94 18 20 1.7e-06 0.00056 23.2 2.4 1 23 565 587 565 587 0.99 19 20 0.00022 0.073 16.5 0.3 1 23 593 615 593 615 0.97 20 20 0.00082 0.27 14.8 1.9 1 23 621 644 621 644 0.92
Sequence Information
- Coding Sequence
- ATGACAATATGTTCTTTAAGACAATGTAGCATATGCAAAACCTTGATCGCCGTAGAGAAATATCGAAACCACCTAATTTTCCACCAACTCAAGGAGAAAATTGACAAGGAAATAGCAGAGAACCCTGAGCCGAAGATAAAGTTGAAACCAGCCCCGTTGGCGTGCGACATTTGCCAAAAAGTTTTTCCCAGAAAAGATGCTCTTTTGGTTCACAAAACGCGGAAGCACGTCGATAAAGACAAGAGAACTCACTACCAGTGCGACATGTGCGGCCAAATGTTCTTGGCAAAAAGTGGAGTTGACTCACACATCAAGAGGGCACATTTAAAAGAGTTTAAGTATCGGTGCCAGCATTGTGGCAAAGGTTGCATTTATCTTGGTGAATTGAACCATCACGTGAAGAGCGTCCACGATAAAAACGAAGTTACTCTGATTGGATGCACTTATGATAACTGTAACAAGGTGTTTAAGACTCAAGGTGCTCTAAAGTACCATCTACATAACCATCTGGAAAACAAGCCGACGTTTGTATGCGAACAATGCGGAAAAGTGTTCAATCATCCTCATCTCCACTCGCGACATCTGCGTTCGCACAGGGTTGAGGGGAGGACGTACGTCTGCAACATTTGCGATAAAGAAATGTCGACTTTTTGTAGCTTGGAGAATCACATGCGACTGCACAGCGGTGAACGGCCTTTTATCTGCGAGCATTGCGGGCGGGGCTTTAGAACCAGACCGATCTTAGCAGCTCACTTGGTGGTGCATACTCGAGAGAAGAATCACGTTTGTAAGGGGCCGACAACCGTTCAATGTGATCAGTGCCATAAACTGTTTGCCAGAAAAAGAAACCTCATAGCTCACATTGCTACAATTCACACTAAACAACATAGATTTAAATGTCCTAAGTGCAACATCGGCTTTTATCAAAACAGTTCTTTTAAGCGACATGTCGAGATCGTACATGGAAATCGACATCCGTACCAGTGCAAGATTTGTGATAAGAAGTTTAAACTTCAGACGTATTTGAATTCGCACTTGCACAAGCATAATCCTGACAGCAAACACAGATACCAATGTTCCAATTGCGATAAGTTTTTTTCTTTCCGAGAAAGCTTAATGAGACACGAACCTAGATGCAGAGGATTAACCACTCTAATCAAATGCGAAGTATGTGAGAAAATGGTAGATAGCTCCAAGATGTACGACCATGTTAGGGCTCATGGCGAGAGGAAATTCGAATGCGACGTGTGCAACAAGAAATTCAGAGAGAACTGGTACCTGAAGAAGCACATTATCATGGTTCACCAGGGAGGTTATAAGCATCCCTGCGACATATGCGGTCAGTTGTACGCTACAAAAAACTCAGCTGAAATTCACAAGAAGGCAGTTCATACGAAAGAGTACAACTCGTTTTGTGATGAGTGCGGCAGGGGATTCGTCAACCTCAACCAGCTCAACATTCACAAAAGGAGAACCCACAAAACCGATGACCAACCCGTAAGATTAATTTCGTGTCCCATACAAGGTTGTGATAAGATGTACAGGTCTCAAGCTTCGCTCAAACTCCACCTGCCCACCCATGCGGATGAAAAACCTTCTCATCCTTGTCCTCACTGTTCCAAAATCCTACACCACCCTATTTCTTTAAGACATCACATAAAATTTAACCATAGCGACGGACCTAAACCTTGTTATAAATGTCACTTATGTGGGAAAGAACTTACGTCACAAACAAGCCTTAGGGATCATATTAGAACTCACACGGGAGAAAAACCGTATCAGTGTGAGTTTTGTGAAAAAGCATTTAGTAGAATAATGCTGTTGAGGGTTCATCGAGTGGTTCACACGAAAGAGAGGCCGTATGTTTGTAAGAGTTGTGGGAAAGGGTTTACGCAGCATGGATCAATGAAAGCCCATTTTGTTAAAAGCCATCCTGATGAGCAATGGGCTACTGAGGGAAGAAGCTGA
- Protein Sequence
- MTICSLRQCSICKTLIAVEKYRNHLIFHQLKEKIDKEIAENPEPKIKLKPAPLACDICQKVFPRKDALLVHKTRKHVDKDKRTHYQCDMCGQMFLAKSGVDSHIKRAHLKEFKYRCQHCGKGCIYLGELNHHVKSVHDKNEVTLIGCTYDNCNKVFKTQGALKYHLHNHLENKPTFVCEQCGKVFNHPHLHSRHLRSHRVEGRTYVCNICDKEMSTFCSLENHMRLHSGERPFICEHCGRGFRTRPILAAHLVVHTREKNHVCKGPTTVQCDQCHKLFARKRNLIAHIATIHTKQHRFKCPKCNIGFYQNSSFKRHVEIVHGNRHPYQCKICDKKFKLQTYLNSHLHKHNPDSKHRYQCSNCDKFFSFRESLMRHEPRCRGLTTLIKCEVCEKMVDSSKMYDHVRAHGERKFECDVCNKKFRENWYLKKHIIMVHQGGYKHPCDICGQLYATKNSAEIHKKAVHTKEYNSFCDECGRGFVNLNQLNIHKRRTHKTDDQPVRLISCPIQGCDKMYRSQASLKLHLPTHADEKPSHPCPHCSKILHHPISLRHHIKFNHSDGPKPCYKCHLCGKELTSQTSLRDHIRTHTGEKPYQCEFCEKAFSRIMLLRVHRVVHTKERPYVCKSCGKGFTQHGSMKAHFVKSHPDEQWATEGRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -