Ppte051958.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018380.1:28828581-28858143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.1 1.3e+03 2.3 0.9 1 11 52 62 52 69 0.65 2 14 0.00079 0.15 14.7 0.7 3 23 188 208 187 208 0.97 3 14 5.4e-07 0.0001 24.7 0.5 1 23 217 239 217 239 0.99 4 14 0.0012 0.22 14.1 4.1 1 23 245 268 245 268 0.97 5 14 7.8e-06 0.0015 21.0 0.2 3 23 276 297 275 297 0.96 6 14 0.3 56 6.6 2.1 1 23 303 326 303 326 0.94 7 14 0.24 45 6.9 1.3 2 23 331 351 330 351 0.92 8 14 3.3 6.1e+02 3.3 1.5 1 23 365 387 365 387 0.75 9 14 1.5e-05 0.0027 20.2 1.4 2 23 413 435 412 435 0.96 10 14 0.00023 0.042 16.4 1.6 1 23 441 464 441 464 0.93 11 14 0.011 2 11.1 0.5 2 23 469 489 468 489 0.96 12 14 0.026 4.9 9.9 2.1 1 23 499 521 499 521 0.94 13 14 2.9e-08 5.4e-06 28.7 2.1 1 23 527 549 527 549 0.99 14 14 0.097 18 8.1 12.6 1 23 555 577 555 578 0.90
Sequence Information
- Coding Sequence
- atgtcttatGTAGAATGCAGAACCTGTTTAGAATCAATAAGGGGTACAAGTATTATTAGTGTAGAAGCCAATCTAACCGATGAAAAAAATGTTCTCCAAGCTATTGAGGAAGTAACATCTTTAAAGGGATCTAATGACGACCTCTTTCCACAATAtgtatgtaaaaaatgttttaaatatcttaaatcTATAGTTACATTTCGAAGGCTAATTATTTCTTCATATACAGAATTTAAAaggaaacttacaaaaaatcaGCAACACTTAAATAAAAAGGTTTCCAGTTTTGatgaatttataataattaaagcaCAACCAGAAATAAGAACTGATATAAAAATCGAAAAGGATTCACTGAAAATCCAAGAAAGGGCGgtagtagaaaataataaagacGAGGAGGTTAAGGCTGAATCAGAGGATGATATATTTGAATTTGGtgATGGTATAGATGTAGATCAAGCAGAAGTGCCTGTTAACGCTGAACCGACgtataaaacaaaagaaataagTGTGATGAAAGAAAAGGATGTAACTATATCGAAAAATACGCATCGAAATTGTTCAATATGTGGAAAAGTTCTAAAGGGCAGACGGaaatataatgcTCATATGAAACTGCATACTAGCCAGATTCCACCTTTAGTCTATGTCTGTCCCGTTTGCCCAAAACAGTTTTCCCAGAAGAGATATCTGATAGTGCATAGAAGAAGTCATACAGGAGAAAAACCGTTTCACTGTGATATTTGCAATAAGAATTTTAGTCAGTTTGCCAGCTTTTACGTTCATAAAAGAAGATTGCATGATAAAGTTGTAAAAGGTATGTGCAACTATTGCGGTAAGAAGTTTGTTGATAAACAAGAGCTGGATGTACATATAAAAATGTGGCATACAGGCGAAAGACCATATTTGTGTGAATTCTGCAGTGCTGCATTTGTTTGCAACAGAACCTTGCAACGACATAGAAGAGAGCTTCATTCTGAGaaaaaaccatGTCATAAGTGCGGCAAAATGTTGGGTGACTATGCCTTAAAGAAGCACTTGGTTAGACATTCGGTATTAGAAGAAGGGTTAaaaataacaagaaaaaaatatacgTGCGAATATTGTAATACAGTTATGAACTTTACATCAAGAAGAAGGCATCTAGAAAAACAGCATGGTGTAAAATTATATGGTATgTCCTCAAGTTATCTCTACACTCATAAAAGAATTCATacaggtcttaaaaaaattaaatgcgaGATGTGTCAACATGCATTTAGTAATTCTGACCAGTTGCAAATTCACATCAGGCAAAAACATACTGGGGAAAAACCATATTTGTGTGAAATGTGCAGCCATGCGTTTACAAGTAGCAGTGCCTTGTTTAGACATAAAAGGGATGTCCACGATcagAAGATTAAATGTCCAATATGTAACAAACTATACAGTAACCGAGTATTAAAAGAACATATAAAAAGACATAAGGAAAAAGACGAGGGGATCAAGAGATTCATCTGTGATTTATGTGGTAAACGATTTACTTGCGCTACAAGCAGGAAAAGACATTTAGTTATACACAGTGGAGAAAAAGCCTATAAATGTAAGGTATGTGAAAAATCATTTAATCAAAGCTCAACCTTGCAAACGCATATGAGAATTCATTCTTTGGTAATGCAGTTTCATTGTGAAATATGCACAAAAAGTTTTAGATACAAACATCATTTAAAAATCCATTGCGAAAAGCACCATAAAATGGAAGACCATGGTTCTGATAACACGCAACAAcatgaaaatattttgattaaggctgaataa
- Protein Sequence
- MSYVECRTCLESIRGTSIISVEANLTDEKNVLQAIEEVTSLKGSNDDLFPQYVCKKCFKYLKSIVTFRRLIISSYTEFKRKLTKNQQHLNKKVSSFDEFIIIKAQPEIRTDIKIEKDSLKIQERAVVENNKDEEVKAESEDDIFEFGDGIDVDQAEVPVNAEPTYKTKEISVMKEKDVTISKNTHRNCSICGKVLKGRRKYNAHMKLHTSQIPPLVYVCPVCPKQFSQKRYLIVHRRSHTGEKPFHCDICNKNFSQFASFYVHKRRLHDKVVKGMCNYCGKKFVDKQELDVHIKMWHTGERPYLCEFCSAAFVCNRTLQRHRRELHSEKKPCHKCGKMLGDYALKKHLVRHSVLEEGLKITRKKYTCEYCNTVMNFTSRRRHLEKQHGVKLYGMSSSYLYTHKRIHTGLKKIKCEMCQHAFSNSDQLQIHIRQKHTGEKPYLCEMCSHAFTSSSALFRHKRDVHDQKIKCPICNKLYSNRVLKEHIKRHKEKDEGIKRFICDLCGKRFTCATSRKRHLVIHSGEKAYKCKVCEKSFNQSSTLQTHMRIHSLVMQFHCEICTKSFRYKHHLKIHCEKHHKMEDHGSDNTQQHENILIKAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -