Ppte076210.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus pterygomalis
Gene Symbol
-
Assembly
GCA_963969555.1
Location
OZ018385.1:46633624-46644429[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.7 6.9e+02 3.2 1.5 2 23 387 408 386 408 0.95
2 12 0.0016 0.3 13.7 4.4 1 23 414 436 414 436 0.98
3 12 0.00026 0.049 16.2 3.0 1 23 440 462 440 462 0.99
4 12 5 9.3e+02 2.7 1.3 2 12 514 524 514 536 0.69
5 12 5.5e-07 0.0001 24.6 3.0 3 23 547 567 546 567 0.99
6 12 0.072 13 8.5 0.6 1 23 573 595 573 595 0.97
7 12 2.8e-07 5.2e-05 25.6 0.5 1 23 601 623 601 623 0.99
8 12 2.6e-06 0.00048 22.5 2.8 2 23 629 650 629 650 0.98
9 12 1.4e-06 0.00027 23.3 3.7 1 23 656 678 656 678 0.99
10 12 0.0011 0.21 14.2 3.1 1 23 684 706 684 706 0.98
11 12 0.00056 0.1 15.2 3.0 1 23 712 734 712 734 0.97
12 12 0.00051 0.095 15.3 4.7 1 23 745 768 745 768 0.97

Sequence Information

Coding Sequence
ATGGACCAAGAAAACGATGAAAACTTGGTCAAAATTACAGATATTTGTCGAGCTTGCCTGTCTAGAGCAGAGACCATGAAATTTCTACTAGAAGACAGCGAAGAAATTCTCAGCTTACTCTCTAAATTCTCTTCCGTCTCTAATTTAGAGATAGAAATTGGTTTTAAGTACCCCTCATACCTTTGTACTATCTGTGAAGAAAAAATTCTTAGTTCCTACGAGTTTCAACAACAGTGCCATAAGTCCAACGAATTGATTCAAGAATACCTCGCAGTCTTTgaaaaagaAGATACGATTCCTTTGAGATCAGAGCCAGAAATTAGTTTCCCCGACCTAAATACCTTGGAAGAAGAAAGTATTGTTGAAGAGCTTCAGAATACTACACAAACGGTGCAACCTATATATGAAGAAATTTCCAATCCTTCTTGTGAAGACAGTGAACAAGATAAAGCTAAATGTGATAGAAAATTTCAAGAAGATTTAAGCCAAGCTACATtagatttggaaaaaaaatataaggatGACAATGTTCACATAGaggaagaacataaaaatgacATTGATCATCTCTACAGACACCAACCAGtttctAGTGAAAATCTGCATCATACAATTGAAACAGCTGTTCAGAAAAATGAATATATCATATGCACTCAGAGAATTGATAGTCAAGATGTGTTAAATGCTGGTTCCAAACAATACATGTGCAAGTTTTgcaataaactatttttaacacaaaaacaTAAATGTAACAGAGGAAAAAGAAAATGGAAGGAAGACTTAGTTGAGGAAATAAAGACAGCAAATAATACCTTGCAGAAGGAAGaagaaaaaaaaatcgacgaGACATATAACCAACTGGatgaatttaaaaactttaacccAGTAGAAGTTTCACTCAAAAATAGAACTCTCCAAAAAATGAGGTTGAAACAATATTCTGTGGAAGACATCAACAAGGCaataaatatattcaaaaagaaattttacaaGCATGtcaattgtattttttgtactTTCACTGCTGTTACGAATAGGAGTTTGTCGGTGCATGTAACTAGAGTGCATAGAGAATACAAAAACAAATGGTGTTCATCTTGTAATCAAGTTACTGAAAATCAAACTAATCACAATAAGGAAGTACATTATGAGGATCTAAAGTGtcctttttgtagaaaaataaaaaataacatgggcCATTTCATGGAGCATTTGGCAAGTCACTCTGcTGAAAGGTTCCATAAATGCAACATATgtattaaatcatttatttctcaaAGACATCTGAGGATTCATAAAGCAACACACAAGCCAGAATTTAAGTGTGGCGTATGTAAAAAAAGATTTGTGCAAGATCTACATTTAAGGGATCACCTTAAAACTCATCAAAGTTCTGACCAGAATAGCACAGACAGTCAAAGCGATTTTATAGAATTAGACGTAGTCAAAAAGGAAGATAATGACAACAACAGAAAGAACAGCTTAAATTGCAAATCTGAATATGATGAAATCCAAGACGCACCGGAAAAACCTCACAACTACTGCAAAGATtgcaataaaaaagtaagaagcTTACTCAGCCACTATCTTCAGCATCACGAAAAAACAAAATCTGAAAACACCGACAGACAGAACCTGTGTCCCCACTGTGGCAAGAGGTTTAAGACAACATCCAAACTGACTGTACATATACGAACACACACAGGGGAATCTCCATATAAGTGTCAATATTGTGACAAATGGGTGAAAACGAGAAATATTTTGATTGTTCATGAACGGACGCATACTGGAGAGAAACCGTACACGTGTACCATCTGtggaaaaAGTTTTGCCCAATCCAGTGTGTTAAACACGCACACAAGGATTCACACTGGAAGGCCGGAACAGTGTACAATCTGCGAAAAAAGGTTCTGTCGTCCTGCCGAATTAAGGTTGCATATGAGAAAACATACAgGTGAAAAACCATACACGTGTCCTCATTGTGGATTAGGTTTTAAACAAAAGAGCCACCTGGTCGAACACACGAAAACACATAACGACGACAGGCCATACCAGTGTGAATTTTGtgaaaaagcatttaaaaatagAGGGACTCTTAAATGTCATCTTCAGATACATTCCGgtcAAAAACCATTCAAATGTTCTCAATGCTCCTACGCGTGTAGACAGCCTTACAGTCTAACCCAGCATATGGTTCAACATGACAATGACAAGCCTCAGTTGGACTACCCTCATAagtgtcaaatatgtcagaggAATTTCGCTACTACAGCGCATTTGACAGCTCACTATAatagGTTTCATCcagacttaaaaataaaattcttagatACCTTGGAGCAACCAGCTCTTAATAATCAAATAATCATATCGGACAGTGCTATCGATCATGAAACGGCAAATCAAGGCGATGAGGATAATTACCAGATATCCCAGGAAACTCAAATAGAATCTAGCCAGATTAGTTTGGTTGAATCAGTTGGAAACGTCGATACTATGATCGTTCAAGCCGAGATTCAAGACGGTACAGGTGGAGAGATTAAGTACGAACCGATTCAGATTCAGTTTTCTACAATACACGAGTGA
Protein Sequence
MDQENDENLVKITDICRACLSRAETMKFLLEDSEEILSLLSKFSSVSNLEIEIGFKYPSYLCTICEEKILSSYEFQQQCHKSNELIQEYLAVFEKEDTIPLRSEPEISFPDLNTLEEESIVEELQNTTQTVQPIYEEISNPSCEDSEQDKAKCDRKFQEDLSQATLDLEKKYKDDNVHIEEEHKNDIDHLYRHQPVSSENLHHTIETAVQKNEYIICTQRIDSQDVLNAGSKQYMCKFCNKLFLTQKHKCNRGKRKWKEDLVEEIKTANNTLQKEEEKKIDETYNQLDEFKNFNPVEVSLKNRTLQKMRLKQYSVEDINKAINIFKKKFYKHVNCIFCTFTAVTNRSLSVHVTRVHREYKNKWCSSCNQVTENQTNHNKEVHYEDLKCPFCRKIKNNMGHFMEHLASHSAERFHKCNICIKSFISQRHLRIHKATHKPEFKCGVCKKRFVQDLHLRDHLKTHQSSDQNSTDSQSDFIELDVVKKEDNDNNRKNSLNCKSEYDEIQDAPEKPHNYCKDCNKKVRSLLSHYLQHHEKTKSENTDRQNLCPHCGKRFKTTSKLTVHIRTHTGESPYKCQYCDKWVKTRNILIVHERTHTGEKPYTCTICGKSFAQSSVLNTHTRIHTGRPEQCTICEKRFCRPAELRLHMRKHTGEKPYTCPHCGLGFKQKSHLVEHTKTHNDDRPYQCEFCEKAFKNRGTLKCHLQIHSGQKPFKCSQCSYACRQPYSLTQHMVQHDNDKPQLDYPHKCQICQRNFATTAHLTAHYNRFHPDLKIKFLDTLEQPALNNQIIISDSAIDHETANQGDEDNYQISQETQIESSQISLVESVGNVDTMIVQAEIQDGTGGEIKYEPIQIQFSTIHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-