Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018379.1:2607572-2619944[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 21 7.9 0.9 1 19 231 249 231 252 0.94

2 10 0.0016 0.29 13.8 1.1 1 23 264 286 264 286 0.98

3 10 0.00045 0.084 15.5 2.3 2 23 343 365 342 365 0.92

4 10 1.7 3.2e+02 4.2 0.1 1 19 428 446 428 449 0.79

5 10 2e-05 0.0036 19.8 2.1 2 23 477 498 476 498 0.97

6 10 1e-05 0.0019 20.7 1.0 1 23 504 526 504 526 0.98

7 10 2.8e-06 0.00052 22.4 1.2 1 23 532 555 532 555 0.96

8 10 1.2e-07 2.3e-05 26.7 0.6 1 23 561 583 561 583 0.99

9 10 3.3e-07 6.1e-05 25.3 2.1 1 23 589 611 589 611 0.99

10 10 0.00013 0.023 17.2 3.0 1 23 617 639 617 639 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	21	7.9	0.9	1	19	231	249	231	252	0.94
2	10	0.0016	0.29	13.8	1.1	1	23	264	286	264	286	0.98
3	10	0.00045	0.084	15.5	2.3	2	23	343	365	342	365	0.92
4	10	1.7	3.2e+02	4.2	0.1	1	19	428	446	428	449	0.79
5	10	2e-05	0.0036	19.8	2.1	2	23	477	498	476	498	0.97
6	10	1e-05	0.0019	20.7	1.0	1	23	504	526	504	526	0.98
7	10	2.8e-06	0.00052	22.4	1.2	1	23	532	555	532	555	0.96
8	10	1.2e-07	2.3e-05	26.7	0.6	1	23	561	583	561	583	0.99
9	10	3.3e-07	6.1e-05	25.3	2.1	1	23	589	611	589	611	0.99
10	10	0.00013	0.023	17.2	3.0	1	23	617	639	617	639	0.97

Sequence Information

Coding Sequence: ATGGAGAATTCCGACGGAAGAGAATTGCTAGAAAATGTAGTTATAACGTCGGAAGGGGCAGATGGACCCCAATATATTAGATTGGCAGAAAACTCACAAATTATCAGCTCCGAGTTGCTACAAAATCACAATGGGCTCGTTGTGGACTTGGGTGGGAATGATTTTATTCCAGTTACTTATAGttctgAAGATATTTTGACTCAAGAACTAACAGAAGAAGACCGTAACTTAGCTGCAGCGTTGGTGGCTGTGCAGCTGAGTCAGCAGCAGAAACAACAACAGCTTCACGATGCTTCTCTACCTCCTCTTATCACCGGTAATAAAATACTCGAAGACCACCAACAGCTAATATTAACTCAAGACAAAGCCACTGGTAACACCCAATATCTCAAAATCGTCAACTCCGATAATCTATACATCGACCAGCACGTTGGTGTTCATAAAATCGTAGAGAACGTCAGGATTATTGAAGACACCGATGACAATATTTCCATACATTCGGTGCACGCCTCTGACCTGTCCCAGCCCATTCACGAGAACAAAATTGAGATTATCGAGAAAACTGATGATGAGAAAATGGACTCTGATCGAGAATCATTCAGgaATGATAATCGTGCTTCCAAAAAATCACTTCCACACAAAAAGAGGATAAGTAGAAAGCTCCGCAAAAACAGCACAGTTTTAAAGAAATACACGTGCAGTTTCTGCAACGACACGTTTTTCAATAACGACGAATATCAGCAGCACGAGGGTACGTGTAACGCGGCAAAGGTGCCAACCAGCTCTCCATTTTCGTGCCAGTTGTGTAATACGCCGTTTGCCGATCAATTGCAatttttcgaaCATCTGAAAAAACATTATGAACCTGGTGGCCTGGGTCTGCCATCCGCCGAGGCCCCGAACTCTGCGCCAGTGGTTGAAGAGAAGAAGAAGAGGCCTAGTCCGCCTCCGAAACAGGAGAAGAAGGCGCCCCTTGTCGACGATAAGCAACCCCAAGAGACTCTGTTGTCGAGTTTGCTCAGTTTGCAGTGTATCGAGTGCAATAAGACTTTCAGgagaCATAAAACGTTTGAAGCTCACATGAGAGATGTTCACACTAATAAGCCAGAGCCGGAGGATGAGTTTTCCGACACAGAGGATATGATGGCAGgTATCAACGTTATGGTGGACGACGACAGTATTCAAGGCGACGACGCTGAAGACGACAGCAAGGCGTGGTACCAAGAGGAAGAGCTGCACCAAACGGAGAAAGATCTGGAAGAGTTGGAGGACAAGAACGAGCACGTCTGTCATTTGTGTAAGCAGCCGTTCGCGCTCAGGGCCATTTTGTTGCAGCATTTGGTCACTTGTCGGGTGGCCAGTGGAATGACAGaaccGACGCCAGCAGTAATAGTCcgtaaaaagaacaaaaaaatcaagGAAAAACTTAGCTGCGAGCTGTGCGACAGAGTTTTCAAACATCGAAATTCTTTGGTCTATCATATGAGAAGTCACAGTGGCATTAGACCTCATCAGTGTGAACTCTGTGGAAAAAGCTTTTTCGCGTCCAGTGCCCTAAAAGtcCATCTACGACTTCATTCTGGAGACAAACCCTACGACTGTGAGCACTGCGGGAGAAAATTCAGGCAATGGGGTGACTTGAAATACCACATAACATCTATTCACTCCACCGAGAAAAATTACCAGTGCGAATATTGCGGCAAAGAATTTGCCAGGAAATATTCCTTGGTTGTTCATAGAAGAATCCATACCGgtgAACGGAACTATAAATGTGAGTATTGCGGGAAAACGTTCAGAGCTTCATCGTATCTTCAAAACCACCGGAAAATTCACACTGGTGAGAAACCGCACAATTGTTCGATCTGTTCCAAACCGTTCCGTGTACGTTCCGATATGAAGCGGCACGAAAAGACCCATGGAAAAATGGCGGCACCCAGGAATTCAAAGGCGCAGATAACTCAACCACCAACTCCGACGGAGTTTAAAGTGCACAAAGACGAAGTTGAGGAAAACGATGAGTCCAATGAGTTGCACATTGGCGAAGAGGAAGAGGCGGCGGAACACATTTTGGGTGGCTATGAACAGCAAGAGATTGAGATGATGAGCGGTACGGGCATAACAAAGAGAAATTTGTACACAAATGGGCACGAGCTATTTCTGGTTACATATCCCAACGAACTGGTCCCGAGGACCGCTGGTACCACAGAAACTTGGATACACACTACCAACGCTTag
Protein Sequence: MENSDGRELLENVVITSEGADGPQYIRLAENSQIISSELLQNHNGLVVDLGGNDFIPVTYSSEDILTQELTEEDRNLAAALVAVQLSQQQKQQQLHDASLPPLITGNKILEDHQQLILTQDKATGNTQYLKIVNSDNLYIDQHVGVHKIVENVRIIEDTDDNISIHSVHASDLSQPIHENKIEIIEKTDDEKMDSDRESFRNDNRASKKSLPHKKRISRKLRKNSTVLKKYTCSFCNDTFFNNDEYQQHEGTCNAAKVPTSSPFSCQLCNTPFADQLQFFEHLKKHYEPGGLGLPSAEAPNSAPVVEEKKKRPSPPPKQEKKAPLVDDKQPQETLLSSLLSLQCIECNKTFRRHKTFEAHMRDVHTNKPEPEDEFSDTEDMMAGINVMVDDDSIQGDDAEDDSKAWYQEEELHQTEKDLEELEDKNEHVCHLCKQPFALRAILLQHLVTCRVASGMTEPTPAVIVRKKNKKIKEKLSCELCDRVFKHRNSLVYHMRSHSGIRPHQCELCGKSFFASSALKVHLRLHSGDKPYDCEHCGRKFRQWGDLKYHITSIHSTEKNYQCEYCGKEFARKYSLVVHRRIHTGERNYKCEYCGKTFRASSYLQNHRKIHTGEKPHNCSICSKPFRVRSDMKRHEKTHGKMAAPRNSKAQITQPPTPTEFKVHKDEVEENDESNELHIGEEEEAAEHILGGYEQQEIEMMSGTGITKRNLYTNGHELFLVTYPNELVPRTAGTTETWIHTTNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01244462;
90% Identity: iTF_01239410;
80% Identity: -