Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: RTase
Assembly: GCA_963920685.1
Location: OY987330.1:113734221-113747984[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.1e-09 2.4e-07 33.4 0.0 1 41 625 665 625 667 0.94

2 2 0.02 1.6 11.5 0.0 7 42 1450 1484 1449 1486 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.1e-09	2.4e-07	33.4	0.0	1	41	625	665	625	667	0.94
2	2	0.02	1.6	11.5	0.0	7	42	1450	1484	1449	1486	0.86

Sequence Information

Coding Sequence: ATGACCCTACGTAATCTTTTAACCTCAATGAATCTTAAGATGCATGTTTGTGGGCCAACGCGCATAACTGGACTCTCTGCAACTACCATAGATTATCTTTGCTCAAATCTAGATGATAGTATTATCGACTGTAGCACTGTCGCTGCTGCTTTATCTGATCATGAAGCTGTAGTGTTGACTTTTTCTGTCGATTTGGGTGTAAGATGTAAAAAGAATAGGCGGGGTCGGATctttagtaaaaataattttatcaggtTTAAAGAAAAGTGTAACGGTGTACGGTGGGAAAGTGTGATGATGTCTGGAGGACAGCTTGAACGTTTTCAGATCATTTTGATTGATTGTTTTAATAGTTCATTCCCATTACaaagtatcaaaattaaaaataagaaaccTTGGCTTACCAAAGGTATTAAGATTTCTTCAAGGAATCTTAGGTCTTTGCACACAATTCGAAAGTTTTACtacaatcaaaaatttttaattgactaTTTTAACAAATACAGACAGACTTATAGAAGACTGATTAAAGCGGCCAAGGATCATTACTATAAAGAAAAACTTGCTGAGGCAAATAACAAAACAAGGAAAAATTGGGAGATAATAAATAAGCTAAGAGGTAAGACTAATAAACTACAGACCAGTGTTGATATTGACCCTAATGTTCTTAACGAATTCTACTGTACAATTGGGGAAAAACTAACTTCGAATCAACAATCACAAAGAGACCCTCTTGTCTATTTGAAAAATATCCATATTGCTGAAGTCTTTAGTATTACAGCGACtgatcaaaatgaaataaaacaaatttttggggaaattaaaaatagaaaCGCTGCTGGATATGATGAGATTTCTTTAAGGGTATTGGAAAGCCTGCCGGTCTCAGCCATACGGGTGCTTGCACACTCAATTAATGAGTCATTTTCAGTTGGGAAGTTCCCGTCATGTCTTAAGAAGTCAATAGTTGTTCCACTTTTCAAGGGGGGCGATTCCGGGGACCCTTCTAACTTTCGTCCTATTTCGCTTTTATCGACGCTTTCAAAAGTGATAGAAAAACTAGTTAAAAGGAGAATGATGGTGTTTCTTGAGAGCCAGAAAATACTTAATCCCGTCCAGTTTGGTTTTCTCCCTGGCAGGAGTACTGACGACGCTGTTTTTTCCTTGATGCATGACGtctatttaaacataaataatggTGAGGTCATTGCGGTAATGTTCTGCGACTTCTcgaaagccttcgattgtgtgGACCACGGAGTATTATTGCGAAAATTGAAACACTATGGCTTTGGAGAGCTGGCCCTCATGTGGTTTACTTCCTATCTCGGTGAAAGAGTTCAGGTGGTGAAAACTGATTTAACTTGCTCCGACGCTTCCGTTGTCACTAGAGGCGTACCTCAGGGATCGGTATTGGGACCCATTTTGTTCTTACTGTACTTAAATGATTTGGCAAGTCTAAATATTCAGGGTagatttacactatttgctgatgacaccagtcTGCTGTGGCATAGTAGGGATGGTGAGGATTTAAAACTGGTTATCAATAGCGATTTGCATAATGTCAAGCTATGGTGTGATGCgaacaaattatgttttaatgtACATAAGACAAATATTATGACCTTTGGGTTTAGCTTCACTACCCTAAATCTCGAATCTAAAACTATTGAAAATAAGTCCATATACAAATTCTTAGGTCTCACTATTGATAATAAACTTAAGTTTGAAGAGCATATAAAGAACATAAGTAGGAAGTTGGCTGCAGGATGTTTTGCGATTAGAGTTGTTTCTCATGAGCTCAGTGCCTCTGCAGCTAAGATGGTGTACTACTCCTTGTTCGAATCATACACGCAAAGATCTTCATGGACACCACAACAGTTACAAACAGCTTTGGATGCAATCGATAATGGTTTATCTGAGAGACAAGCTGCGATAAGATTCAATATTCCCAGAACCACCATCCAGgacagaagaaaaaataaaaatgtttctggACCTACAATGGGAAGAAAACCAGTTTTTACAGCCAAAGCTGAAACAGAACTTGCAGAACAGGTTAAAAAGTTAGCCAGTCCTTTTTTTGGTCTCACATCAAGAGAAGTTAAAAGGTGTGCTTTCACTTATgcacaaagaaataatataaaaacgcCCTTTAGCTCGGAGAAAGAAGAGGCTGGTAATGACTGGGCAGCAGGCTTCATGTCTCGTCATAATATTGTATTGAGAAAACCTGAGGCTACAAGTCTCAACAGAATTACTGCCTTCAATCGAGAGGAGGTGACTATATTCTGGGAAAATCTCAGGCGCCTTATgaaaaattatcaatttaaccCCCAACGTATTTTTAACTGCGATGAGTCTGGGTTTTCAACGGTGCAACGCCCAAATAAGGTATTTGCAAGTAAAGGACAAAAGAGACTTGGGTTTGTGACAAGTTGGGAAAAGGGAAAAACAACGACGGTAATGTGTTGTTTCAGTGCATCAGGGATTTATGTACCAGTTATGTTCATTTTTGCCCGGAAAAGAATGTCGCCACAATTAAAACGGAATGGACCACCAGGAGCAATATATGAATGTTCGGATAATGGGTGGATCACCGAGGAACTATTTCTAGTCTGGTTGAGACATTTCCAGAGTTTTGTGAAAGCGTCTAAAGAAGACCCAGCGCTTTTGGTTCTCGACAACCATGTCACCCATTGTACCCTTCAAGTTTACAATTTCTGTAGAAACAATGGCATTACCGTCCTAACTATTCCACCGCACACCTCCCATCGTCTCCAGCCGCTAGACGTATCatttttttattcattaaaaGCCGCTTATAATAGTGAGTGTGGCAAATTCCTAACCAGTCATGCAGGCGAAAGAATAAGTCCAAACGAAATAGCCGAATTATTCAACAAAGCTTTCGGCAGAGTAGCTACACCTGAAAAAGCGATTAAAGGTTTCACAGAAACCGGTATATTTCCTTTAAATACCGACGTTTTTACCGAGGAAGACTTCGCTCCAGCCGAAAACCTACAAAGACCGCATTGCAGCACCACCGACGAGAATAAAATGCAAGAAGAAGTTAGAAAGAACGAGAAGACGCCAGAAAAGGCTACCAGCTCAGACGAACTGAAAAATGTTTCTTTCACAGATATAATTCCGATACCCTCTTGTTCTAACACAAACAACAGACCAAAAAGAAAGTCTACAAAGCAGCATTCTATCATATTCACTTCCACGCCattaaaagatattttagaaGAAAAAGATAAAAACAGAAACTCTAAAAAGCAGAAGGCCGAGCAGAAGGCAGTTGAGAAAGCCAAAAAAAAAGTGGTTGAGTCACAAGATTTGAAAATTGAAATGAGAGAGAAATCTAAGTGTCCAAAGGCATCAGTTGACTATCAGAAAATGCTGGAAGATGAACCATTTGAAGGAGATGACATGGATAAGGAAATAACTAAAGATATTTGTATTATATGTGGAGAATTTGGTAAAAACGCCGAAATATGGTTAAGGGTCTGTAAAGAACACAACATTGACTTTGTCTTCCTACCCGCAAACTCTACGCACATCACGCAACCTTTAGATGTTGCTTTTTTTCGCCCTCTTAAAACGGCGTGGCGTAAAATAGTTATGGAGTGGAAAATGGGACCAGGGCAAACTACTGCAACCATACCAAAAAATATGTTTCCGAGACTGTTAACGAAGCTTATTAACGTAATTGACACTAGCAGGGTGTCAAATCTAACATCTGGGTTTGTGAAATGCGGAATCGTTCCTTTGAATCGCCAGAAGGTTCTGGATATGTTGCCTCCAGATATAGAAACTGACAACAACACTGCCACATCAGATGCTATGGACAATTCTCTTGTAACCTTTCACAAAACAATGCGTTATGGTGACACAAATACCAAAAAACCTccagaaagaaaaaagaaaattcaagTCGCACCAGGAAAAAGTGTTACTGCTACCTTCTCAGAGCCCGAAAACACATCATCTAATGAAGATGAACCTGATTTACCACTACTACCACTACCTCGAAGGGAGGACTCGACAGATGATGATAGTTCTAGTGAAGATGTTTCGTTGTCAATCTTAAAGGCCAAGATCGATCATGTCAAAAAAGTGGACATAAGCCAACTTAAAATAGGTGATTGGATTCTCGTGGGGTTCTCTCCCTTAACCAGTAAGGCTGGTTCATCTAAAACACGGGACTATATTTGTAAAATAGTCACCAACATCAATAAGGAAGAATTCGAAGGTTCCTTTCTGCGATCCAAGTTAACGAGGGACGATAGGGGATTTATTTATGGATATCCTGATGTTCCagacatacagtgtgtccacGCTGCTATGCAAGCAGTCAAAGATGGACATGGGAAAAGGAAGAGTGCTAGAGATTTCGGCATTCCCTATTTAACTTTAAAAGATCGCCTTAAGACAAATAATTCTTCTGTAGGTCAACTTGGCCGTCACTCTACATTTTCACCTGAGCAAGAAACAGAATTAGAAGAGCGATGCATTTATCTAGCAAAAATGTTTTATGGTCTTACAGCTATGGATTTACGAAGACTTGTGTATGATTTTGCCCAAAAGAATAACATTCCACACTGTTTTAACCAGGAAAAGAAAATGGCAGATAAATGTAATAAAAGAACAGAAAAAAATCCCAAAGAAGACGCTAAAATTTGCCAAGTAACATTGAGTGCTTTGGAAGACAGCTCCCCTCGGAGCTCAAGTGTCTCCTCCAACGAGAGTATCGAGCTTTCATTTCCCAAAAGTAACGATATTATAACACAACCTTCCACTTCTCAGATGAGAACAAAGCTTCCTTCTTTAGCACAGGCTTGCGACCGACTCGGCCGGATCCCCCCAAACGTAGGAAACCAAGAAGAACAGACAAGTAGAGAAAATGTAGAAGACCCAAAGGAAAGACAGGTATTTACACTAACCGTGAAAGGAATAGAAGGAGGGACACGAAAAAAAGAGAAAGAACTCGGCGTAAGACAGTTCCTTAAAAAACTGGCAGCACCTACACCAAGATCAAGATCTTTAAGCTCTATAGAGAGAGCAAAATCAGTGGATATGGATACGGACCCAGacacaaaaaaaaggaaaatgccAGATTCATCGATAGTGATCTCAGACGAGGAGGAAACCCACAAGGGAAAAGAAAGCGAAGAATATGTAAGACTAAAAGAGATACTGAATAATATAACCAGAGCGGCACAAAATCTAGAAAGAAATTTCGAATATAATACAAAGAAAGAAATAAGAGATATGGCAGCGAAAATTAGGAGAAATATTGAAGCTGCAAATAACACCAAAATCTCGACATGGCTTGACAACCACAGATACGAGGGTTCAGAAACTATAGGAGAAGAAAAAATTACACAAgaacaaagaaaatataaaacCTCTCAAATAAATACAAACACCCAGACAGAAGAGAGCACAGATACAAGCAGAGAAGAAAGGCTAACAaagaaaaaagtaatatacaaagACGCGGAAACCCAAACGGAGGACTCCACAAAACCAACAGAAGAACTAGTAAAAACGATAGAGGGAAAAAGGACACTTGAAGAATATAAAATTCTGGCAAACCAAACTTGGGCTGAAGAAGTCTACAAAAAAACCGAAATTAAAATAGAAAATCCCCTGAATACAAACTCAGATGTGGTGAAAATAGTGCTGGTAGAGCCGTTTGATAGAAACATGGAAGAAAGCATTCAGGGGCTATACAAAAGAAGATTCCCGGAGATTGCAGAAATCGCCGAAGAATATGGTGTAATGGAGCAGACCACGAAAATCAGAGGTAATAATGCAAAAGGACAAAAGATCATCAAGATATGCCTAGACGCAAGTGATGAAACATTATGGGAACACCTCCAGGAACTAAAACAAGACACTAGAGAAGATGAGTGGGTAGCGCTACATCATGTCAAGAGATTAGAAATAGAAAAGTTCCGGAAAATGGTAGAGATGATTTTCCAGGACACAGAGACAAAGGCGCTTATATTAACTACAAGAACAAATGCGGAAAAAAAAGGGGAAACAATAACAGTACAACCTAAGACTCCAAGAAGCGAAACAAGAACGTACGCAGCCATAGTGGACCAAAAGGGAAAGGATTTCAAACAACTACTGAAAGATGTAAAAAACAAGGTAATGGGCACGGAGGATAGGCAAATAATAAAGGGCATAAGAGAATCCATAGACGGGAGATTAATTATTACAACAGATAAAGACGAAGAAGCTTTAAAAAGACTCGGACAGAAGATCAAGGAGAGTTGTCAGGAGGCAGAAGTAAAAATAAAGGGAAATGCAGAGAGCTCGCCAAGAGTGGCAATCTTTATAAGCGGCCTAGATGCAATTACTACTAAGGAGGAAATAGCAGAGGATATAAGAGGTCAAATAGGCGAAGAAGGAGACGATGACATCCGACTGAGCGAAACAAGACCTAGTATAAATAATACTCAGAAAATTACAGTATGGATCCCGAGTAAGAAGGCTGACAAGCTAATGAAAACAAACACAGAGTTAAGAATAGGACTAGTGAGATGTAAACTAGAGAGAAAAGTTAAAATGGAAAGATGTTTCAAATGCTGGGCTTACGACCACCAAGCAAGTAACTGCAAAGGCACCGACAGGAGCGACCTTTGCTTCAACTGTGGCAAACAGGGACACAAAAGCAAGGAATGTAAGGAAGAAAAAGCATGCCCGATCTGTAATAAGGCCGGACATAAGGCTGGAACCGGCAAATGTAAATACCACTTACTTGCACTGACAAAAGCCAAAACTTATAGAAttCTCCAACTAAACCTTAACAGGTGTTGGGCAGCGCACGACCTGTTAAGTAAAACGATAGAGGAGGAAAATATAGACATAATTATAGGGCAAGAAGCAAATAGAAACGCTAAAAATGTAGATTTCTGGGACTTGGAAAAAGACAGCtttataaatataaacaaaaatatacccGTAGTTCGTAGCAATAAAGGCAAAGGATACGTGTGGGTAGAGTTAGAAAAGTACCTGATAATATCGTGCTATTTTTCACCAAATGGGCAAGATGAAGACTTTGAAATACTATTGAATTGTCTAAAGACGGTACTGAAAAGAAGtaaaaagataaataaaatacttgGCGGGGACTTAAATGCAAAAACTCCAATTTTTGGATCAGCAGTTAGTAACAACAGAGGGATAATGTTAGAAGACTGGATAGCGGAAACAGGAATGGTGATAATAAACGAAGGAAATATACCCACATACGCAGGGCCACGCGGAAACTCCATAATAGACATCACCGTGGCAAGCGCGAGAGCCAGTAAAAACATACAAAACTGGAGAGTGGAGGATGAGAAAGAAAATTATAGTGATCACCAATCAATAATGTtcgaaataataaatattaaaataccggataaaatagaagaaaatataaataaaagatggAAAATGAGCAGCACGACACAAAAAAACTTCGCAAAACAGTCTCACAAAGTATTTAGTAAAGAAAATATCTTAAACCCACAAGAATTCATACAAGAGATCATAAACGCATGcgacaaacattttaaaaaagcaAACCCCAAGCACAGTAAGCCTCCAGTATACTGGTGGAACGACAAAATTgcacaaaaaagaaaaatatgcaGCAAACTAAGAAGGAAAAGGACACGAGCAAGAGGAAATAGAACGGAGGCGGGTGAAATGCACATCATAAACGAAAGTTATAAGGCGGCGAAACAGGACCTGAATAAAGAAATCAGAGCTAGCAAAAAAAACAAATAG
Protein Sequence: MTLRNLLTSMNLKMHVCGPTRITGLSATTIDYLCSNLDDSIIDCSTVAAALSDHEAVVLTFSVDLGVRCKKNRRGRIFSKNNFIRFKEKCNGVRWESVMMSGGQLERFQIILIDCFNSSFPLQSIKIKNKKPWLTKGIKISSRNLRSLHTIRKFYYNQKFLIDYFNKYRQTYRRLIKAAKDHYYKEKLAEANNKTRKNWEIINKLRGKTNKLQTSVDIDPNVLNEFYCTIGEKLTSNQQSQRDPLVYLKNIHIAEVFSITATDQNEIKQIFGEIKNRNAAGYDEISLRVLESLPVSAIRVLAHSINESFSVGKFPSCLKKSIVVPLFKGGDSGDPSNFRPISLLSTLSKVIEKLVKRRMMVFLESQKILNPVQFGFLPGRSTDDAVFSLMHDVYLNINNGEVIAVMFCDFSKAFDCVDHGVLLRKLKHYGFGELALMWFTSYLGERVQVVKTDLTCSDASVVTRGVPQGSVLGPILFLLYLNDLASLNIQGRFTLFADDTSLLWHSRDGEDLKLVINSDLHNVKLWCDANKLCFNVHKTNIMTFGFSFTTLNLESKTIENKSIYKFLGLTIDNKLKFEEHIKNISRKLAAGCFAIRVVSHELSASAAKMVYYSLFESYTQRSSWTPQQLQTALDAIDNGLSERQAAIRFNIPRTTIQDRRKNKNVSGPTMGRKPVFTAKAETELAEQVKKLASPFFGLTSREVKRCAFTYAQRNNIKTPFSSEKEEAGNDWAAGFMSRHNIVLRKPEATSLNRITAFNREEVTIFWENLRRLMKNYQFNPQRIFNCDESGFSTVQRPNKVFASKGQKRLGFVTSWEKGKTTTVMCCFSASGIYVPVMFIFARKRMSPQLKRNGPPGAIYECSDNGWITEELFLVWLRHFQSFVKASKEDPALLVLDNHVTHCTLQVYNFCRNNGITVLTIPPHTSHRLQPLDVSFFYSLKAAYNSECGKFLTSHAGERISPNEIAELFNKAFGRVATPEKAIKGFTETGIFPLNTDVFTEEDFAPAENLQRPHCSTTDENKMQEEVRKNEKTPEKATSSDELKNVSFTDIIPIPSCSNTNNRPKRKSTKQHSIIFTSTPLKDILEEKDKNRNSKKQKAEQKAVEKAKKKVVESQDLKIEMREKSKCPKASVDYQKMLEDEPFEGDDMDKEITKDICIICGEFGKNAEIWLRVCKEHNIDFVFLPANSTHITQPLDVAFFRPLKTAWRKIVMEWKMGPGQTTATIPKNMFPRLLTKLINVIDTSRVSNLTSGFVKCGIVPLNRQKVLDMLPPDIETDNNTATSDAMDNSLVTFHKTMRYGDTNTKKPPERKKKIQVAPGKSVTATFSEPENTSSNEDEPDLPLLPLPRREDSTDDDSSSEDVSLSILKAKIDHVKKVDISQLKIGDWILVGFSPLTSKAGSSKTRDYICKIVTNINKEEFEGSFLRSKLTRDDRGFIYGYPDVPDIQCVHAAMQAVKDGHGKRKSARDFGIPYLTLKDRLKTNNSSVGQLGRHSTFSPEQETELEERCIYLAKMFYGLTAMDLRRLVYDFAQKNNIPHCFNQEKKMADKCNKRTEKNPKEDAKICQVTLSALEDSSPRSSSVSSNESIELSFPKSNDIITQPSTSQMRTKLPSLAQACDRLGRIPPNVGNQEEQTSRENVEDPKERQVFTLTVKGIEGGTRKKEKELGVRQFLKKLAAPTPRSRSLSSIERAKSVDMDTDPDTKKRKMPDSSIVISDEEETHKGKESEEYVRLKEILNNITRAAQNLERNFEYNTKKEIRDMAAKIRRNIEAANNTKISTWLDNHRYEGSETIGEEKITQEQRKYKTSQINTNTQTEESTDTSREERLTKKKVIYKDAETQTEDSTKPTEELVKTIEGKRTLEEYKILANQTWAEEVYKKTEIKIENPLNTNSDVVKIVLVEPFDRNMEESIQGLYKRRFPEIAEIAEEYGVMEQTTKIRGNNAKGQKIIKICLDASDETLWEHLQELKQDTREDEWVALHHVKRLEIEKFRKMVEMIFQDTETKALILTTRTNAEKKGETITVQPKTPRSETRTYAAIVDQKGKDFKQLLKDVKNKVMGTEDRQIIKGIRESIDGRLIITTDKDEEALKRLGQKIKESCQEAEVKIKGNAESSPRVAIFISGLDAITTKEEIAEDIRGQIGEEGDDDIRLSETRPSINNTQKITVWIPSKKADKLMKTNTELRIGLVRCKLERKVKMERCFKCWAYDHQASNCKGTDRSDLCFNCGKQGHKSKECKEEKACPICNKAGHKAGTGKCKYHLLALTKAKTYRILQLNLNRCWAAHDLLSKTIEEENIDIIIGQEANRNAKNVDFWDLEKDSFININKNIPVVRSNKGKGYVWVELEKYLIISCYFSPNGQDEDFEILLNCLKTVLKRSKKINKILGGDLNAKTPIFGSAVSNNRGIMLEDWIAETGMVIINEGNIPTYAGPRGNSIIDITVASARASKNIQNWRVEDEKENYSDHQSIMFEIINIKIPDKIEENINKRWKMSSTTQKNFAKQSHKVFSKENILNPQEFIQEIINACDKHFKKANPKHSKPPVYWWNDKIAQKRKICSKLRRKRTRARGNRTEAGEMHIINESYKAAKQDLNKEIRASKKNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -