Ppte011115.2
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018375.1:142218704-142236980[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.25 47 6.8 5.3 1 23 19 41 19 41 0.98 2 19 1.4 2.6e+02 4.5 0.3 6 23 88 105 88 105 0.95 3 19 0.029 5.4 9.8 2.8 1 23 221 243 221 243 0.97 4 19 0.0036 0.67 12.6 1.3 1 23 266 288 266 288 0.98 5 19 0.013 2.4 10.9 3.1 1 23 302 324 302 324 0.98 6 19 3.2 5.9e+02 3.4 0.4 2 23 379 401 378 401 0.93 7 19 1.2 2.3e+02 4.7 3.3 1 23 418 441 418 441 0.95 8 19 0.0041 0.76 12.5 4.0 1 23 474 497 474 497 0.98 9 19 4 7.5e+02 3.0 8.6 1 23 517 541 517 541 0.98 10 19 0.27 50 6.8 2.0 1 23 552 575 552 575 0.95 11 19 0.18 34 7.3 6.7 1 23 583 605 583 605 0.97 12 19 0.00025 0.046 16.3 0.9 1 23 608 630 608 630 0.99 13 19 0.057 11 8.9 1.6 1 23 639 661 639 661 0.95 14 19 0.86 1.6e+02 5.1 4.9 1 19 665 683 665 687 0.92 15 19 0.00083 0.16 14.6 1.9 1 23 696 718 696 718 0.98 16 19 0.0026 0.49 13.1 0.8 1 23 727 749 727 749 0.98 17 19 0.034 6.4 9.6 2.6 2 23 759 780 758 780 0.97 18 19 0.00055 0.1 15.2 2.7 2 23 791 812 790 812 0.97 19 19 0.0026 0.49 13.1 3.2 1 23 820 842 820 842 0.98
Sequence Information
- Coding Sequence
- ATGTCCAGTAATGAAAATCCTACAGGCGACAATCGCCAAGTGCCTGTAGAAACATACAAGTGCTCTCAGTGCAACTTTTATACCAATCATGAATACTATTTACAACAACACAATTTAACTCATAGTTTACAAGTGCTAATGGAGCATTATAAACGTAACCAGACTAATTATGACCCAAATGTCCAGCCGCAGGCCTACATTAAACCTAATAGTTTGCCTCATACAGTGCAGGTACCGCAAAAAACCTTACAATGTATTCCATGTAATTTTGAAACAAATCAAGAATCATATTATAAGCAGCATATACTAACACACAATATTCAACTTCCTGTAGACCCCTATAGGATGATTGTACAGTCTAATTTTGAAGGTAGTGAAGAAAGTTATCTGAAACACCATAATGTTGGTCAAAACATTCCTTCTATGGAAGCATTTAATTCTCGTGGCTTTGAACCTGATAGGGAACTTAATGTGAAGCCTCGTGATCTTACCCACACTACTAATAGTTTTGAAACTGTTTTAATCAAGCCATCCATCGATACAAATGCCTTAGAAACTTTGCGATGTCCAGTTAATAATTGTGAATTTCAAACACAGGATGAAAATGACTGGAGACAGCACAGTCTTAGTCATGATTTGCAAACTCCATGTCCTGAAGTGTTTAGCTGCACTAAGTGTGATTTTGAGACCCACCAAGAACAGGATCTAAAGCAGCATATTAAAGAACATCAAATAAATGAGATTGATACAGAAAATGTGAAAAAGGAAGATAGTGGTCAGCCACATAAAACAGTTTTTAGGTGTGATAATTGTGACTATGAGACGAATCTcaaggcatttttaaaaagacacATGTTACAACATACCGTAAAAGTTGAAGTAAAAGTTGAAATAGAAGAGAAATTTAAATGTTCCCAGTGTGGTTTTGAGACagaacatgaaaaatatttgaaaagacATGAACTAAGCCataaggaaaataaatattttaagtgtaaaagttgccaatttgaAACTTTGTACAAGAAAATGTTTCTAAAGCATCAACAAGCTCATAAATCTAAACAAAAAAGCAAAggcaaagaaaataatatacaagatatccccacagaaaaaagtagaatatatgatatacagtgtgatgAATGTTCATTTGATACATACTCGTATGACCTACTGGACATTCACAAAAAACTTAAACATCCCGTGTCTGTCCCTAAACCTATTCAGGACGATTATGACATTAATCTACATAAGTGTCCATATTGCAAGTACCAAACTAATTGGGAACCATGCTTAAAAAGACATATAGAAAGGGTGCATCCTAATGGAAAAcccataaaaattaaaaaagaaaaacctgaaaagaaaaaagttgaaaaaattgtagAGattaaaaaagaaaaagaccAAGATGAATTTAGATGCGACAACTGCGACTTTTCAAGTAAAAGCAAGCATTACCTTATTCTTCATTTGAAACGTTCCCATTTAAGACATGAGAAACCACCAGTTGTGAAAATAGAAAAATCAAGTACTAGTAAACTTTACGAATGCAAATTTCGGAACTGCAAATTTCAAACGTCTATTAAGAGCAATTATTGCCACCATTTAAGAAAACATCAGGGTCAGAATCCGCAAAGGATAATGTTCCATTTTTGCGATTTGTGTGATTTCATTACAAAAACTGAAGAAACACTGTCGGATCATAAAAAACGAATACATCTAAGTCATTTAAGGCAAATGTACAAATGTGGTCAGTGTAACTTCAAGACGGTACACAAGCACAGTCTAAAAACCCATTCGATCAAACATAAAACGTACACGTGCAATCATTGCGGACTAGAGCTAGAATCAGCCTTTGCCTTAGTTAAACATAGAAGGACTCATCAGGTGCATCCGAAAAATAGAATATTTCTGTGTGATGTTTGTGGGTTTCAAAGCAAGAATGATAGGTCACTCAAAATGCATAAGAAAACCCATAATCCGGAGTTTAAGTGTCCAGATTGTCCATTCCAGACCCATAGCAAGGTTAACTTCCAGAATCACTGTATAAATCACAAGGGAGCCGACGAAGTCACAATGTTTCCCTGCCCGCACTGTTCGTACCAATCAAGATTAAAACGTAACCTGGCTTGGCACATGAAAAGACATGCCgacccaacaaaaattaaaatgtttaagtGTCCCTCTTGCGAATATCAGACGTTTACAAACGCACAATTAAAATCACACTTGATGGTACATAAGACTAAAGAGGAAGTTATAATGTTGAAATGTGATTTTTGTACGTTTGAAACGAAGAGAAAGTCGAATATGGTGCAGCATCGATTGAGACATCTAAAAGACTCGCCCGACGTACCCTTGCTGTCTTGTCCCGATTGTAACTACACCACCGTCGCTAAGCGGCATTTAAATAAGCATAGGAAGACGCACAACGTGAATCCAGACAAAATGTTCCAATGTACTTATTGCCCGTATAAGATTCACCGGAAGGTATACTTGATGCGGCATATGGAGAACCATAAGCAGGTAGAGACTTACGGAAATGATCAGTGGCAAAGGTATACCTTTCCGCCGCAACCTCAAATGCATATTACAGGTATTACGGTGGTGCCTAATTTAGGACAGAATTTACCACAACATCCGTTAATGTGA
- Protein Sequence
- MSSNENPTGDNRQVPVETYKCSQCNFYTNHEYYLQQHNLTHSLQVLMEHYKRNQTNYDPNVQPQAYIKPNSLPHTVQVPQKTLQCIPCNFETNQESYYKQHILTHNIQLPVDPYRMIVQSNFEGSEESYLKHHNVGQNIPSMEAFNSRGFEPDRELNVKPRDLTHTTNSFETVLIKPSIDTNALETLRCPVNNCEFQTQDENDWRQHSLSHDLQTPCPEVFSCTKCDFETHQEQDLKQHIKEHQINEIDTENVKKEDSGQPHKTVFRCDNCDYETNLKAFLKRHMLQHTVKVEVKVEIEEKFKCSQCGFETEHEKYLKRHELSHKENKYFKCKSCQFETLYKKMFLKHQQAHKSKQKSKGKENNIQDIPTEKSRIYDIQCDECSFDTYSYDLLDIHKKLKHPVSVPKPIQDDYDINLHKCPYCKYQTNWEPCLKRHIERVHPNGKPIKIKKEKPEKKKVEKIVEIKKEKDQDEFRCDNCDFSSKSKHYLILHLKRSHLRHEKPPVVKIEKSSTSKLYECKFRNCKFQTSIKSNYCHHLRKHQGQNPQRIMFHFCDLCDFITKTEETLSDHKKRIHLSHLRQMYKCGQCNFKTVHKHSLKTHSIKHKTYTCNHCGLELESAFALVKHRRTHQVHPKNRIFLCDVCGFQSKNDRSLKMHKKTHNPEFKCPDCPFQTHSKVNFQNHCINHKGADEVTMFPCPHCSYQSRLKRNLAWHMKRHADPTKIKMFKCPSCEYQTFTNAQLKSHLMVHKTKEEVIMLKCDFCTFETKRKSNMVQHRLRHLKDSPDVPLLSCPDCNYTTVAKRHLNKHRKTHNVNPDKMFQCTYCPYKIHRKVYLMRHMENHKQVETYGNDQWQRYTFPPQPQMHITGITVVPNLGQNLPQHPLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444584;
- 90% Identity
- iTF_01239580;
- 80% Identity
- -