Ppte013836.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018376.1:4567006-4587560[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.098 18 8.1 2.2 1 23 305 327 305 327 0.96 2 12 0.0016 0.29 13.8 0.7 2 23 401 423 400 423 0.94 3 12 2.5e-05 0.0046 19.4 1.4 1 23 429 451 429 451 0.98 4 12 0.00067 0.12 14.9 1.0 3 23 464 485 462 485 0.96 5 12 1.4e-05 0.0027 20.2 4.2 1 23 490 512 490 512 0.97 6 12 0.091 17 8.2 5.1 1 20 518 537 518 540 0.93 7 12 0.00016 0.03 16.9 4.5 1 23 546 568 546 568 0.98 8 12 6.8e-07 0.00013 24.4 0.3 1 23 574 596 574 596 0.98 9 12 7.8e-06 0.0014 21.0 1.8 1 23 602 624 602 624 0.98 10 12 0.0065 1.2 11.8 5.1 1 23 630 652 630 652 0.98 11 12 0.05 9.4 9.0 3.4 1 23 658 680 658 680 0.98 12 12 3.4e-05 0.0064 19.0 3.9 1 23 686 708 686 708 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAGGaaaatttattatcaaattCCCAATATTGTAGGCTTTGTTGTCAAGAAAATCAAAATGGTATACATTTATTCACTGACGAGGATAATTCGGGGGATCTCAGCTCTCTGGTCAACAGATATTTGCCGATCAAGgtagATATCGAAGATCCTTACCCAAAATTAATATGTCCTGGTTGCCACATTCAACTCGAAGCAGCAAAACTGTTTATGGACCTTATTCTCGAAGGACAAGCCAAGTTACGGAATCTATTAAAAACACAACAGGACCGTGTCGACAGAGaagagaaagaaagaaaaaaattggaaGAGGCATTAAAGAACCATAATCCGAATGCCAGCGTTGAGACATATACCATTCAGACGGATGAAAATGGGGAAAAATTTATCATACAAATTTACAGTGAGGGTCCGCTGTTTTTGCCAGAACATGAATTGGCCTGGAAAGCAGAGGGTCTTAATAAACCAAAGAGAAAGAGGGGTCGACCACCAAAGGCTGTAGTAAATCCTGAGCAATCGGACAAAGGTTCCGAGGAACAAGGTGAAGTAATAGATGTTGATACAAGTATGCCAGTAATTGTAAAGAACGAAGTAACTGAAAAAGAAGAAATAATAGCAGATGATTCTgataaaagaagaaaaagaagaattAAGGCTCCTGCTAGATATGCAGGAGTTGTGCAAggcAGGGAATTAGATAAAATCCTGAAAAATGAGGGAGTGATAGATGAAGACATTGAAGATGTTATGGAAGAAGAAAGAAACGATGAAGGAAATTCGGAACAGGAAAGTGAGTCGCCCATAGGACGTGTTGTTACCAATGACGGTGCATCAGACGAACCTGTGTATCCAAATAGGAGacgtgttaaatttaaaaaatatagaggccatAAGCAAAAGCCAAGATACGCCTGCGATATATGCAATAAGGAGTTTCAGCACATTGGCAGGTATGAATACCATAAAAAAAGTCACAAAATCAAATTTGCCTGTCAAGCACGAGGTTGTCAGTTTCAAGATGGGAACAGAAATATTGTTGAACAACATCAGATTGGCACTGAACACGAGGGTATCTCAAAAATTGAACACATTGAGGCATATGATGGAACCATAATTCTACCAGATTCCAGTTCTCTAAATAGTACGACGGGAATGTTTGAAGTTTCGCCGGAAGTTTCAGAAGAGAAACCGATAACGTGTCCGATTTGTAACAAAAGTTTCGCTTGTAAACAGAACTACGAGGTTCATCTTAAGGCGATACATGACAGGGAGAAGCCctttaagtgcggtaaatgccCAAAgtCCTTTGCTTACGCTTGCAGTCTTAAAGCGCATGTCATGTCGCACAACAACAAGGATTATGGCGTGGTGGGACAGTTCGGGTGTGATAAGTGTGAGAAAATTTTTAACCATCCTAGCAGCTTAATATATCACAAAGAGACGGAACATGGAACTCAGAGgtttatttgcAATAAATGCGACAGATCCTTTAAACACCGTCAGCTTTTGCAACGACATCAAACCGTTCACACGGAAGAGCGACCATTCCACTGTACAGCGTGTTCGCAAACGTTCAAAACCCGAACTAACCTGATCAACCATGAAAATTGTCATACGGGATTGAAGAAATTCACTTGTTTCATCTGTGGTCAGTGTTTTATGCATAAAACTTCTCTCTCGGCCCATTTAAGATGGCACGAAGGCGACAAACCTTACGAATGTGACGTATGCAAGAAAGCATTCTCTCAAAAAGGGAATTTGATCGAGCACAAGCGGATTCACACGGGAGAGAAGCCCTACACCTGCGATTTGTGTGGAAGGAGCTTCACCACTTCCTCACAGTGGAAGCTACACAGCAAACGTCATACAGGAGAGAAGCCTTACAGTTGTGAATATTGTCAGAAACGTTTTCTACACAAAGATACGTTTGACACCCACATAAGGAGGCATCTGGATATACGTCCGTACAAGTGTTCGTTTTGTGAGAAAAAGTTTGCCGAATCATGGGCCTGTTCGAGACACCAAAGGCTACATTTGGGGGAGAAACCGTATCATTGTGACGTTTGCTACAAAACGTTTTCCGACGcgtcaaattttaacaaacaTTCAAAAATGCATCTCAGAAACGGCATAAAACCGAGTAAATTGGACGTAGAAGCTCAGAAGGTCAGTAAAGAGACTCGGTTTCAGTCAGATTCGATTGATGTGGAAATTATTATTCCCTCCGAACCAATGACAACGCCGCAGAAGGAAGCTGACACAGAGGTAACCGTCGAAAAGCTAGGATTAAGGTTAAGTTTGGTAAATAACACGCACGGCCGGCCCCTAAGGAGTGTCAAGgttatctCGTCAAACGACCTTCAGTTCCAGGAGCTTTTGGACGGCGACGGGAACATAATCAGCTTGACCACCGCCGAGGGTCAGCCCATTCCTATAGTTTCGTCGGACAATGAAAAAATCCAAGGGTTGATGCCTGACGGGACCCTGGTCAGTTTCGATATACTGCCGGAGGGACAGAGCAATAAGTCTCAAAGCGAACCggaaaaggagaTCACCAACCAACAAATTAGTCTGATTAACACAGAAATCCAGTTCCTAGAAGAAACCTCCATGTCAAGTACTGTCAGTGCGGACAAGCCCGCTTTTCTATCAGAGGACGGAAAAGTTTGTTTTATATCCTCGTTCGACGAGAATTCTTTCTTAACTATGAGCTAA
- Protein Sequence
- MEQENLLSNSQYCRLCCQENQNGIHLFTDEDNSGDLSSLVNRYLPIKVDIEDPYPKLICPGCHIQLEAAKLFMDLILEGQAKLRNLLKTQQDRVDREEKERKKLEEALKNHNPNASVETYTIQTDENGEKFIIQIYSEGPLFLPEHELAWKAEGLNKPKRKRGRPPKAVVNPEQSDKGSEEQGEVIDVDTSMPVIVKNEVTEKEEIIADDSDKRRKRRIKAPARYAGVVQGRELDKILKNEGVIDEDIEDVMEEERNDEGNSEQESESPIGRVVTNDGASDEPVYPNRRRVKFKKYRGHKQKPRYACDICNKEFQHIGRYEYHKKSHKIKFACQARGCQFQDGNRNIVEQHQIGTEHEGISKIEHIEAYDGTIILPDSSSLNSTTGMFEVSPEVSEEKPITCPICNKSFACKQNYEVHLKAIHDREKPFKCGKCPKSFAYACSLKAHVMSHNNKDYGVVGQFGCDKCEKIFNHPSSLIYHKETEHGTQRFICNKCDRSFKHRQLLQRHQTVHTEERPFHCTACSQTFKTRTNLINHENCHTGLKKFTCFICGQCFMHKTSLSAHLRWHEGDKPYECDVCKKAFSQKGNLIEHKRIHTGEKPYTCDLCGRSFTTSSQWKLHSKRHTGEKPYSCEYCQKRFLHKDTFDTHIRRHLDIRPYKCSFCEKKFAESWACSRHQRLHLGEKPYHCDVCYKTFSDASNFNKHSKMHLRNGIKPSKLDVEAQKVSKETRFQSDSIDVEIIIPSEPMTTPQKEADTEVTVEKLGLRLSLVNNTHGRPLRSVKVISSNDLQFQELLDGDGNIISLTTAEGQPIPIVSSDNEKIQGLMPDGTLVSFDILPEGQSNKSQSEPEKEITNQQISLINTEIQFLEETSMSSTVSADKPAFLSEDGKVCFISSFDENSFLTMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196614;
- 90% Identity
- -
- 80% Identity
- -