Ppte063488.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018382.1:47034084-47052397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00035 0.065 15.8 3.3 1 23 91 113 91 113 0.98 2 12 0.011 2.1 11.0 6.2 1 23 122 144 122 145 0.96 3 12 0.029 5.3 9.8 2.5 1 23 150 172 150 172 0.98 4 12 0.00047 0.088 15.4 2.8 2 23 182 203 181 203 0.96 5 12 1.8e-05 0.0034 19.8 1.3 2 23 213 234 212 234 0.97 6 12 0.00023 0.043 16.4 1.1 2 23 244 265 243 265 0.97 7 12 0.95 1.8e+02 5.0 1.5 2 23 306 327 305 327 0.94 8 12 0.013 2.5 10.8 3.5 2 23 337 358 336 358 0.96 9 12 0.0037 0.68 12.6 2.4 1 23 367 389 367 389 0.98 10 12 0.0067 1.2 11.8 1.8 1 23 398 420 398 420 0.97 11 12 0.14 26 7.6 3.1 2 23 426 447 425 447 0.93 12 12 0.00051 0.094 15.3 4.2 1 23 456 479 456 479 0.97
Sequence Information
- Coding Sequence
- ATGCTATTTGGTACTACAAAGATATATTCATCTTTTCTAAATCACCAAGCTTGTGCACTAATAATgtaCGATACTTTTTCCCCTGAGAAAATAGAGGTATCTGTGAGCACTGGAACTAGCGAAAACACAAGTATAAAGGAAGAAATACCTGAAATTGCCTTTAATGAAAATCAAGAAGATGGCTTTAAACAGGAAGAGTTTGAACCAAACGAAGTTACGACATCTGGTGAAAACGAACAAGAAAAACGGGACGATCCCCAACATGAAGATTTCAGATGCGAAAAATGCAATTATAAAACAATTGATAAACGTTATTTACGTAAGCACCTTCTTCGacataaaaaaactgaaaacggTAATTTCTTCAAATGCAACAATTGTAATTATCAAACCATCGAAAAAAGGAGTTTACATAGACATATTATGCGACACCACAAAGAAACCATATATAAGTGCGAAAAGTGTAATTACAAAACAGTTAATGAACTCTGTTTAAATATACATTTAGATCGGCACAAAAGAACTGAAAATGGCGGTTTTCTTCAGTGTAACAAATGCGATTATCAAACATTTCAAAAGCGTAACTTAAATAAACATCTCCTGCGACATGAAAATCACGAGGGAAAAGAACTCCTTAAATGCGACAAATGTGATTATAAAACAGTTAACAAAAGTAATTTGAATATACATCTACAACGACATAAAAGGACCGAAAAAGGTGCTTTCCTCAAATGCGACAAATGCGAATATCAaacaattaacaaatataattttcaaagacATATTCTTATACATAAAGATTACGAGGAATTTGAAGAGTGTTTATGTGAAAAATGCGATTACCGCACAATGAATACACGTTGTTTTAATACCCATCTTCTTCTGCACGAAAGGTCTGAAAATGATGCTTTCCTAAAATGCGACCAATGCGAATATCAGACActtaaaaaatggaattttaataaacatctCCTGCAACATGAAAATTACGTGGAAGCTGAAGTGTTAAGATGCGAAAAATGCAATTATATAACGAGTAATAAACACTGTTTAAGTGCGCATCTACTCTGGCATAGAACAGTTGAAGATGGTGCTATCTTTCAATGCGaaaaatgtgaatatcaaacaatgAATAAAAGTACTTTTAAAATACACCTGTTGAGACATAAAGATTTAAGTGAAGTTGTTACTTTCGATTGCAGCCAGTGTGAATTTAAAACCATCTATAAGGGACAATTAAAAACGCATCAACTTCGTCATCAAAATTCCACGGTTGAATGCCCTAAATGTGATTTCCACACAACTTGCCGAGACAACTTAAGGAAACACCTTGTGGGACATCAAAAAATAGAAGAAGGTACTGCTTATAAATGTAATCAATGTAATTATAAAACGATCAAAAAGGCAAATTTTAGAAGACATCAATTAAGAAAACATTAA
- Protein Sequence
- MLFGTTKIYSSFLNHQACALIMYDTFSPEKIEVSVSTGTSENTSIKEEIPEIAFNENQEDGFKQEEFEPNEVTTSGENEQEKRDDPQHEDFRCEKCNYKTIDKRYLRKHLLRHKKTENGNFFKCNNCNYQTIEKRSLHRHIMRHHKETIYKCEKCNYKTVNELCLNIHLDRHKRTENGGFLQCNKCDYQTFQKRNLNKHLLRHENHEGKELLKCDKCDYKTVNKSNLNIHLQRHKRTEKGAFLKCDKCEYQTINKYNFQRHILIHKDYEEFEECLCEKCDYRTMNTRCFNTHLLLHERSENDAFLKCDQCEYQTLKKWNFNKHLLQHENYVEAEVLRCEKCNYITSNKHCLSAHLLWHRTVEDGAIFQCEKCEYQTMNKSTFKIHLLRHKDLSEVVTFDCSQCEFKTIYKGQLKTHQLRHQNSTVECPKCDFHTTCRDNLRKHLVGHQKIEEGTAYKCNQCNYKTIKKANFRRHQLRKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -