Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018385.1:16183912-16185849[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0011 0.2 14.3 0.7 1 23 21 45 21 45 0.97

2 15 8.6e-06 0.0016 20.9 0.4 1 23 63 88 63 88 0.95

3 15 0.3 56 6.6 0.4 1 23 107 131 107 131 0.96

4 15 7.9e-06 0.0015 21.0 0.9 1 23 138 163 138 163 0.95

5 15 0.0029 0.54 12.9 0.6 4 23 177 199 175 199 0.89

6 15 0.023 4.3 10.1 2.6 1 23 234 258 234 259 0.94

7 15 0.0082 1.5 11.5 4.6 1 23 265 290 265 290 0.96

8 15 7.1e-06 0.0013 21.1 0.8 3 23 303 326 302 326 0.91

9 15 2.1e-05 0.0039 19.7 2.9 1 23 394 419 394 419 0.97

10 15 0.00047 0.087 15.4 0.3 3 23 432 455 431 455 0.92

11 15 0.00013 0.024 17.2 3.3 1 23 460 483 460 483 0.95

12 15 0.78 1.5e+02 5.3 8.0 1 23 489 511 489 511 0.98

13 15 0.019 3.5 10.4 3.7 5 23 517 537 514 537 0.91

14 15 0.0041 0.76 12.5 0.7 1 23 543 566 543 566 0.94

15 15 0.1 19 8.1 5.0 2 21 576 597 575 599 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0011	0.2	14.3	0.7	1	23	21	45	21	45	0.97
2	15	8.6e-06	0.0016	20.9	0.4	1	23	63	88	63	88	0.95
3	15	0.3	56	6.6	0.4	1	23	107	131	107	131	0.96
4	15	7.9e-06	0.0015	21.0	0.9	1	23	138	163	138	163	0.95
5	15	0.0029	0.54	12.9	0.6	4	23	177	199	175	199	0.89
6	15	0.023	4.3	10.1	2.6	1	23	234	258	234	259	0.94
7	15	0.0082	1.5	11.5	4.6	1	23	265	290	265	290	0.96
8	15	7.1e-06	0.0013	21.1	0.8	3	23	303	326	302	326	0.91
9	15	2.1e-05	0.0039	19.7	2.9	1	23	394	419	394	419	0.97
10	15	0.00047	0.087	15.4	0.3	3	23	432	455	431	455	0.92
11	15	0.00013	0.024	17.2	3.3	1	23	460	483	460	483	0.95
12	15	0.78	1.5e+02	5.3	8.0	1	23	489	511	489	511	0.98
13	15	0.019	3.5	10.4	3.7	5	23	517	537	514	537	0.91
14	15	0.0041	0.76	12.5	0.7	1	23	543	566	543	566	0.94
15	15	0.1	19	8.1	5.0	2	21	576	597	575	599	0.93

Sequence Information

Coding Sequence: ATGAACTTAACTACAACCGAGGCTGACTCAACAACACAACAGCCTCCAACTACCAAAACCTATCAATGCGACTTCGACAACTGTGAAATATCATTTTACAaactatttgatttaaaaagacACATACAGGCACATCTTAGAGGTACCGCCAAGCCAACTGCCAAAGAGTTGATCAGTAAACAGATATACGCGTGTCAAGCTACTGGGTGTGGTAGATCGTTTACCAGAAAATGGTCACTATCATTACATCAACGGAGAATACATAGCGGcagtgaaaataaaaaacatagcaGTGAAAACATACAGGAAAATACGTGGTATAAATGCGATGAAGTGAATTGTGGGGCAGTGTTTGCGCTTTGTGATCGACTAGATGAACATAAACTTAAACACCTAGTTGCAGAGCGACCCTTTATATGTGATTCTGAAGGATGCGACAAGAGCTATAGCAACAACGGTCATTTAAATAGGCACAAAATGACTGCACATTGTCTAGAAAAAGATAAACAGCAACAGCAAGTTTTGTGTGGCATCGATGGCTGTGATAAAACTTATTGCAACAAATATGTCCTTAAACAGCATATTGACAAGGTTCACATGTTTGTGGTAGTACCATCTCAACTGAACGATGGCTCTGTAATTAAGTGCGAAAACGCTGTTAAACCAGTAGTTAAGAAAAGGTCTGATATTGAAAAACGTCACAAATGCGACCAAGTCGGTTGTGATGCTGCGTTTAGGCGCCCCTATAGGCTGAAATACCACAAAGTATCTCACCATGGTGGTGATAAACCGTTCAAGTGTGACTTTTCAGGGTGTAGTCATAAATACACAAGTAATAGTCATTTGGTGCGACACAAACTTGTCAGCCATTTTCCAGATAATGTCGTTCCAGATGTGTTTGCTTTTTGTGAGGTAAGAGGTTGCGGTAAAGTGTTTAAGAATAAATATAACCTCAAAAAGCATACAGCAATAAAACATGTAGTTGCCCCGCCTTCATTGTGTCATGAGGTTAAGATTGAAGATTCCCTTAGCGGAGAAGAAATTAAAGTTGAAGCGAGTGGTATTGATGTTGGTACTAAAGAACCTTATAAATGTTGCGTACCAGGCTGTATTGCCGCATTTACTGAAATTTACCGGTTGAAGAGCCATTGCTTGAATGTTCACGGCGAAGATAGGCCATTTAAATGTGACTATAACGGTTGTGACAAAAGTTACAGGAACGTATCACATTTAACAAGACATAGAATCACAAGTCACTGTCCAGTAGAAACTGGCTTAATGAAAGAAGTTATTTGTGAAGTAGAAGATTGTGGAAGAATTTTTTTCAGTAATTACAGCTTAAGGAAACATACCATTAGAAGCCATGGGGATCTTCCCTTTCAATGTACAGAATGCGACGAAAAGTTTAAACGAAAAAAACGACTTCGCGCACACAAATATAAAGAACATGAAAGTAAAGCGGCATTTAAATGCACAGAGTGTTCCAGAAGTTTTGTATGTTACCGTTCGTTTGACCGGCACTTAAGGCATCACAAGATTCACCGGTGCGATTGTGACAAAATGTTCGACAAGTGGTCAAAACTAGTGAAACATAGAAACACCGAGTGTCACGCTGACAGGAACCAACATGCGTGCGAATCTTGTGGAAAAGGATTCTTTTTGAAAGAGAACTTAGTGCTTCATCGCTTGCGTGTACATAAAATCAAATCTGAAATTAATCTGTGCAGGTGTCCGTTTATAGACTGCAAGAAGTCGTACAAGTATAGTTGGAATCTCGACTACCATATAAAATGCCATAAAATCGTTTCGGAGAAAACTGAGGCTACAGAGAGGATATGCGAGAAGCAAGTTAAGGATAAGATATATGGAAAGGTGGCAAGAAAATCTAAGTTAGTTAAAAATAGAAGAGACTGTAAGGCAAATAATAAGACCATGTAA
Protein Sequence: MNLTTTEADSTTQQPPTTKTYQCDFDNCEISFYKLFDLKRHIQAHLRGTAKPTAKELISKQIYACQATGCGRSFTRKWSLSLHQRRIHSGSENKKHSSENIQENTWYKCDEVNCGAVFALCDRLDEHKLKHLVAERPFICDSEGCDKSYSNNGHLNRHKMTAHCLEKDKQQQQVLCGIDGCDKTYCNKYVLKQHIDKVHMFVVVPSQLNDGSVIKCENAVKPVVKKRSDIEKRHKCDQVGCDAAFRRPYRLKYHKVSHHGGDKPFKCDFSGCSHKYTSNSHLVRHKLVSHFPDNVVPDVFAFCEVRGCGKVFKNKYNLKKHTAIKHVVAPPSLCHEVKIEDSLSGEEIKVEASGIDVGTKEPYKCCVPGCIAAFTEIYRLKSHCLNVHGEDRPFKCDYNGCDKSYRNVSHLTRHRITSHCPVETGLMKEVICEVEDCGRIFFSNYSLRKHTIRSHGDLPFQCTECDEKFKRKKRLRAHKYKEHESKAAFKCTECSRSFVCYRSFDRHLRHHKIHRCDCDKMFDKWSKLVKHRNTECHADRNQHACESCGKGFFLKENLVLHRLRVHKIKSEINLCRCPFIDCKKSYKYSWNLDYHIKCHKIVSEKTEATERICEKQVKDKIYGKVARKSKLVKNRRDCKANNKTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -