Ppte051084.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- RREB1
- Assembly
- GCA_963969555.1
- Location
- OZ018380.1:12605284-12611019[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.3 9.8e+02 2.7 0.1 1 21 16 36 16 37 0.94 2 22 5.2e-06 0.00098 21.6 0.6 1 23 67 90 67 90 0.95 3 22 0.0022 0.4 13.3 0.5 2 23 97 119 96 119 0.90 4 22 0.00065 0.12 15.0 0.6 2 23 127 149 126 149 0.89 5 22 0.013 2.4 10.9 1.1 2 23 156 178 155 178 0.96 6 22 0.0025 0.46 13.2 1.4 3 23 187 210 185 210 0.90 7 22 4.8e-05 0.009 18.5 2.8 1 23 217 239 217 239 0.94 8 22 8.6e-06 0.0016 20.9 0.9 1 23 246 268 246 268 0.99 9 22 1.6e-05 0.0029 20.1 0.2 1 23 274 296 274 296 0.97 10 22 0.0002 0.038 16.6 4.1 1 23 302 325 302 325 0.97 11 22 0.041 7.6 9.3 0.1 2 22 376 396 375 396 0.94 12 22 0.068 13 8.6 2.5 1 23 406 428 406 428 0.93 13 22 0.00031 0.058 16.0 1.5 1 23 435 458 435 458 0.96 14 22 0.0003 0.055 16.0 6.3 1 23 627 649 627 650 0.95 15 22 6.5 1.2e+03 2.4 0.1 2 10 762 770 761 773 0.87 16 22 0.052 9.6 9.0 2.0 2 23 779 801 778 801 0.94 17 22 0.00038 0.07 15.7 1.2 2 23 836 858 835 858 0.94 18 22 0.36 68 6.3 0.2 1 23 866 891 866 891 0.94 19 22 0.0028 0.51 13.0 2.7 2 23 899 920 899 920 0.97 20 22 1.9e-05 0.0036 19.8 1.2 1 23 929 951 929 951 0.97 21 22 0.0095 1.8 11.3 1.5 1 23 957 979 957 979 0.92 22 22 5.5e-05 0.01 18.4 1.1 1 23 985 1008 985 1008 0.97
Sequence Information
- Coding Sequence
- ATGCTTAAAAAGCTGAAgcttaaaCAAGaccaaacatttgtaacttataAGTGTGTTCAGTGCGCCGTAGTAGTGGAcacatataaaaaattaatcgtTCATGAAAGGTACTGCTGTGAGAAGTATAATAAAGTAGCAAGACACCCTCGAAGTGAAAACTCCCTTGTCAAAAACGAGACCGACAAGAAACGTACAGGATTTCCCTGTCCAGAATGTGGAAAATCGTATGCCAAAAAGAGCTatttaaattcacataaaaatTATGTTCACAAAAGAACGCTGATGACTTCTTGTGCGGAATGTGGGAAATCATTTACTAATAAATGGATTCTAAATAAACACTTTGATTCAGTTCACCGAGGAATCATTAAATATTGTGAATGCGATATCTGTGGTGAAAAGTTTACACAGAGAAATGGTTTGCTACAGCACAGGGATGccatccatttgaaaaaatttaacatgtaTTGCAATGTCTGCAACAAAGGATTTCTTTATGTAAGCCAATTAAATAAACACAAGAAGAAGGTTCATGATCGTGATATCGAGATTATTGCTTGCACACACGAAGAATGTAAGAAAACTTTCAGATCCACTAGCAGTTTAAAATACCACTTAAGCGCCGACCATACGACAGAGAAACCCAATTTTTTGTGTGGCCAGTGTGGGAAGACGTTTAATCATCCTGGTTTGTTCAAGAAACACCTCCGGTTCCACAAAAGAGAACATTTTCTATACAAGTGTAATCTTTGCGAGAAAACTGTCACGTCCAAAGCTAGCTTCGAATCCCACATGCGTATTCACACAGGGGAAAAACCGTTCGTATGTGAGCAGTGCGGATTGGGTTTTAAGCAACGAGGCAGTTTAAGAAGTCATATGGTTGTTCATACTAAGGAAAAACCGTTCACTTGTAAATTTTGTGATAAGAAATATACTCAACAAGGTCCTCTTACTCAACATATTCGACAATGTCACCCAGACGTGGTAAAGAAAGTTGGAAATCAAATAACAGTTCATGAATTGGATGGAAAGAGGCTGCTGGATTCTGGAATAAAGAACGATAATCTTAATAAAGAACAGTTAACTTCCCTggaAACAGCGATAGATGCCTTTAATTCAATGTTGATATGCGAGCTGTGTTCACTTGTTTCTACGTCACGGAAATCCTTGATTGATCATATGAAGACGTGTCCGATACAAGGCAGAAATAATTTATATCATTGTATCGTTTGTTCTTACGATTTTACTGAAAAAGCTCAGTTTAGTCGACATATTCGTTACcataaagaaaagttatttcGCTATAAATGCGATCAATGCTATAAGAGCTTTCGGCGCAAGGGTCTTGTCCTTCAACATCTTGCCAGTAAGCACAGGTATGTTGCCGAGAATATTACGCAGAATGGATATGATATAAAAGTTTCCCTTTATGATAATCCAAAAGACATTCATACCTCGATAGAAGACACCGACACTTTCAGGAGGAGCAACGATGTTGTAGGtaataaagaaaaagcagttCATGGGAAAAATCTTCCTTCAGTGACAAATAACGAGAACAACGGCCTTAACCATAATAACGACCTTAGCGACCAGTTAGAGGATGCTCCTATGGGTCTTATAGCTGCAAGTATTCCTGTTGAACCAAATGAAGTTATTCCTACTTGtgaaaaagtatttaccgaagaAAACAAGAATAACGACCATCCAAAAGAGGATCATGTAGATCAAGCCAGTGGTTTTGAAAATACAATCCGCATTATGAAAGTTGTTGCTGGTGCAGATTGTGAAATGCTTTTGCACGATAGAAGCAGCTTTAATGCTCGTTCGATTGATGATGATGGtaattctaaaaaagcttatatcGACAGGGAAgttttccattgtcctgattgCAATCaacgtttttacaaaaaaaaattcctcaACGAGCATATGAGAATCCATCATTTTGACGGCACAAATGTTCCTTTTTCAAATAATTACCAAGACATCTTTCTCCAAAGAATAATCGACATTACCGATCACGTCAGAGATACCCATAAATCTGTTGcaagtatttctgaaaaaatttgcgaagtcgaaaaaggtttttcttgCGAGAAAAATAGCTTTAACGACTGTATTAGATTTGAACATAAAAACACCATTAGCAATGTTGATGGCACAAGTGAAGTTGAAGATACAAATGAAATGATAAAACACTTTCCTTGTCCCTGTGGTAATtgcgaaaagaaaaaaaacagtgtACCCATTCCTGAATATACAGGTACAGGGCTTTTGAAATGTCCGGACTGTGAACAAATATTTGGTAGTATAAATGACGAAGCGATTACTTGTAAAGAATGTGAACAAGTATTTAAGACATACTGTATTTTGAATAAGCACATTAGCAATATGCACAAAgtaatggaaaatgttaaagaGTGCGCCGTTTGTGGCATGAACTATAAAGGTTCGTTGGAAGATCACAATAACTTGTTACACCGTGAACCTTTTTGTACATCTTGTACGATTTGCCACAAAGGATTTTATGCTCTGGAAAATTTGCAGAAACACATGGTTAAAGACCATAAAGTACGTGAGAAAATCCGTTTTCCGTGCACGGAAGACGGGTGcgtaaaattatttaccaacagAAACGCCTTTTTGTACCACTTAGGTACAGTACACTTAAAGGCGAAATTTAAGGCTTCCTGTGAAGATTGTGGAAAGGTATTGACGCATCCCAACAAATATATGAACCATGTTAGACATCACAAGAAATACGCATCTTCGGAAACCCATCCGTGTAACATCTGTGACAAAAGATTGTCTTCAAAAAGCAGTTTACAAGATCACTTGCTCTCTCATAGCGGCGAAAGACCTTATATCTGTGAGATATGCGGAAAgagatttatttgtttaaaacatcTTAAGGTTCACGGGGTGGTGCATACGAAAGAGAAACCATATCCATGTAAATATTGCGATAAAAGATATACCCAGCGAGCTCCGGTCTCTCGGCATATGCGCCTTCGTCATCCTGAGATGGTGAAAAAAACCAAccgacaaaaactaaaaaaagttgataagaaaaataatactGATGATAATACGGAAAATAAAGATGTCGATAATGTGGAAACATAA
- Protein Sequence
- MLKKLKLKQDQTFVTYKCVQCAVVVDTYKKLIVHERYCCEKYNKVARHPRSENSLVKNETDKKRTGFPCPECGKSYAKKSYLNSHKNYVHKRTLMTSCAECGKSFTNKWILNKHFDSVHRGIIKYCECDICGEKFTQRNGLLQHRDAIHLKKFNMYCNVCNKGFLYVSQLNKHKKKVHDRDIEIIACTHEECKKTFRSTSSLKYHLSADHTTEKPNFLCGQCGKTFNHPGLFKKHLRFHKREHFLYKCNLCEKTVTSKASFESHMRIHTGEKPFVCEQCGLGFKQRGSLRSHMVVHTKEKPFTCKFCDKKYTQQGPLTQHIRQCHPDVVKKVGNQITVHELDGKRLLDSGIKNDNLNKEQLTSLETAIDAFNSMLICELCSLVSTSRKSLIDHMKTCPIQGRNNLYHCIVCSYDFTEKAQFSRHIRYHKEKLFRYKCDQCYKSFRRKGLVLQHLASKHRYVAENITQNGYDIKVSLYDNPKDIHTSIEDTDTFRRSNDVVGNKEKAVHGKNLPSVTNNENNGLNHNNDLSDQLEDAPMGLIAASIPVEPNEVIPTCEKVFTEENKNNDHPKEDHVDQASGFENTIRIMKVVAGADCEMLLHDRSSFNARSIDDDGNSKKAYIDREVFHCPDCNQRFYKKKFLNEHMRIHHFDGTNVPFSNNYQDIFLQRIIDITDHVRDTHKSVASISEKICEVEKGFSCEKNSFNDCIRFEHKNTISNVDGTSEVEDTNEMIKHFPCPCGNCEKKKNSVPIPEYTGTGLLKCPDCEQIFGSINDEAITCKECEQVFKTYCILNKHISNMHKVMENVKECAVCGMNYKGSLEDHNNLLHREPFCTSCTICHKGFYALENLQKHMVKDHKVREKIRFPCTEDGCVKLFTNRNAFLYHLGTVHLKAKFKASCEDCGKVLTHPNKYMNHVRHHKKYASSETHPCNICDKRLSSKSSLQDHLLSHSGERPYICEICGKRFICLKHLKVHGVVHTKEKPYPCKYCDKRYTQRAPVSRHMRLRHPEMVKKTNRQKLKKVDKKNNTDDNTENKDVDNVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -