Pter120408.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- PGBD3
- Assembly
- GCA_963920685.1
- Location
- OY987334.1:21187207-21194787[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-11 6.6e-09 38.4 0.0 5 39 38 72 37 76 0.89 2 2 0.59 46 6.9 0.1 20 37 172 190 171 195 0.86
Sequence Information
- Coding Sequence
- ATGTTAGAACCTCAGGAATTTATGAAAAATCTTGAAAATTTTATAAGTTTGGATTGTATCGTGTATAAACACAAACGGTCCACCACTATGCAGAGTTGGTCTAAAATAAGTATGCAGGAAGCTGTTAAAGCTGTTGTTAAGGGTGAAATGGGCTATCGGCGTGCATCCATTCAATTTAATGTTCCGCAAACAACTCTGGAACGATACGTTAAAAAACAACGAAATAATCCAAATGAGAAAACTCTTTTAACAACTTTGGGTAGATATAACACTGTTTTTACACCGCTGCAAGAACAAGAAATTGCAAGTTACTTGAAAAATATGGAGGAGCGGTTATTCGGACTAACTATGACTGAATGCAGAAAGCTCGCCTTTCAATTAGCGGAGTTAAACAATATTGATCATCCATTTAGTAAGACGGCCCAAATTGCAGGAAAAGGTTGGATGCAGGGCTTCTTGAGAAGATATCCGGAATTATCAATAAGAAAACCAGAAGCTACTTCAGGAATGCGCGCAAGAGCTGCAGACACGTACAAAATATCATTTGGTACTTTATACAACAAATACAATGGCCTTCATATAAGGTCTGTGGGTCGACCAACCCTTTTTTCTAATGAAGAGGAGCTCCAGTTTATAGAATCTGCTGCTATTTGCGGTGAATGGGGCTTTCCTTTGAGTAAAGCGGATATTCAAGCACTTGCAAAATCATGCTTAGATCAGAAGGGTGCAATTATTCCTTGGTTGAAAGAGAACAAACCAGGAATAGACTGGGTCGACCAATTACTCCTACGACACAAATCAGCAGTGGTTAAAAGAGTTGCCGCAAACATCAAAAGGGCCAGAGCAACAGTAAGCGAGACCAGTCTAAAGGAATATTTTAAGAACATTGAAAAAACAATTAAAGGGGTACCACCTGCTAATATTTTCAATTACGACGAGACAAACTTCTCCAATGACCCTGGACGAAGCTTCAAAATTTACCGGCGAGGAGTGAAATATCCGGAGCAGATTTGCAATTATAGCAAGTCAGCAACAACAGTGATGATGTGTGGTTCTGCATCCGGTGTTTTGCTGCCTCCATATATTGTATACAGAGCTGAGAAAATGTGGAACACTTGGACAGAGAATGGTCCCAAAGGCTTTCCTTGCTGCAATCAAAGATGTTGCTCTGCTGGCGCGAGATACAATAGGACACGACATGGATGGATGGAAGCAGTCACATTCCGTCATTGGTTTATGAACAGCTTTCTACCTCATGCGAAAACCTTACAAGGAAAAAAAGTACTCATCGGAGACAATCTAGCTGCACATTTTTCAGACGACGTGTTGAAAGCATACGGGCACTCTTCACATACCAAAAACTTGAACCTAATAAATTATGCAAGAGATAATGGCGTAGTTCTTTTGTGTTTCCCGCCTCACACTACTCACCGCTTACAGCCATTAGACGTAGCATATATGAAGCCTTTAAGTAGTTATTTCGAGGATGAAGTAAGAAAGTGGCTTAGGACCAACCCTGGCCGCCTAGTTACTTTGCACCAACTGTCTGCATTATTTAGCGCTGCTTTCATAAAAGCAGCTACAATGCCTACTGCTATAAACGGCTTTCGAAAAACTGGAATATGGCCTGTGGATGCAGGTGTTTTTTCTGATGCCGATTTTTTACCATCTGCTGCTACTGAAATTGAAGATAAAGATACAACAGATCCAGAAAAATCCAACAATCTTTCAGCTAGTGATTGCCAAGCTGGTACATCCAAAATTAGTGATGCCCTAAAACAAAATCTTAACCATAGTTCTTGCAGTAGGATTCAGGTGCACAGATCAGACAATAATAGGGGGAGTTGGGGCAGATTGATACACTGCTGTTTGAGGCAAAGgaaaggttTTTCGTTAGCAGAAGCTTTAGATATAGCCTATAATGAGGACATTGAAGCGGATATTTTTATTGAGCCGCCAGAACCGAACGTCGAGACAGATGAGGTCTCTGCAGACGAAGACGATGGAGGGTTAGTTGACAACCTAACTTCTCGGCAACTACGCGCTGCTGCCGAAATCAAGTTGCCAAACAATGAGAGAATAGGAGTAGAATATTCAGAAAATGAAGTTTCTGACGCTAACGATTCGAAGGAATCCCAGCCCAATGTTACGTCGGTGCTGTTGGATGAAAACGAAAAATTCTGGCTAAACGAGAGacgcaaacaaaaacaaaattttaaacccaCGTGGGAGTTGAACTCAGATTTTGATAGTGAGCAAGCTTCCTTATTTCCCCAAGCAAAATATTGTCAATATGAGGAGATGTCTCCAGTTCAAATATTTGAGCAGTTTATAGACGAGGAAATCATAGAACACTTAGTGAAAGAGACCCAACGATATGCTTTGTTTTTGAACCGCCCAGATCCTAAAATCTCTAGCGACGAAATTCGTTGTTTTATTGCAATTTTGTTTGTAAGTGGCTATAATAATCTGCCATCTAAAAGAGACTATTGGGACTCGGGAGATGATATGCGCAATGCAGCGGTCTTTCAGGCAATGCGCCGTAACCGTTTTCTCGAAATTTGCCGATTTATTCATTGTGCGGATAATACAAAAATTGACCTCACTGACAAAGCATGGAAAATAAGACCTTTTATGGAAATGCTAAAAGAACGATGCATTAAGAATTTTGTTCCAGAGCAAAATTTATCATATGACGAAAGCATGGTTAAATACTATGGCAGACACAGCTGCAAACAATTTATTCGGGGCAAACCAGTGAGATTCGGCTATAAGGTGTGGAGTATAGATACTAAAGACGGGTATCTTGTAAATTTTGACCTCTATCAGGGAAAAAGTCCAAAAGCAAATACTGAATATGATGTCTTATTTGGTAAAGCAGCGAGCCCAATGGTGATAATGATGGACGAACTTCCACCGGAAAAAAAAAATCTGCGCTATCATTTTTATATGGACAACTTATTTTCGAATCCTGCTCTATTTTCTTACTTGAGATTTCGTGGATACTCCGCTATTGGTACAATACGGGACAACCGCATTCCAACTCAATGCCCCCTAACCAACAAAACTTTATTTGCAAAAAAGGTCCGCGGTACTTTTCAAACTGCTATCGAGAAAACAGATGGTCATTTATACATCAGATGGATGGATAATGCTGTAGTTACAATGATTTCTTCTTCCAGCGGCACTCAAGAGGTAGGACAAGTAAAAAGATTTTCCCAACAGCAAAAACGCAATATAATGATTCCACGTCCATTTGCTATCGCAAAATACAATACATATATGGGGGGGACCGATCAAATGGATCAGAATCTTGCATGCTACCGAATAGGAATCAGGGGCAAGAAATGGTACTGGCCGCTATTTACTTGGCTCTTAGACGTTGCGATGCAAAACAGTtggctattatataataaatcacGACCAGAAAATGTGCCACAAAAAGCCTTTAGAAGGGAAGTGGTCaacgtatatttaaaaaaatatcaagttCTTCCTAAAGGACCAGGAAGATGGGCGTCTACTCTAGGATCCCCCTCTACATGTCGAGTATCCAACGACATCAGATTCGATCGAACGGACCACTTTGTTCAACATACAGAGGGAAAGAAAAAAAGGCGGTGCGCTGCAAGTACATGCAAGTCAATAATAAGAACCATGTGTGGGAAGTGTGACGTTGCACTATGTATAGactgttttaaaacttttcactCACGTTAG
- Protein Sequence
- MLEPQEFMKNLENFISLDCIVYKHKRSTTMQSWSKISMQEAVKAVVKGEMGYRRASIQFNVPQTTLERYVKKQRNNPNEKTLLTTLGRYNTVFTPLQEQEIASYLKNMEERLFGLTMTECRKLAFQLAELNNIDHPFSKTAQIAGKGWMQGFLRRYPELSIRKPEATSGMRARAADTYKISFGTLYNKYNGLHIRSVGRPTLFSNEEELQFIESAAICGEWGFPLSKADIQALAKSCLDQKGAIIPWLKENKPGIDWVDQLLLRHKSAVVKRVAANIKRARATVSETSLKEYFKNIEKTIKGVPPANIFNYDETNFSNDPGRSFKIYRRGVKYPEQICNYSKSATTVMMCGSASGVLLPPYIVYRAEKMWNTWTENGPKGFPCCNQRCCSAGARYNRTRHGWMEAVTFRHWFMNSFLPHAKTLQGKKVLIGDNLAAHFSDDVLKAYGHSSHTKNLNLINYARDNGVVLLCFPPHTTHRLQPLDVAYMKPLSSYFEDEVRKWLRTNPGRLVTLHQLSALFSAAFIKAATMPTAINGFRKTGIWPVDAGVFSDADFLPSAATEIEDKDTTDPEKSNNLSASDCQAGTSKISDALKQNLNHSSCSRIQVHRSDNNRGSWGRLIHCCLRQRKGFSLAEALDIAYNEDIEADIFIEPPEPNVETDEVSADEDDGGLVDNLTSRQLRAAAEIKLPNNERIGVEYSENEVSDANDSKESQPNVTSVLLDENEKFWLNERRKQKQNFKPTWELNSDFDSEQASLFPQAKYCQYEEMSPVQIFEQFIDEEIIEHLVKETQRYALFLNRPDPKISSDEIRCFIAILFVSGYNNLPSKRDYWDSGDDMRNAAVFQAMRRNRFLEICRFIHCADNTKIDLTDKAWKIRPFMEMLKERCIKNFVPEQNLSYDESMVKYYGRHSCKQFIRGKPVRFGYKVWSIDTKDGYLVNFDLYQGKSPKANTEYDVLFGKAASPMVIMMDELPPEKKNLRYHFYMDNLFSNPALFSYLRFRGYSAIGTIRDNRIPTQCPLTNKTLFAKKVRGTFQTAIEKTDGHLYIRWMDNAVVTMISSSSGTQEVGQVKRFSQQQKRNIMIPRPFAIAKYNTYMGGTDQMDQNLACYRIGIRGKKWYWPLFTWLLDVAMQNSWLLYNKSRPENVPQKAFRREVVNVYLKKYQVLPKGPGRWASTLGSPSTCRVSNDIRFDRTDHFVQHTEGKKKRRCAASTCKSIIRTMCGKCDVALCIDCFKTFHSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -