Ppte051041.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018380.1:12326407-12338092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.9 5.4e+02 3.5 3.2 6 23 73 90 71 90 0.85 2 16 0.00028 0.051 16.1 0.2 1 23 93 115 93 115 0.97 3 16 0.092 17 8.2 0.2 1 23 121 143 121 143 0.93 4 16 0.044 8.2 9.2 1.7 1 23 175 197 175 197 0.97 5 16 7.9e-06 0.0015 21.0 1.3 1 23 203 226 203 226 0.94 6 16 0.9 1.7e+02 5.1 1.8 2 23 316 337 315 337 0.96 7 16 0.14 27 7.6 0.3 1 23 360 382 360 382 0.98 8 16 3.5 6.5e+02 3.2 0.3 1 23 386 408 386 408 0.96 9 16 0.032 5.9 9.6 0.1 1 23 414 437 414 437 0.97 10 16 0.0019 0.36 13.5 3.1 1 19 443 461 443 465 0.90 11 16 0.011 2.1 11.1 1.0 3 23 473 494 471 494 0.96 12 16 0.00012 0.022 17.3 0.3 2 23 506 528 505 528 0.91 13 16 1.3e-05 0.0025 20.3 1.2 3 23 542 562 540 562 0.96 14 16 8.1e-05 0.015 17.8 0.8 1 23 568 590 568 590 0.98 15 16 1.1e-05 0.0021 20.5 0.6 1 23 596 618 596 618 0.98 16 16 0.0033 0.62 12.7 0.1 1 21 624 644 624 645 0.95
Sequence Information
- Coding Sequence
- ATGAAATACGTGTTACAAATAGAAATTGTAAGTATAGTATCTAGTATAGACAATTATTCTAATCTAAATGTGTGTGCTAAACAGGAGGAGgaaattattattcaaatagAAGAAACTGGTAATGATTCGGACTCTCAATTCAGCCCTTCATCTGTTGATGAATCAGTTCTAAGGAAACGGGCACATAGCAAACGATATCGTGATAAAACAGCATTTTGCAAGATCTGTGGAaaagtaaaaagaaattttactaGACATCTCAAAATTCACGgaagttttgcttgtaatatATGTCCTTCAAGATATAAAACTAACGATGAACTTACCGAACATCAGGAAATTCACAGAAATAAATCCCAGTATGAGTGCGACGTTTGCCATATGCCCTTCGTAAGTTTATTGTTGCTTGCCTATCATGGATACAGTCATGCACAAAAATATACGTGTCCAATATGTCCAAATTTCGAAGGTGGGAGAACAGCCATTCGAACCCACATAGCCCGCCATGAAGACAAATATAACTACCGATGTGACGTTTGCAATAAAGGTTTTTTGGGTTTAGCTAAATTTAAACATCACCAAGAGATGCATGAAGGTGTACCCAAATACAAATGCCCCATTTGCCAAAAGAGGTTTACCGTAAAGAACTACCTAAAGATCCATATGGGCTACAATCATAAAAAAGAAATGTACGGTGCTGAAGAAACGATAAAATTGACCATCAAACAGGAAGAAATATTTCTAGAAGCCGACGATGAACCTAGAAAGACCAAAAGAACTAGAAGAAGAAGATTGCCAATTAAAAAAACGAAAAGAGACCCCGAATGGAAACTCCAGCTGAACAAGAAACCTAAAATCGAGCCAAAAGATCGAAAAATTCGAGTAaagaaggaaaaaaaattttccccGCCGAAACTTCCCAGAAATCAAAAAGCCAATATGTGGACCTGTAAGTTTTGTTTCGATACGTTCGCTTCAAGAAAAGAAATGTTCGAGCACAGAAAAGAACATCTCGGAGAAGATAAACGTGGCCAAGGTgaagttttaaaatatactttcgACGAAGCGCACGAAATATATATTTGTACCAATTGCTCCGCGGAATGTCAAGACCTTGATGAAATCGAGAAACATATAGAAACTCACGAGGAAAAGTTCAGTTGTTATGTATGTAAGGAAGATCTTTTTGGACCCATGAACTACTCAGTGCATGTGCAAAAGCATCGAGACGACAAATTATTCCCGTGCCCTTGGTGTCAATACATGTCCCAGAAAAAGGAAGCCATGCAAGTCCATATTAATCGACTGCATCTCCAGATCTACGATTTCCAATGTACCAAGTGCGGAAAATGCTTTAACGACGCGTTAAGCTTCAAAGAACACGACAATGTTCATTTAAACTTGAAACCTTTTGGTTGCGTGGTTTGTAGCAAAAATTTTTACTATTCCAGATATCTACTCTCACACCAAATGCGCACCCATACTGTTAGAGTATTAGATCCGGAGTCAAAGACTCAATGTAACATATGCCAAAAGATTTTTGCAAGACTTGATACTTTGGAGAAGCATTATGCTGCTAAACATTTGACCGTACGCACCGGTCCTTACGAGAAAAAGCATCTCTGTGATGTGTGTGGTCAAGGTTTTTCCAGACCCGATAAGCTTAAAATTCACTATAGAAAACACACTGGGGAAAAGCCTTATTCCTGTGTTTACTGCAGCAAGAGTTTTATCAAGCGAGATTATTTAATTATGCATGAACGTATACATTCGGGAGAGAAACCTTACAGTTGCGAAATTTGCGGAAAATGTTTCAATCAAGGAGCACCTTTAAGGATCCATTTACGGAGCCATACAGGAGAACGACCTTATATATGTCCCTATTGTGGTAGTGGATGCGTTTCAAGGGGAGCTCTTAATAGCCATATTAAGAGCTGCATAAATACTGCCCAAACAGCCTTTGATCTTCTACTACAGCTTGACTCAAACCCAGAACCATATGGCACGTCGACTATCAATGTATTAGATGATTCTTCGAACAATCAGAGAATAAAGAACCCAAGCCAAGTGGCAAAAGAGAAGCGCGCCTTAGATTTAGAGTACTATTACAGCCCAGACGGGAAAAAGATATTGCCCAAAAAACAAATCGGACCTCGTTGCAATTCAGAAATTTGTAAAACTCTCCTTAAACAGTGCCTGGAAATCACCGAAAATGATCGCcaagatatttttaattatttttacaatctaGTAAATCGTCACGCGCAATGGGAATTCGTCATTACCTACACACATATTACGGATATTAAAAGAACGAGAGTCAAATCTACCAGGAAGAAGCATACGATGATTTATACGCTTCCCGTTGGAGGAAAGGTACTAAGGGTATGcctaaaaatgttcaaaaatacacTGGATATTTCGCAGAAAGTAATTGGTACCGCGTGGCAAAAAGTCAACGACCAAGGCGTTCTGGAGCAGGATCGAAGAGGACAAAACTGCAAAGAAAAACTAGTactgataaaaataaatgtcaatAAGTACTTGGACGACTATTTGAGGGAACACTTTGATCCAAAAAATCCCATGAGTGTCGCGTACCGAGCTTATTTGGAGGAAATGGGAAAAAGAGACATTGAAGAAGTTGCAagtttatttacatttaaaaagatttttaaggAGAGGGTTGCTGAAATGCGAATAAGGGAAAGTttgtaa
- Protein Sequence
- MKYVLQIEIVSIVSSIDNYSNLNVCAKQEEEIIIQIEETGNDSDSQFSPSSVDESVLRKRAHSKRYRDKTAFCKICGKVKRNFTRHLKIHGSFACNICPSRYKTNDELTEHQEIHRNKSQYECDVCHMPFVSLLLLAYHGYSHAQKYTCPICPNFEGGRTAIRTHIARHEDKYNYRCDVCNKGFLGLAKFKHHQEMHEGVPKYKCPICQKRFTVKNYLKIHMGYNHKKEMYGAEETIKLTIKQEEIFLEADDEPRKTKRTRRRRLPIKKTKRDPEWKLQLNKKPKIEPKDRKIRVKKEKKFSPPKLPRNQKANMWTCKFCFDTFASRKEMFEHRKEHLGEDKRGQGEVLKYTFDEAHEIYICTNCSAECQDLDEIEKHIETHEEKFSCYVCKEDLFGPMNYSVHVQKHRDDKLFPCPWCQYMSQKKEAMQVHINRLHLQIYDFQCTKCGKCFNDALSFKEHDNVHLNLKPFGCVVCSKNFYYSRYLLSHQMRTHTVRVLDPESKTQCNICQKIFARLDTLEKHYAAKHLTVRTGPYEKKHLCDVCGQGFSRPDKLKIHYRKHTGEKPYSCVYCSKSFIKRDYLIMHERIHSGEKPYSCEICGKCFNQGAPLRIHLRSHTGERPYICPYCGSGCVSRGALNSHIKSCINTAQTAFDLLLQLDSNPEPYGTSTINVLDDSSNNQRIKNPSQVAKEKRALDLEYYYSPDGKKILPKKQIGPRCNSEICKTLLKQCLEITENDRQDIFNYFYNLVNRHAQWEFVITYTHITDIKRTRVKSTRKKHTMIYTLPVGGKVLRVCLKMFKNTLDISQKVIGTAWQKVNDQGVLEQDRRGQNCKEKLVLIKINVNKYLDDYLREHFDPKNPMSVAYRAYLEEMGKRDIEEVASLFTFKKIFKERVAEMRIRESL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -