Pter003463.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- ehn-3
- Assembly
- GCA_963920685.1
- Location
- OY987326.1:37730604-37741929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.7e-05 0.0054 20.1 0.3 1 23 199 221 199 221 0.95 2 23 0.16 52 7.5 1.8 1 21 227 247 227 250 0.95 3 23 1.9e-05 0.0063 19.9 0.5 1 23 256 278 256 278 0.97 4 23 0.014 4.7 10.8 1.3 1 23 284 307 284 307 0.97 5 23 2.5e-07 8e-05 25.8 0.9 1 23 313 335 313 335 0.99 6 23 9.3e-07 0.0003 24.0 2.9 1 23 341 363 341 363 0.97 7 23 4.3e-07 0.00014 25.1 1.6 2 23 370 391 369 391 0.97 8 23 0.0013 0.43 14.1 1.5 1 23 397 419 397 419 0.98 9 23 0.00046 0.15 15.6 1.3 1 23 425 447 425 447 0.98 10 23 0.0085 2.8 11.6 0.1 1 23 453 475 453 475 0.90 11 23 0.00046 0.15 15.5 1.1 1 21 481 501 481 502 0.95 12 23 0.00062 0.2 15.1 2.9 2 23 520 541 519 541 0.96 13 23 0.051 17 9.1 0.2 2 23 548 569 548 569 0.96 14 23 4.3e-06 0.0014 21.9 3.8 1 23 575 597 575 597 0.98 15 23 0.22 71 7.1 0.3 1 23 603 625 603 625 0.95 16 23 0.011 3.6 11.2 1.3 2 23 632 653 631 653 0.96 17 23 0.22 72 7.1 0.0 1 23 661 683 661 683 0.89 18 23 3.2e-06 0.0011 22.3 3.5 1 23 689 711 689 711 0.96 19 23 0.00017 0.056 16.9 5.1 1 23 717 739 717 739 0.98 20 23 0.0014 0.44 14.1 0.6 2 23 746 767 745 767 0.96 21 23 0.0013 0.44 14.1 1.3 1 23 773 795 773 795 0.99 22 23 0.029 9.5 9.9 2.7 1 23 801 823 801 823 0.99 23 23 0.0037 1.2 12.7 1.0 1 21 829 849 829 850 0.92
Sequence Information
- Coding Sequence
- ATGTGTAGGAGCACTGCGCTCTTGGTAAACCCGAGCAAAACAGAGCTCATCATGCTTACAAAAAGAAGGTTTGCAGGTTTCAGTGCCCCATTACTCTATGATAAACCACTCCCCAAGGAGGAGACACACATACTGCATTGGTTGTACACCGCGGTGATAAGACCTAAAATCACGTACGCATCGGTGGTCTGGTGGCCCGCAGTGAAGACAATCACCTACGGCCTGACATTGGCGGGTCTGCAAGGACTAACCCGTCTGGGAATAACTGGAGCAATGAGAACAACTCCAGAAGCGGCTCTAAACGTAGATATCCTCACGAGGGAGAAAGCAAAAAATGAAGCCCAACCCGAAGGCTATCAGGTCTTGTGTAGTGGACGGCTTAAGGATGGCTGGCACAGAGCTGGCCGGGAACGGGCTATATCGAGAAGACACGGGAGAAGGACAGGCATTTCCTTTGGGATGATACACCACTGTGTTCCAAGCCGAGGTCTTCACAATTCTCAACCAGAGAGGAGGTCCCTAAAAAATCTGACCCCAGAAGTACATCAACGTGCATCTTTAATTTTGGGTACAAAAGAAACTGACACAAGACACTTTGTTTGTGATGTTTGCGAGAAACCTTTCCGAAATACAGGAAATCTGAAACGACACAAAGTAATACATTCTGGAGAAAAAAAATTCGAATGTAATGAATGTCCCTCACGATTTGGCCAAAACAGCATATTACAACAACACATAAAATGCCGACACATGGGTGAAAGACCGTTTAAGTGCAATATGTGCGGTAAATTATTTTCAACCATTTGGAACTTGGAGAGACACAATATGATACACACTGGCGAAAAGAAATTCGAATGCTACGAATGTAGCGCTCGATATGCTCACAAGTCAATTCTAGCAAAACACATTAGAAGTAGGCATACTGGCGAAAGACCTTTTAAATGTGAACTATGCCCTAAAGCCTTCACCGCTAGGTCAAACTTAACTAGTCATATGAAAACACACCAGGGCATTAGGCCATATATATGTGACATTTGTGGGCATCACTTTTCTCAGAAGTCAAATTTAAAGAAGCACATTCTGGGTCATTCCGGAGAAAAGACAGTTGAATGTAATGTTTGTCATAAAATGTTTTCTACTAAATATAACTTACAGTCTCACATGGAGGTGCACAATGGAGAAAAGCCATATTTCTGCGATATATGTTACGAAAATTTTAGACACGCCACACCTTTACAAGTGCATCGAATGACGCATTTTGGTAAAAGACCCTTTACGTGCAATATTTGTGGGATGAACTTTTTGCACCAATCAGGATTAACCATCCACGAAAAAACCCACTCTGGAGATAAACCTTTTGCATGTCCTGTGTGCGGCAAAAGATTTGTCAAGGAGTCGATAGTTGCTAGTCATATGACGCTCCACACGGGCGAAAAACAATTTGAATGTTTCATGTGTGGACGAAAATATGCCGACAAGTCAAAGTTAAATTATCACCTAAAGAAAAAATGTCTTAAAGGCATTGGTATGTCGagTGACGACCAAGGCGGAAATGTTTCTTGCGATCACTGTGACAAGACCTTTAAAAATAAGGAAAGGATGATGGTTCACCGGATGCAACACTTCGGAAAACAGCCACCGACTTGCGAGATTTGCGGTGGCCAGTTCGCAAGCAACGGGTCTCTAAACTTCCATCGGAAAATCCACATGAACAGAAAACCCTACAAATGCAAAGTATGCAACAGGCAGTTTACCAGCAAATCGAACTACCGCAGACACGCCCAGAGTCACACAGAAGATAATTTTTACGCATGCGACCAGTGCGAcgaggtatttttaaattttcaacgaTTGAGAGTTCATAAACTTATTCATATAGGCAAAGATCCGTTGGTATGTGAAATTTGTAACATGACTTTTCCTTATAAATCCGCTTACGAGTGTCATAGAAACACGCATTTAGATAAGTCCGAGCAGCCCTACCCCTGCGACATTTGTGGCGCTCGATTTGCTATTAAATCGATCATGGTGACACATAGGATCATTCATTTCGGAGAAAAACCTCATTCTTGCACTATGTGCGATATGAGATTCACCCAAAAGTCCAATTTGAAAAAGCATATTTTGTTGCATTCCGGTGAAAAGCCTTTTACTTGCGATATATGCAAGAGGAAGTTTTTTACTAAGCATACTCTGCAGTCTCACTTGGAAACCCATTATGGGGCTAAACCGTGGAAATGCAACGAATGTGAGGAAGGTTTTAGGCATAAAGCCCGGCTGGAAGTTCACAAATTGGTTCACGTAGGAAAAGAACCTTATAAATGCGATACATGCAATGCGCTTTTTGCTCACAGTTGGACTTTGAGAGCTCATAAGCTAACACATGAAGGACAAAAGCCCTTTCAGTGCACCGTATGTTGCAAAAGGTTTGTAAAACAATGGATTCTTAACAGTCATATGAGAATTCACACTGGTGATTATCCTTTTGAGTGTCATATATGTGGAAGGCGTTACGTTGATAAggctaaattaaattttcaccaaaaacaaAGATGTTTAAATCCGGAAGTTCCTCGgtccaaaatttttaaaaatcgagCCCCGATTAAAGTAGAAGGTATTGAATGTATTCCAGAATTTGTCGAAACAATATCTACCTCTGTAGCAGTCTGA
- Protein Sequence
- MCRSTALLVNPSKTELIMLTKRRFAGFSAPLLYDKPLPKEETHILHWLYTAVIRPKITYASVVWWPAVKTITYGLTLAGLQGLTRLGITGAMRTTPEAALNVDILTREKAKNEAQPEGYQVLCSGRLKDGWHRAGRERAISRRHGRRTGISFGMIHHCVPSRGLHNSQPERRSLKNLTPEVHQRASLILGTKETDTRHFVCDVCEKPFRNTGNLKRHKVIHSGEKKFECNECPSRFGQNSILQQHIKCRHMGERPFKCNMCGKLFSTIWNLERHNMIHTGEKKFECYECSARYAHKSILAKHIRSRHTGERPFKCELCPKAFTARSNLTSHMKTHQGIRPYICDICGHHFSQKSNLKKHILGHSGEKTVECNVCHKMFSTKYNLQSHMEVHNGEKPYFCDICYENFRHATPLQVHRMTHFGKRPFTCNICGMNFLHQSGLTIHEKTHSGDKPFACPVCGKRFVKESIVASHMTLHTGEKQFECFMCGRKYADKSKLNYHLKKKCLKGIGMSSDDQGGNVSCDHCDKTFKNKERMMVHRMQHFGKQPPTCEICGGQFASNGSLNFHRKIHMNRKPYKCKVCNRQFTSKSNYRRHAQSHTEDNFYACDQCDEVFLNFQRLRVHKLIHIGKDPLVCEICNMTFPYKSAYECHRNTHLDKSEQPYPCDICGARFAIKSIMVTHRIIHFGEKPHSCTMCDMRFTQKSNLKKHILLHSGEKPFTCDICKRKFFTKHTLQSHLETHYGAKPWKCNECEEGFRHKARLEVHKLVHVGKEPYKCDTCNALFAHSWTLRAHKLTHEGQKPFQCTVCCKRFVKQWILNSHMRIHTGDYPFECHICGRRYVDKAKLNFHQKQRCLNPEVPRSKIFKNRAPIKVEGIECIPEFVETISTSVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -