Ppte072466.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018384.1:38351757-38365585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.072 13 8.5 4.8 1 23 104 126 104 126 0.95 2 11 0.0014 0.26 13.9 1.6 1 23 132 154 132 154 0.97 3 11 1 1.9e+02 4.9 5.5 1 23 160 182 160 182 0.95 4 11 7.7 1.4e+03 2.2 0.2 1 9 348 356 348 359 0.83 5 11 0.077 14 8.5 5.4 2 23 378 400 377 400 0.91 6 11 0.00019 0.035 16.7 0.8 1 23 405 428 405 428 0.98 7 11 0.13 23 7.8 5.9 1 23 503 525 503 525 0.95 8 11 0.0012 0.23 14.1 1.8 1 23 533 555 533 555 0.96 9 11 0.00074 0.14 14.8 0.6 2 23 664 685 663 685 0.95 10 11 0.13 24 7.7 0.0 1 23 693 715 693 715 0.96 11 11 0.14 26 7.6 0.8 1 23 722 744 722 744 0.96
Sequence Information
- Coding Sequence
- atgaaaatgttatttaaagGACACAGTACACGATTGGAGATGCTTATTGAAAAAATTCACTCGAATAAGGAAAATTCTTATCAAGattctGAAGTTTCCGGAAGTACTTCCTCAGAAATAAGAATAACGAGTTCAGAAAATTTGCCAGAAATAAATTCAGACTCTCCAAAATCTCTAAGTTTTTCGGATACAGAAGAGGAAAAGGATTGGGacgaaacgaaaaatattgataatactGAGGGTTCAAAAGCAAGCTTTGATACTGACAACGGAAGCGATGACAAGattTCAGAATCAAAACCGCTTCAGTATTTATGCACATTTTGTCCAAGGCAGTTTAAACATAAGAGATCGAGAGACCGGCATATAAAATTACATACTGGTGACAAAAAATACAAATGTATCCAATGTGAGTCAGCTTTTGCCAGGAGCGATCATTTGAAAATTCACCTTAAGACTCATGACATGAAGAAGCATTATACATGTACTAGATGCCATAAAGGTTACAACACAGTTAGCGcattatgttttcacgaaaaAAGTCACAGTAAAGATAGTAGGAATATGGAAAATTCATCTATTTCCAGTCCAGAGAACTCTCTGAAAAATTCTCAATATCcaaagcATTCTATAATGTGGAGTCAGGACTCTGAAGAAAAAGCAGATATAAAGACAATTTGTGTATATTGTTTTCAATGGTTTTCCAGCATTGAAATTATGATCGAACATGTTCAAATGTATCATAGAAGTTTCGGAAATGAAATCGATGATCAAAAAAAATACCACCTGGAACTTGATATAAGCAAAAAATCGAAAACAATAAACTTCGAATGCGAGTACCATGAACACAAAGAAGAGCCGAATGCTTTAAAAAGGCCGAAAGAAGAGCCTTGTTCAGACCCAATTTCTTTTAAACGAAACCATTACGAAGATCCCGTACATTCACAAGATACTTTTATTTGTGCCTGCTGCTACGAACgattaccaaattttaaaagctttttagTTCACATGGAAACACACGTATCTACCGTAAAAACCCATACCTGTCATCAATGTGGTGAAGAACTAAATGACATCTTGTCGAACCATGCCTCTAACGCATCGATGGTACCACTAAGCAACTATCTATGTTGCTGTCATTGTGACAGCTCGTTTGAAGATTCAGATACACTACAAACACACTTGTTAGACCAGCATGTTATTACGTCATACAAGTGTTCGATGTGTGATCAAAGTTTTGAAGAAATGTCGTCTATGAAGGTACATTTAAATACTcaacatattattaaaagagAACATTTTGAATGCAGCTGTTCTGAAAATCCGAAGCTATTTCATGACAGGATGTCAGCCGAGCTACATTTTTCCAAATACcattcaactttaaaaaattcgtCTAAACATAAATGTAAAATGAGTGAACAAAAGGGTGGTTTGACAGTGAAGGAAGAATTTACAGAAAATGGGTCTAAGAATGCTTCTTACTCTTTTGGAACCGTTGGTCATCGATGTATCTACTGCAAAGAATATTGCAAAACAAAAACCGATCTCCAAATTCATCTACGTTCTCATCAAATATCGGATAAATCAAGACACAAATGTAACATTTGCGACGATACCTTTACGTCGTCTACAGAACTGGCCACTCATAAGCTGAACCACTGCAAAATAGTTGAAGGGAACATTTGTGTTCAATGTAAAACCATATTATTGGACGAGGAGGCATTTGTGAAACACCAACTAATGCACAACGACAGTTCGAAGTCAACGACAAAACTGAATTTAATTTTACCTTCGATCTGCATCGTTTGCGGCCAAACACTGCAAAGCGATCGCGAAATTGAGCTTCATGCTCAGTTTCATCTGAAATTTTTATCCGATCAAGTCAAAACTCGAGTTTCTGAGTCTCCTTACGCCGAAGATGCCGTATTTCATAGCGATAAAACTACAAATTTCGGAATGGGTACGGATGTATCCTTGGAATTACAGTGTTATTTGTGCAAAAAATCATTTACAGCAAAGGAAAAACTTCAAGTCCATCTAATCGAACACAATTTTTTTGGGATTAATCAATTTAGTTGTTACATTTGCTCTTCAGTGTTTACAGGGGCTGTTGGGTTGCAAGGACATCTTTTAGAGCACAATTTAACAGAAAAACCTTATCAATGCTCGCAGTGTTCAGCCGGATTCTTTTTTCGTGCCGAATTGGATAATCATAGGTATTtgcataattttaaattacagtTCGATTATTTAAGTGATGAGTCTATCAATCAAGCACGCCATTTTACGAATACTTGGCTTAACAGCGAAATATCTACCGATTATGCACCACCCTACGTCACAGATCGGCCTGCACCAGCAAATAATGTGGGCAATAAAGCTAATATTACCACGCCAGAACCAAGAAATGGAGGAAATGGACCTACACCAGATGAAGAGGTTAATCAACAAAATGAAGAACCTACACCAACGACATCTTCTCCTGCATTAGATGAAACCAACAATGATCTGAATGAACCCGTAGCATCAACTTCGCGTCTTACCCCAGTTGAGGAGTTTTCACCAGAGGCAGTTAGACCTTTTCCCCAAGCTCCGCCTAGAAGAGAAGGAATTAaaggaaaaaagaaaagaaaatcggCCATATACACGGATACCCCTTAG
- Protein Sequence
- MKMLFKGHSTRLEMLIEKIHSNKENSYQDSEVSGSTSSEIRITSSENLPEINSDSPKSLSFSDTEEEKDWDETKNIDNTEGSKASFDTDNGSDDKISESKPLQYLCTFCPRQFKHKRSRDRHIKLHTGDKKYKCIQCESAFARSDHLKIHLKTHDMKKHYTCTRCHKGYNTVSALCFHEKSHSKDSRNMENSSISSPENSLKNSQYPKHSIMWSQDSEEKADIKTICVYCFQWFSSIEIMIEHVQMYHRSFGNEIDDQKKYHLELDISKKSKTINFECEYHEHKEEPNALKRPKEEPCSDPISFKRNHYEDPVHSQDTFICACCYERLPNFKSFLVHMETHVSTVKTHTCHQCGEELNDILSNHASNASMVPLSNYLCCCHCDSSFEDSDTLQTHLLDQHVITSYKCSMCDQSFEEMSSMKVHLNTQHIIKREHFECSCSENPKLFHDRMSAELHFSKYHSTLKNSSKHKCKMSEQKGGLTVKEEFTENGSKNASYSFGTVGHRCIYCKEYCKTKTDLQIHLRSHQISDKSRHKCNICDDTFTSSTELATHKLNHCKIVEGNICVQCKTILLDEEAFVKHQLMHNDSSKSTTKLNLILPSICIVCGQTLQSDREIELHAQFHLKFLSDQVKTRVSESPYAEDAVFHSDKTTNFGMGTDVSLELQCYLCKKSFTAKEKLQVHLIEHNFFGINQFSCYICSSVFTGAVGLQGHLLEHNLTEKPYQCSQCSAGFFFRAELDNHRYLHNFKLQFDYLSDESINQARHFTNTWLNSEISTDYAPPYVTDRPAPANNVGNKANITTPEPRNGGNGPTPDEEVNQQNEEPTPTTSSPALDETNNDLNEPVASTSRLTPVEEFSPEAVRPFPQAPPRREGIKGKKKRKSAIYTDTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01239578; iTF_00196764;
- 90% Identity
- iTF_01239578;
- 80% Identity
- -