Pter000948.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987326.1:7984122-7985910[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 1.7e-07 33.8 0.0 1 42 17 58 17 61 0.90
Sequence Information
- Coding Sequence
- atGCCGACAACCTATAAACGTAAGGGAAGCTGCTCCAGAGCTACGTGGAGtgaagaagacttgaatttagcTATTCAAGCTGTGAGAAGTGGAGATTTGGGAGTTAATGCAGCAGCCAGGCAATTTAAGGTGCCTTGTACTACACTGCGGAGAAAAACAAGGACAGGAGGTACCAAAAACAACCGCTTGGGACCACCAGCAGTCCTCGGGGAAGAAAACGAAAGGAAAATCgttgtacatattaaaaaaatgcaacaaaGGGGTTTTGCCCCAACAAGAACTATGGTGCGTATTATGGCTTATCAGCTGGCTGAACAGCTGCGCATTAAGCACACTTTCAACAGGAGAAACGGAAAAGCGGGCTTTGACTGGGTAATATCATTCTTGCGACGCAATCCTGATTTAAGTGTTCGGAAATCAGAGGGTGTTTCTCTAGCTCGGGTTCGCGGTATGAATAAAGAAGATGTTGCAAACTATTTTAACTTACTGGGGACTATTTTAGAGGAAAATGACCTTTTCAACAAGCCTGGACATCTGTATAACCTGGACGAAACCGGTTTACAGTTGAATAACAGACCAGAGCATGTTATAGCGGAAAGAGGCTCCAAAAATGTAGCTGCAGTGACTTCAGGTGAAAGGGGGGAAACTGTTACGGTAATATCCTGCTGTAATGCCGAGGGTGCATTCATACCCCCCACGTGCATTTTTAAGGGTAAAAATATGAAGAAAGAATATGAAGATGGCATGCCTCCTGGGGCCAAAATTTATATGTCAGAAAAATCGGCATACATAAATACAACACTTTTTCTTAAGTGGCTGCAGTCAGAATTTGTTCCTCGTAAGCCTCAAGGTCCAGTGGTTCTTATTTTGGATGGCCATGCCTCCCACTGTTCTTCCGTAGAAGTTTTAGAATATGCCGAAGCGAACGATGTTATACTCCTCTGTCTTCCTAGCCATACCACACAATTTTTGCAGCCCCTTGATCGAGCATTTTTTAAGGCTTTGAAAAGCTACTACTATGCTGCCTCTGAAGCATGGGAAAAAGCTGCCACGGTGAAAAATGCAGTTTCAGCTTTTAGATCCACAGGCATCGCTCCATTTAACCCGAATGCAATTCCAGAATATGCCTTTCTCAACAATGAGCAAGCTCAGAATAACCTGAATCTCAAAATTGCCGACACCGAGAATGATACTGATTCCAACGTGTTGAAAAGCAATACGAAATCCCAATCTGTAGATATGGCAAAGCAAGATACAAATGAGAAAGAAACCCCCGGTAAAATGTTAGACGTCATTTCTCCTATTCCTAGCACGTCTAAAGTCAATGAAGTTCGGAAACGTAGTCGACAGCTTGCCGAGGTCCTAACATCTCCTGAAAATATTTGTAAGCGAAAAGAACTGGCTGCAAAGAAGGCTAGGATTTTAATCAACAAAGAAACAAAGAAGCAGGGTGTACAATCCAAAGCGAAGCAAAATAAACAGCCCAAAAGAGACAGCGATGTTTCCTCCAACAGCGACGCAAGCattattttagaaaacgattCAGACAGTGGTGCCGACGGTGAAAATGATTGCATTGGCTACggagaaaattatgaaaaaacttCAAGCAAAGAAGATTGGTTGCAGTGTCTTAGTTGCCACAGATGGCTGCATGAAGGTTGCACCAGATTTGCAAACCATTGTCTACGGTGTGgaagaaaagaaaatattgcCATGTAA
- Protein Sequence
- MPTTYKRKGSCSRATWSEEDLNLAIQAVRSGDLGVNAAARQFKVPCTTLRRKTRTGGTKNNRLGPPAVLGEENERKIVVHIKKMQQRGFAPTRTMVRIMAYQLAEQLRIKHTFNRRNGKAGFDWVISFLRRNPDLSVRKSEGVSLARVRGMNKEDVANYFNLLGTILEENDLFNKPGHLYNLDETGLQLNNRPEHVIAERGSKNVAAVTSGERGETVTVISCCNAEGAFIPPTCIFKGKNMKKEYEDGMPPGAKIYMSEKSAYINTTLFLKWLQSEFVPRKPQGPVVLILDGHASHCSSVEVLEYAEANDVILLCLPSHTTQFLQPLDRAFFKALKSYYYAASEAWEKAATVKNAVSAFRSTGIAPFNPNAIPEYAFLNNEQAQNNLNLKIADTENDTDSNVLKSNTKSQSVDMAKQDTNEKETPGKMLDVISPIPSTSKVNEVRKRSRQLAEVLTSPENICKRKELAAKKARILINKETKKQGVQSKAKQNKQPKRDSDVSSNSDASIILENDSDSGADGENDCIGYGENYEKTSSKEDWLQCLSCHRWLHEGCTRFANHCLRCGRKENIAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01242115; iTF_01241997; iTF_01242197; iTF_01242198; iTF_01242201; iTF_01242199; iTF_01242304; iTF_01242303; iTF_01242204; iTF_01238593; iTF_01238596; iTF_01242212; iTF_01242246; iTF_00416022; iTF_01240187; iTF_01238591; iTF_01238592;
- 90% Identity
- iTF_01238593;
- 80% Identity
- -