Pter066026.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987330.1:12709339-12726817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.079 26 8.5 0.7 1 21 89 109 89 110 0.95 2 35 0.0038 1.2 12.7 3.0 2 23 121 143 120 143 0.95 3 35 0.0018 0.6 13.7 1.9 1 23 183 206 183 206 0.94 4 35 0.34 1.1e+02 6.5 4.6 1 23 212 234 212 234 0.95 5 35 4.1e-05 0.013 18.8 0.4 1 23 246 269 246 269 0.97 6 35 0.012 4 11.1 0.6 1 23 281 304 281 304 0.94 7 35 0.011 3.6 11.2 1.8 1 23 310 332 310 332 0.94 8 35 0.0016 0.51 13.9 2.2 1 23 338 361 338 361 0.93 9 35 0.052 17 9.1 3.6 1 23 367 390 367 390 0.95 10 35 0.21 68 7.2 1.0 1 23 527 549 527 549 0.97 11 35 0.11 34 8.1 2.4 1 23 553 575 553 575 0.98 12 35 0.13 41 7.9 4.1 1 23 610 633 610 634 0.93 13 35 0.0012 0.39 14.3 2.0 1 23 643 666 643 666 0.97 14 35 0.022 7.1 10.3 1.2 3 23 674 694 673 694 0.98 15 35 0.00025 0.081 16.4 2.8 1 23 700 722 700 722 0.96 16 35 1.7e-05 0.0054 20.1 0.2 1 23 728 750 728 750 0.98 17 35 0.03 9.9 9.8 0.1 2 23 927 948 926 948 0.90 18 35 5.2 1.7e+03 2.8 4.6 1 23 954 976 954 976 0.97 19 35 0.0077 2.5 11.7 1.3 1 23 982 1004 982 1004 0.89 20 35 0.00031 0.1 16.1 3.6 1 23 1010 1033 1010 1033 0.98 21 35 0.00074 0.24 14.9 5.5 1 23 1045 1067 1045 1068 0.95 22 35 0.0058 1.9 12.1 1.0 3 23 1079 1099 1078 1099 0.98 23 35 1.8e-06 0.0006 23.1 0.7 1 23 1105 1127 1105 1127 0.97 24 35 2.5e-05 0.0082 19.5 0.7 1 23 1133 1155 1133 1155 0.98 25 35 0.047 15 9.2 0.1 1 21 1161 1181 1161 1182 0.94 26 35 0.11 36 8.1 0.1 2 23 1273 1294 1272 1294 0.90 27 35 3.9 1.3e+03 3.2 3.1 1 23 1300 1322 1300 1322 0.97 28 35 0.0022 0.73 13.4 0.6 1 23 1328 1350 1328 1350 0.91 29 35 0.00027 0.088 16.3 3.4 1 23 1356 1379 1356 1379 0.98 30 35 0.00026 0.083 16.4 3.4 1 23 1391 1414 1391 1414 0.94 31 35 0.03 9.7 9.9 0.9 3 23 1425 1445 1424 1445 0.98 32 35 5.3e-06 0.0017 21.7 0.2 1 23 1451 1473 1451 1473 0.97 33 35 3.1e-07 0.0001 25.5 1.3 1 23 1479 1501 1479 1501 0.98 34 35 0.00051 0.17 15.4 0.1 1 21 1507 1527 1507 1528 0.96 35 35 0.00031 0.1 16.1 0.1 1 23 1556 1578 1556 1578 0.97
Sequence Information
- Coding Sequence
- ATGGACCCCTCTACTGCTGCTGGTGTTAGTGCTGCTTTTATCATAATAGCTTCCCACGCCCAGAGACGAAAAAGAAGATGGTGGAGCGACAAAATTGCAGTTTTGCTAATAGGCTTGCTTTTTAGACCTCCCGCCAGAAGAAAATACAACAGGAAGAAAATTTTTAATGCGATAAACGAACCTAGCGGGGAAGCCACGAACCAAAAATCGGAAAAGGACGAACCTGTGAAACGATATGTCGATAtcaaaatcaaaacaatttctTTCTTTTGTAGAAAATGTAACAGTAAATTTAACACCGAAAATGAACTTGTTGAACATATGAAGGAGGAAGAGGAGGAGGCTAATTATGAGACCTGCGAGTGTAAAATATGCAATAAAGTGTATAAAAACCAGAAGATCCTTCGTACGCACATAAAGAATCTTCACGCGACACCAAGAACCACATTTTCTTGCTGTGGCCAAATCTTTATCAAAGAAGAAAAATTTCAGTTTCACAGAAATAAATTTCACAACGATGAACTCGAGAGACTTCCCAGTGAAGAATTTCTTTGCAAGTATTGTAAAAAGACCTTTCGCTCGTACCAAACGGTTCAGGATCACATCAACAACATACATACGAAGGACCAAGCGTACCTATGTAACATTTGTGGCAAAAAGTACCATTCTTTGGTAATACTCAGACATCATACGAAGAAACACGATGAGGATGTAGAAGTGAAAATCAAAGTGGTGTATGAATGTCCGTACTGTGGGAAAGAATGTCGCACTGCCGAGTCCTTGGATGCTCACACAATTACATCGCATACTGAGAATTTTGACAAGCTCATTGATGGTAGATACAAATGCAAGCACTGTGGCAAGGAAACAGTTGCAAAAGTATCAATGGAAGAACATCTTAATGCCACTCATCTTCTTAACAACTCCTTTCTCTGTGACGTCTGTGGCAAGGACTGTTACTCAACAGCCTCTCTACGAAAACACAAAATCTCACATTTGAAGTTCAGGCAGTTCCAATGCGCTCTATGTTCCAAAACGTTTAAACAACAGAATGATGTTAGGAAGCATTATTTTAATGTACATGATCCTTCAAAGAAACACACGTGTTTACTCTGCAACACTGACTATAGAAGCGAAACTTCTCTAAAGAAGCACCAAGACAAATATCACGGAGGATGGGACGGTGGAGAGAAAGTGTATGAAATTAAAGAAGGCCAAGGAATATGTATTAAAGAAGAAGAGGAAGGCACAACAGTGAGTAATCCAGATCAAAGCAGTTTAGGTAATGTAGAAACTTTAATAATAGACGATGCCCCTGGATCAGCAGATGGTGGAAGCGAATCTTCGGATGATGATATGGATACAACCCATTACAAAGTTGTAGAGGGAGAGTCTAACGATGAAGGTGGAGCTGAGGAAGGAAGCATTACAATTTATGAgagaaaaaaaaataagaagcAAAACACTGGAACGGAGAATGATGATGAATTGCAAAAAAACCTAGAAGAGTTGCATCGACTGTTCGTTGCAGCCTCTAAAAATCATGCCCTCAGCACCGAGGCCGATCATAAAATTCGGTTTACTTGCGAAGTGTGCGATTATACCGCCAAGCATAGCTTGGATTTTGCGTTACATTCCAAGGTACACGCCGAAAAATTTTATTGCCAGTATTGCACGTATAAAACGGGAAAAGAGATAAACATGGTAAAGCACATGAAAAGACACGGGTCCACCAAAAAGGTCCACCACTGCTCAGTATGTTACGGGACGTTCTTTGAAAGCATCCAGGCcgaagaacataaaaattttcaTTCGGGGGAGATGCCGTATAGCTGTGAGATGTGCGGGAAACATTTTATGTTTTCTTGGTTATTCAGTGCGCATAACAGatttttacaTCATGGCATCGCCAAAGAAGACCACTTATACTCTTGCCTTTTATGTAAACTAACCTTTGGAACCAGATCAGGTTTAAAGAAACACCAAAGTCGCAAGCATCAACCCAAAATACAAACCCTGTGTGATATATGCGGCAAAAGTCTCTCCAGCACCGAGACCTTAAAGTTTCACAAGAGAACTCACTCGGGGTATAAGCCCCACATTTGCAGTACCTGCGGCAAAAGCTTCTGCAAAAAAGGCCTGTTGGTTGAACACGAGAGAGTGCACACTGGCGAGAGACCTTTTGTGTGTAGTATTTGTCAGAAGGGCTTTAGCCAAAGGGGACCTTTAAAGATCCATTTGAGGATACATACAGGCGAGAGGCCGTTTGTCTGTAGATTTTGCGGTAAAGGGTGTATTTGCAAGAGCGTTTTGGACTCGCATTTGAGGATTTGTTCTGGAGCTATGACGTACTTCGACACGTCGATTCTCAACAACTTGATATACGGACCAGGAATTTCTATAACTCCAATCAAGCCCGAAAATTACGACTATTCTTCGTATACTGGCAACAACTTTAACCCCTCCAGCAATATCTTTAATTACAATAACTTCGATAACTTCGCCAGCGTTAACCCTTTCAACGGTCTGGCTAGTTCAGTCCTGACCAAAATCTTAGAGCCACAAGTGAAGGTCGCTGACGCTGTCGCTATTCCAAAGGAAGAAGTGAAAGCTGAGGAGCCGGTGGAACCAATATTGAAAAGTGTACATGTAGCGGATATAAAGCAAGAGGATAACATTCTTAATTGCCTATTGAAGACCAccaaaaagaagaagaaagatAAAAAGGAGAAGAGTGTTGAGAAGCATCCTCCCCCTATAGAACTAGATGAACCTATTGAGTGTGATCAATGCAACGAGACGTTTAAAAACAACGTGGCTTTTGCGTTACACTCTATAGATCATGCCAAGGATAATAAGTACTACTGCCACCTGTGTGACTTCAAGAACACTTCCAAGTACCACATAGAGATGCATGTGAGGGCTCACGAAGGCACCACCAAGTACAAATGCGAAATTTGCGGCAAGGCATTCACAATAAGTACACATGCCATCGAACACAAATATTTTCACACTGGAGAGAAGCCTTTTCAATGCGAAATTTGTGGGAAGCATTTTATGTTCTCGTGGTTTTTGACGTCACATAGGAGGACTCAGCACTGGGAGATTGTCACTGGAAGCCCTCTGGTAAAATATGACTGCAATGAATGTAATAAGCATTATACTTCGTCTACTGggcTTAAGCGTCACAATATGACTCACCATGGGTCACCAGGCGTCGACACGTCAGTGTTATGCGACATTTGCGGCAAAAGCCTGTCCTCCAAAGAGAAACTAAAGTTTCATCGTCGGATACACACTGGATACAAACCGTTTGCGTGTGAAATATGCACGAAAAGTTTTTCTCGAAAGGAACAGCTCAAAGAGCACGAGCGAGTTCATACGGGGGAAAAGCCTTACATTTGTAGATTTTGTGGAAAAGGCTTTACGCAGAGGTCACCGTTAAGGATTCACGAACGCACTCATACGGGAGAACGACCTTATACGTGCATGATATGTCAAAAGGGCTTTATTTCGAAGGGTGTTATGGATACCCATATGAAGAGTTGTTCGTTGGCTAGAGGTGCGACCCCGAGAAAAAAACGAAAAAGTAAAAAGTTAAAACAAGATAGCGACCCCGATTACGAGGTAAAAGTTAAAGTAGAAAAGGACGAAGCGGAAAATGACGAGTTTCCCGATAGTGAACAGCCGACGAAAAAATCGAAAAGGGGACGAAAAAAAGGATCGAAAAAAGGTGACAAAATGGGAAAACTAGCTAAAAAAGTGAGGAAAGAACGAGGAAACCATCCTCCTCCCATAGAGTTAGATGAACCGATAGAATGCGACGTCTGCAATCAAACTTACAAAAATAACGTCGCATTTGCTATGCATTCTATAGATCATAgcgacgaaaataaatacaactgcCATTTATGTGACTTTAAAAACGCTTCTAGGTATCACATAGAAATGCACATTAGAGCGCACGAAGGCACTACAAAGTATAAATGCGAAATTTGTGATAAAGCTTTTACTGTAAGTACCAACGCCATAGAGCACAAGTACTTTCATACCGGCGAGAAACCGTTTCAGTGTGAAATCTGCGGTAAGCACTTCATGTATTCCAGATTTTTGGCATCGCATAGACGAACGCAACACTGGGAAATCATGACTGGTACGCCCTTGGTGAAGTACGACTgcaaaatttgtaataaacactATACATCGTCCAGTGGATTAAAACGTCACAATCTTAGAAACCACAATACGGAAGGCATAGACACTAGTGTGCTCTGTGATACTTGTGGTAAAAGAATATCCAGCAAGGAGAAACTGAAGTTCCACATAAGAATCCACACTGGGTACAAACCTTTCGCTTGCGAGGTGTGTGGTAAAGCCTTTACGGAAAAAGAACGGTTAAAAGAGCACATGCGAGTGCACACAGGAGAAAAGCCTTTTGTGTGCAAGTACTGCGGCAAATCTTTCACACAGCGTTCTcctttgaaaatccacgaaaggACTCATACTGGGGAGCAACCATACGTTTGTAGGCTATGTGGTAAGGGATTCGTGTCCAAAAGTGCCATGGACGCCCACATGAAAAGTTGCTCTGCATTACAGATTCCTAGCCAGAACTCCAAGCCGCAGTACATGTACGCGCCTCATCCATTAGAAGATCAGCCTCCGTACAACTGTAGAATTTGTAACAAGATCTACGGGTCAAAAGGTGCCTTGCAAGCTCACATGGTTTCGCATAGTGTCCATAGTGCTTCTTACAGCATGGTGTCGTCGCCAGCTCACAGCTACATCTACCAATCGGAAGATACCGTGGACAATACCACAGATGGGCAACAGCAACAGCTACAGAGTCACATACAAGATATATTGCAAAAACGCCAATTCGCTGCATCTTTAAGCGAATTAATGATACGGAGAGATTTTTCTAATAATGTTATTATTAAACCTGAACTTCTGGTTAATCATAAAGAAGATTCTTTTCTTCCTCAGGATTTTACTCAGAAAAGTGATTTTCCTGAAGATGAAGAGACAACAGAAAAAGTTGCTTATACTGATGAAATCAGCCACTAA
- Protein Sequence
- MDPSTAAGVSAAFIIIASHAQRRKRRWWSDKIAVLLIGLLFRPPARRKYNRKKIFNAINEPSGEATNQKSEKDEPVKRYVDIKIKTISFFCRKCNSKFNTENELVEHMKEEEEEANYETCECKICNKVYKNQKILRTHIKNLHATPRTTFSCCGQIFIKEEKFQFHRNKFHNDELERLPSEEFLCKYCKKTFRSYQTVQDHINNIHTKDQAYLCNICGKKYHSLVILRHHTKKHDEDVEVKIKVVYECPYCGKECRTAESLDAHTITSHTENFDKLIDGRYKCKHCGKETVAKVSMEEHLNATHLLNNSFLCDVCGKDCYSTASLRKHKISHLKFRQFQCALCSKTFKQQNDVRKHYFNVHDPSKKHTCLLCNTDYRSETSLKKHQDKYHGGWDGGEKVYEIKEGQGICIKEEEEGTTVSNPDQSSLGNVETLIIDDAPGSADGGSESSDDDMDTTHYKVVEGESNDEGGAEEGSITIYERKKNKKQNTGTENDDELQKNLEELHRLFVAASKNHALSTEADHKIRFTCEVCDYTAKHSLDFALHSKVHAEKFYCQYCTYKTGKEINMVKHMKRHGSTKKVHHCSVCYGTFFESIQAEEHKNFHSGEMPYSCEMCGKHFMFSWLFSAHNRFLHHGIAKEDHLYSCLLCKLTFGTRSGLKKHQSRKHQPKIQTLCDICGKSLSSTETLKFHKRTHSGYKPHICSTCGKSFCKKGLLVEHERVHTGERPFVCSICQKGFSQRGPLKIHLRIHTGERPFVCRFCGKGCICKSVLDSHLRICSGAMTYFDTSILNNLIYGPGISITPIKPENYDYSSYTGNNFNPSSNIFNYNNFDNFASVNPFNGLASSVLTKILEPQVKVADAVAIPKEEVKAEEPVEPILKSVHVADIKQEDNILNCLLKTTKKKKKDKKEKSVEKHPPPIELDEPIECDQCNETFKNNVAFALHSIDHAKDNKYYCHLCDFKNTSKYHIEMHVRAHEGTTKYKCEICGKAFTISTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIVTGSPLVKYDCNECNKHYTSSTGLKRHNMTHHGSPGVDTSVLCDICGKSLSSKEKLKFHRRIHTGYKPFACEICTKSFSRKEQLKEHERVHTGEKPYICRFCGKGFTQRSPLRIHERTHTGERPYTCMICQKGFISKGVMDTHMKSCSLARGATPRKKRKSKKLKQDSDPDYEVKVKVEKDEAENDEFPDSEQPTKKSKRGRKKGSKKGDKMGKLAKKVRKERGNHPPPIELDEPIECDVCNQTYKNNVAFAMHSIDHSDENKYNCHLCDFKNASRYHIEMHIRAHEGTTKYKCEICDKAFTVSTNAIEHKYFHTGEKPFQCEICGKHFMYSRFLASHRRTQHWEIMTGTPLVKYDCKICNKHYTSSSGLKRHNLRNHNTEGIDTSVLCDTCGKRISSKEKLKFHIRIHTGYKPFACEVCGKAFTEKERLKEHMRVHTGEKPFVCKYCGKSFTQRSPLKIHERTHTGEQPYVCRLCGKGFVSKSAMDAHMKSCSALQIPSQNSKPQYMYAPHPLEDQPPYNCRICNKIYGSKGALQAHMVSHSVHSASYSMVSSPAHSYIYQSEDTVDNTTDGQQQQLQSHIQDILQKRQFAASLSELMIRRDFSNNVIIKPELLVNHKEDSFLPQDFTQKSDFPEDEETTEKVAYTDEISH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -