Pter024527.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- JRKL
- Assembly
- GCA_963920685.1
- Location
- OY987327.1:53677759-53679513[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-09 2.6e-07 33.2 0.0 1 36 15 50 15 60 0.86
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTACGCAAGAAAGTCCAATAGGCAATCATGGGATCCTGATTCCATGGCAAAGGCAATAGAAGCTGTTAATAAGGGTGAAATGGGATGGCTCAGGGCATCAAAACTTTACCATATACCTCAAGCAACCCTAAGGAGGCATGccttgcaaaaaaataaaactttaaaaacaggCGAAAAACGACTGGGCAGGTTTAAACCTACATTGCCCATAGAAATAGAAAGGCAGTTGGTTAATCATTTAAAAGTGCTAGAGTCAAGGTTCTTTGGACTAACAAGACGGGACGTGTTAGAGTTAGCCTATAATTTAGCCGTAAAAAATGGCTTCGACCATCATTTTAATAACCAGAAAAAGGCCGCTGGAAAAGACCGGTTAAGAGGATTTCGCAAAAGAAATCCAGATATAACACTGCGTAAACCCGAAGCCACATCTGCAGCAAGAGCGCAGGCATTTAATAAACCTCAAGTGGCTAAGTTTTTTAAAGTCTTAGAGGACACCTTGCAAAAGGAAAATATTGATCCCTTGAAGATATATAATGCAGATGAATCTGCATTATCTACAGTACAACGCCCTCAGAAAGTGTTTGCTACAGCTGGTCGAAAACAAGTAGGTGCAATTACAAGCACCGAAAGAGGTTCTCACGTGACACTTGCTTGTTGCATGTGTACTAACGGGAATTATATACCGCCTGCCCTAATTTTTCCacgaaaaaatatgaaaaaagaatTAACTGACCATACACCTGCAGGAACTTTATGCATTCCCCAAGAGTCTGGTTGGATGACTGGTCCAGTATTTTTACAGTGGCTGCAACATTTCCAAAAATATGCCAAGGCATCTCTCACCGAAAAGGTTTTGTTAATCGTCGACGGACATTCAAGTCATAAATATCTTGACGCTCTTCTATACGCCAAAGAAAATAGCATTGTGCTTTTGTGTTTGCCGCCACACTGTACCCATCGGATGCAACCCCTTGATGTTGCATTCTTCGGTCCACTGAAAACCTATTATGACCAAGAAATAACCAAATGGCTCAAAGCTAATCCTGGTCGAGTTGTGTCACAATTTCAAATTGGTGGACTGTTAAATAAAGCCTATGGAAAGGCAGCAACTGTCCAGAACGCTACTCATGGATTTGCCAAAACAGGTATCTACCCAATAAACCCCGATGTGTTCCCCTACTATATGTTTCAAGCATCTGAAACTACAAATATTGTATTTGATAATACTGTCCAACCAGTTTCGAATGTTCATATTAATAATAATGCACAACCTGGACCTTCTTGTTCTTCTACCACGGCTCAGAAAAACTTGCAAAATCCAACAAGTGGTGCTTTACTTTTGGTTACTCCAGCTGATTTAAGTCCAGTTCCAGTCGGACCATTTATTTCAGGCCAGGGAAAAAGAAAACCAAGGAAACGTCAAGGCACTTCTATTCTAAACTCTACTCCAAATTTGGAAGAGGCCAAAGAAAAGAGCAAACCGAAACTAGAGATcccagaaaaaagaaaaagagcgGTAAAAAGAAAAGTCCTTAAAGAATCCGAGTCGGAAACAGAAAAAGAACCCTTTTCTGCTGATGAAGAAGATGATGCTGCTTGCATGTATTGTACAGAGCTGTACACATTTTCCAGAAAAGGTGACCTGTGGCTGTGCTGTTGTTCGTGTCAAAAGTGGGCACATGCTGAGTCTGCCGGGCTAGACAAGAAAACAAAACGTTTTGTTTGTGAGCTTTGTACCGACTGA
- Protein Sequence
- MPRNYARKSNRQSWDPDSMAKAIEAVNKGEMGWLRASKLYHIPQATLRRHALQKNKTLKTGEKRLGRFKPTLPIEIERQLVNHLKVLESRFFGLTRRDVLELAYNLAVKNGFDHHFNNQKKAAGKDRLRGFRKRNPDITLRKPEATSAARAQAFNKPQVAKFFKVLEDTLQKENIDPLKIYNADESALSTVQRPQKVFATAGRKQVGAITSTERGSHVTLACCMCTNGNYIPPALIFPRKNMKKELTDHTPAGTLCIPQESGWMTGPVFLQWLQHFQKYAKASLTEKVLLIVDGHSSHKYLDALLYAKENSIVLLCLPPHCTHRMQPLDVAFFGPLKTYYDQEITKWLKANPGRVVSQFQIGGLLNKAYGKAATVQNATHGFAKTGIYPINPDVFPYYMFQASETTNIVFDNTVQPVSNVHINNNAQPGPSCSSTTAQKNLQNPTSGALLLVTPADLSPVPVGPFISGQGKRKPRKRQGTSILNSTPNLEEAKEKSKPKLEIPEKRKRAVKRKVLKESESETEKEPFSADEEDDAACMYCTELYTFSRKGDLWLCCCSCQKWAHAESAGLDKKTKRFVCELCTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464731;
- 90% Identity
- iTF_01242258;
- 80% Identity
- -