Ppte076066.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018385.1:43466421-43468040[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.6e-06 0.00068 22.1 2.4 1 23 97 120 97 120 0.97 2 10 2.1e-06 0.00039 22.8 2.1 1 23 200 223 200 223 0.98 3 10 0.0001 0.019 17.5 2.3 1 23 229 251 229 251 0.98 4 10 0.0035 0.64 12.7 3.0 1 23 257 279 257 279 0.98 5 10 0.0003 0.056 16.0 1.7 1 23 285 308 285 308 0.95 6 10 0.00014 0.026 17.1 0.3 1 23 316 338 316 338 0.99 7 10 1.2e-05 0.0021 20.5 3.9 1 23 344 366 344 366 0.96 8 10 0.00087 0.16 14.6 0.8 1 23 372 396 372 396 0.97 9 10 6.4e-06 0.0012 21.3 3.0 1 23 410 432 410 432 0.96 10 10 1.2e-05 0.0022 20.5 4.1 1 23 438 461 438 461 0.98
Sequence Information
- Coding Sequence
- ATGGACAACAGTACAAATTTTTGCTGTATCTGCATAGAAACACATGAAAGCTTGAAAAGCGTAACCGATATAGATGAGAATAATGTACAATTATGCGAGAAATTGACCGCATGTGAACCAAATCAGAACTGGGATGATAACACCTTATACCTATGTGAGTCTTGTACAGATAAACTAAATGAGGCCTATGAATTCATTAATTCATGCAAGGAAAGCGAGACTTTAAGAGCAGAGAAATTACTTCAATTGCAAGAagaaattgaaagaaaaaatattgaaagtcaGACGTTTACTTGCGATATATGCCAGAAATCTTTTAAACGGAAGAGGTTTCTGAAAGTGCACATTACGAGGATACATTTAAAGAATTCTAGAGGGAAAAAAAAAGgtagAACAGAAGAAAAGGAAAATGGACACACATCTGATCCAAATATTCCTAGCTGTATCAACGAAGAAatgattaaaaatgaaataaaagatgATATATCTGATGATGACTTTCTTGCAACAAATAATGACGGTAATTATTCTACTGACGAAGAAGTTACAGAAAAACCACGCAGACAACGAAGaacacaaaaatttaaacaagaaTCTTTCACTTGTGAATATTGTGGCAAGCAATTTAACCGAAATCAACATTGGGCTGCGCATATACGATCAAAGCATACATTTGAAAAACCTTATAAATGTAAACTTTGTGAGGCTAGCTTTGTTACATCACACAGTCTGCTTGTCCACAAACGTAATCACAACAATGAGAGACCTTACATTTGTAGTACTTGCGGTAAAGGCTTTGTTTGTTCAGGAGATCTGTTCCACCACACCAAAATACATTTAAACAAAAAGGAATACCaatgtaatatttgtaataaaaggTTCAACACAACAAGTATATTGAGAACTCACAAGATCGTAAAGCATACTGAGCCCAAAGACTGGAAATATGTATGCTCGCTTTGTGAAAGGAGGTTTCCCATTAACAGTGGATTATCACTGCATATGAAAAGACATATAGGAGTTAAAGATCATGCATGCCATATTTGtggaaagaaattttttaataaatctgaAGTGACAAAACATATTTTGTCCCACTCGAATCAAAAACACTTTAAATGCACTTACTGTGAAGTTAAAGAGTATAAAAACCGAGAGGGActcaataaacatttaaaaattgttcatGACGTGGGTAATTGGAAAGCCCCTCAGCTAGAGAAAAAATTCCTGTGTCCCCATTGCccaaaaatgtttacttttaatAATAAGTTGCAGAGGCATCTTTTAACCCATTCCGGAGAGAAACCTTTTAAGTGTGAATACTGTGAAAAAAAGTTTAGTGATAATTATTACAGAAAAAGTCATATGAGGAAAGAACATAATGTCCAATCTGAGGATGAGATTAAGTATGTCGAGTTGGTGGCAGTGCCGCCAGAAAATTTTGTCCCACTTGAATCAAAAACACTTTAA
- Protein Sequence
- MDNSTNFCCICIETHESLKSVTDIDENNVQLCEKLTACEPNQNWDDNTLYLCESCTDKLNEAYEFINSCKESETLRAEKLLQLQEEIERKNIESQTFTCDICQKSFKRKRFLKVHITRIHLKNSRGKKKGRTEEKENGHTSDPNIPSCINEEMIKNEIKDDISDDDFLATNNDGNYSTDEEVTEKPRRQRRTQKFKQESFTCEYCGKQFNRNQHWAAHIRSKHTFEKPYKCKLCEASFVTSHSLLVHKRNHNNERPYICSTCGKGFVCSGDLFHHTKIHLNKKEYQCNICNKRFNTTSILRTHKIVKHTEPKDWKYVCSLCERRFPINSGLSLHMKRHIGVKDHACHICGKKFFNKSEVTKHILSHSNQKHFKCTYCEVKEYKNREGLNKHLKIVHDVGNWKAPQLEKKFLCPHCPKMFTFNNKLQRHLLTHSGEKPFKCEYCEKKFSDNYYRKSHMRKEHNVQSEDEIKYVELVAVPPENFVPLESKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196607;
- 90% Identity
- -
- 80% Identity
- -