Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018380.1:12627913-12628935[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.48 90 5.9 0.2 1 19 25 43 25 43 0.94

2 10 1.2e-07 2.3e-05 26.7 1.0 1 23 78 101 78 101 0.97

3 10 0.0029 0.54 12.9 0.5 2 23 105 127 104 127 0.93

4 10 0.035 6.6 9.5 0.1 1 23 134 157 134 157 0.93

5 10 0.0019 0.36 13.5 3.2 1 23 163 186 163 186 0.94

6 10 1.8e-05 0.0034 19.9 0.7 3 23 195 218 193 218 0.87

7 10 0.00015 0.027 17.0 2.9 2 23 226 247 225 247 0.94

8 10 5.1e-07 9.5e-05 24.7 0.8 1 23 254 276 254 276 0.99

9 10 4.7e-07 8.7e-05 24.9 0.1 1 23 282 304 282 304 0.97

10 10 0.00024 0.044 16.4 2.4 1 23 310 332 310 333 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.48	90	5.9	0.2	1	19	25	43	25	43	0.94
2	10	1.2e-07	2.3e-05	26.7	1.0	1	23	78	101	78	101	0.97
3	10	0.0029	0.54	12.9	0.5	2	23	105	127	104	127	0.93
4	10	0.035	6.6	9.5	0.1	1	23	134	157	134	157	0.93
5	10	0.0019	0.36	13.5	3.2	1	23	163	186	163	186	0.94
6	10	1.8e-05	0.0034	19.9	0.7	3	23	195	218	193	218	0.87
7	10	0.00015	0.027	17.0	2.9	2	23	226	247	225	247	0.94
8	10	5.1e-07	9.5e-05	24.7	0.8	1	23	254	276	254	276	0.99
9	10	4.7e-07	8.7e-05	24.9	0.1	1	23	282	304	282	304	0.97
10	10	0.00024	0.044	16.4	2.4	1	23	310	332	310	333	0.95

Sequence Information

Coding Sequence: ATGATCTGGAGATTTTCTGGCTgctttattgtattttattttagccCTAAGAAAAACCAAACTGAGATAACATATCAATGTACCCAGTGTACCCTGGTTGTTAATACGTATGAAAAATTTGTTGCCCATGACACAAACGAGTGTTGTATTCAAAAAGGAATTTCAACTAAATATCTCAACGGCATATATTGGCCTATTGTTGTCAAAAGGGAAAACGAAGACCAAAAATCCTATTCTTGTCCAAAATGTAATAAATCCTTTTCGTCCCGTAAGAACCTGACCGGTCATATAAACTCAGTTCATTCGAAAATTTCTTGCCCTGAGTGTACGAAAACGTTTCATAGACCGAGGATACTACAGGACCACCTAGATTCAGTTCATAGAGGCATCGTTAAACTCTTCTTATGTGAGATTTGTGGTAAAAATCTTGGTAGCAAGGAAGGCGTCGAAATGCACAAACAAAGAATTCAtctgaaaaaatttaagtttttctgTGACGTCTGCAATAAAGGATTTTGCTTTAACAGTGAAGtaaaacaacataaaaaagAGGTGCATGAAGAACATGACACTATTATTCCTTGCACCCAAGACGGATGTAACAAAACGTTTAAACGCAAAAGCAATTTGAAATATCACGTAGACGCCAAACATACTCAAGAGAAACCTGTTTTAAATTGTGAACAATGTGGAAAAACCTTTGACCATCCGTTCCTTTTTAAGAAGCATCTATCGTTTCATAAAAAGGGACGTTCCATCTATGAATGTGACATTTGTGAAAAAACCGTGTTCTCTAAATCTAGTTTGAGAGATCATATGCGCACGCACACTGGAGAAAAACCTTTTGTTTGCGAACAGTGCGGAATGAGATTCACGCGAAGAGACGCCTTGAAGGCTCACATGGTTGTTCACacaaagaaaaaaccttttgcttgtaaattttgtgaaaaaagatATACTCAACGAGGTCCACTGAGTCTGCATATGCGTCTGCATCATTCTGgaaaaaaaattagcgattag
Protein Sequence: MIWRFSGCFIVFYFSPKKNQTEITYQCTQCTLVVNTYEKFVAHDTNECCIQKGISTKYLNGIYWPIVVKRENEDQKSYSCPKCNKSFSSRKNLTGHINSVHSKISCPECTKTFHRPRILQDHLDSVHRGIVKLFLCEICGKNLGSKEGVEMHKQRIHLKKFKFFCDVCNKGFCFNSEVKQHKKEVHEEHDTIIPCTQDGCNKTFKRKSNLKYHVDAKHTQEKPVLNCEQCGKTFDHPFLFKKHLSFHKKGRSIYECDICEKTVFSKSSLRDHMRTHTGEKPFVCEQCGMRFTRRDALKAHMVVHTKKKPFACKFCEKRYTQRGPLSLHMRLHHSGKKISD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01241134;
90% Identity: -
80% Identity: -