Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: JRKL
Assembly: GCA_963920685.1
Location: OY987331.1:81632174-81644250[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.26 20 8.0 0.1 21 39 29 47 26 53 0.82

2 2 3.9e-10 3e-08 36.3 0.0 1 42 528 569 528 572 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.26	20	8.0	0.1	21	39	29	47	26	53	0.82
2	2	3.9e-10	3e-08	36.3	0.0	1	42	528	569	528	572	0.95

Sequence Information

Coding Sequence: ATGTCTCAATCTAAAAGAAAACATCTAAAATTGCAAGAAAAGGCAGAAATCATAGAATTATTACAACATGGTGTAGCACCTGTACATTTATCCAGGAAATACGGAGTTGCTAAATCGACAATCACTTCAATCAAAAACAAAagacatacaattttgaaaagcATTGGTAGTACGTTCAATGGACCTggaaaaagaaaaacattaaaaatatcagTTTACCCAAAAATGGAAAAGGCTCTTTATAAGTGGTTTCTGACGCAAAGAGAAAAACACGGACCTATTCATGGAGACAGGATTAAAGAAGAGGCAAAGACTTTGCATGCAAAGTTTTACACAGGTTCTTTTCTTGCCAGTAATGGCTGGCTACAAAAATTTAAAGAACGCTATGgtataagaattttaaaaattgctgGGGAGAAACTGTCGTCACAACCAGAACTAATAGCgtcatttaaagaaaaattattagaaaaaataaCAGAACTTCAGCTTAGTTTAGAACAAATCTACAATGCGGGCGAGTCGGGTTTATACTGGAAGCTTCTCCCTGATAAAATTTTTGTCTCGTCATTAGAAAAAACGGCTCCTGGAAGAACGACAGAGAAACAAAGGATAACCTTTTTAGCGTGCACGAATGCTTCTGGAAACCATAAAGTCAACTTGCTGGTGATAGGAAAAGCTAAGAATCCTCGAGCACTCAAAGACTTCAGGTGTCCTGTGACTTATGACCATTCCAAAACAGCATGGATGACATCAGATATTTTTAAGCATTGGTTCAAGAACAAATTTATTCCAGAGGTAAAAGAATTTTTGGAAAATCGAGGACTACCACTAAGAGCCTTATTATTGTTAGACAATGCTCCAAGCCATCCATCAGCGGAAGAACTTAACAATATTGATGAGTGCGTTACAGTCATGTATATGCCGCCAAATGTTTCACCATTAATCCAACCCATGGATCAGAATGCAATACGCCTCACAAAACTACTTTATCGTAAAAATTTGTTATCTGATGTGCTTGGAAAAAATGATGTCGAAGCAGCGTTAAAATCCGTAACTATAAGAGATGCCATTTTAAATCTGAATTTGGCCTGGGAAAAATTAAAACCCACAGTAATTAGAAAATGTTGGCATAACATTTTACCTGAAACAAACGATTCTGATGAGAAAGAAGAAAACATcgcttcaagtattttaaaattacgattaaatgACGAGAATCCGGAGTATGTAGAAGCTGAAATTATGAACACCCTTAAGGTCATGACCACCCGTGTATGGGATCGGCATGATGTTGAGGTTTGGAATGAGGACCGCCAGTCAGAAAATGAGCAAAATGAAGATATTGAAATTGAGGATGAAGATAGTTACGTTGCTGCAAATCCCATAGTAACAGACAAGCTTATTTCCACTGGTGAAGCATTGAAATCTTTAAATACTGTTATTCAGTGGGCTAAAGAAAATTCAAATGAACTGGAATATTCTAGTGTAGTTGCTTTTCAAGACCTAAGAGCTAAATTGATTCAAAAAATaatgccAAGAAAATATGTAAGAAAGCATAATACAGCCAGAGGTCTGTGGACTGAAGAAAATTTAAAGTTGGCTATAGAAAAAGTTAAAAAGGGTGAAATATCCAAAAATGAAGCACAACGACAATATGGAATCCCGGTTCGTACCTTATCTAGACGACTTCAGACTGGCAATGCTATCAAATCTGGATTAGGACCTCAAGCATCACTTGGACTAGAGAATGAAAGACGTTTAGCATCGTATATTAAACGTTTAGCTAGTGCTGGCTTTCCACCTGATAGAAATACTATTCGTTGCCTTGCTTATCAATTTGCTGAGAAGCTTGGTATTCCACACAAATTTTCCAAGGTAAAGGAGAAAGCAGGACAACATTGGCTTACGTCATTTCTCGAAAGAAATGAAGATATCTCCGTACGACAAGCAGAAGGTCTTTTGGTGGCAAGAGCGCAAGATTATTTCTTCGCCATATCTGATCTAGCTGATGTAGTGCCCTCAACAGTACCTTCTGCGAGTGTTACAGtCTCCAACGACAGCCCGTCAACCTCAGCATCAGCAGTTCAATCAGAATTAAACCAAAATAACCCAATGCTTGTCGAAAGTATCAAAGAGGAATACGATGACACTTTTGAGGAATCCTACGACGAAGTCCTGCAAATCACCAAAGAGGAAATTATGGACATAATGAATCAACAGAGTTCAAATTCGGAAGAACTCGGTATTGTCTCCCCCAAAACAGAACCAGGTGTTCACGATCACGTGGCCTCTAATGAACCTCCAAGTAAAAAGTGTCGATCAGAAAATAGTCACGAAAGTGTATCCGCAACTGTCACAGCCGGTCCAAGTTCTACGGCTCTTCTTCAGGAATCCTACCACGAGGCCAACAAACAACTAGTCAATGCAGTGCAGCAAAGTCCTGTTTTGGCAGAAATTCTGGATTCTAGTGGAAATATAGACTTATTTTTTCAATCAATTTTAGCTTTAGCGAAAACGTTGAGTCCTCTTGATCAAATTCTACTTCAAAGGAATATAGCTAATGTCATATTTGAAATGAAAATTGATCAACTAACGAAAAAAACGTCAAGTTGA
Protein Sequence: MSQSKRKHLKLQEKAEIIELLQHGVAPVHLSRKYGVAKSTITSIKNKRHTILKSIGSTFNGPGKRKTLKISVYPKMEKALYKWFLTQREKHGPIHGDRIKEEAKTLHAKFYTGSFLASNGWLQKFKERYGIRILKIAGEKLSSQPELIASFKEKLLEKITELQLSLEQIYNAGESGLYWKLLPDKIFVSSLEKTAPGRTTEKQRITFLACTNASGNHKVNLLVIGKAKNPRALKDFRCPVTYDHSKTAWMTSDIFKHWFKNKFIPEVKEFLENRGLPLRALLLLDNAPSHPSAEELNNIDECVTVMYMPPNVSPLIQPMDQNAIRLTKLLYRKNLLSDVLGKNDVEAALKSVTIRDAILNLNLAWEKLKPTVIRKCWHNILPETNDSDEKEENIASSILKLRLNDENPEYVEAEIMNTLKVMTTRVWDRHDVEVWNEDRQSENEQNEDIEIEDEDSYVAANPIVTDKLISTGEALKSLNTVIQWAKENSNELEYSSVVAFQDLRAKLIQKIMPRKYVRKHNTARGLWTEENLKLAIEKVKKGEISKNEAQRQYGIPVRTLSRRLQTGNAIKSGLGPQASLGLENERRLASYIKRLASAGFPPDRNTIRCLAYQFAEKLGIPHKFSKVKEKAGQHWLTSFLERNEDISVRQAEGLLVARAQDYFFAISDLADVVPSTVPSASVTVSNDSPSTSASAVQSELNQNNPMLVESIKEEYDDTFEESYDEVLQITKEEIMDIMNQQSSNSEELGIVSPKTEPGVHDHVASNEPPSKKCRSENSHESVSATVTAGPSSTALLQESYHEANKQLVNAVQQSPVLAEILDSSGNIDLFFQSILALAKTLSPLDQILLQRNIANVIFEMKIDQLTKKTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -