Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018380.1:12340176-12342449[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.79 1.5e+02 5.3 0.3 3 14 56 67 55 73 0.84

2 17 0.028 5.3 9.8 0.9 1 23 76 98 76 98 0.97

3 17 0.00079 0.15 14.7 0.6 1 23 104 126 104 126 0.96

4 17 0.021 3.9 10.2 0.2 1 23 130 154 130 154 0.95

5 17 2.1e-05 0.0039 19.7 0.5 2 23 161 182 160 182 0.97

6 17 8.2e-06 0.0015 20.9 2.0 1 23 188 211 188 211 0.97

7 17 0.00012 0.023 17.3 1.8 1 23 222 245 222 245 0.93

8 17 3.6e-05 0.0066 18.9 0.9 2 23 254 275 253 275 0.97

9 17 7.5e-07 0.00014 24.2 2.3 1 23 281 303 281 303 0.98

10 17 2e-05 0.0037 19.8 1.7 2 23 366 387 365 387 0.96

11 17 0.011 2 11.1 0.3 1 23 393 415 393 415 0.93

12 17 3.5 6.5e+02 3.2 0.3 1 23 419 441 419 441 0.82

13 17 0.011 2.1 11.1 0.1 1 23 447 469 447 469 0.97

14 17 2.2e-05 0.0041 19.6 0.7 1 23 475 498 475 498 0.92

15 17 7e-06 0.0013 21.2 1.5 1 23 509 532 509 532 0.93

16 17 4.9e-06 0.00091 21.7 1.2 2 23 541 562 540 562 0.98

17 17 0.00047 0.088 15.4 0.4 1 21 568 588 568 589 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.79	1.5e+02	5.3	0.3	3	14	56	67	55	73	0.84
2	17	0.028	5.3	9.8	0.9	1	23	76	98	76	98	0.97
3	17	0.00079	0.15	14.7	0.6	1	23	104	126	104	126	0.96
4	17	0.021	3.9	10.2	0.2	1	23	130	154	130	154	0.95
5	17	2.1e-05	0.0039	19.7	0.5	2	23	161	182	160	182	0.97
6	17	8.2e-06	0.0015	20.9	2.0	1	23	188	211	188	211	0.97
7	17	0.00012	0.023	17.3	1.8	1	23	222	245	222	245	0.93
8	17	3.6e-05	0.0066	18.9	0.9	2	23	254	275	253	275	0.97
9	17	7.5e-07	0.00014	24.2	2.3	1	23	281	303	281	303	0.98
10	17	2e-05	0.0037	19.8	1.7	2	23	366	387	365	387	0.96
11	17	0.011	2	11.1	0.3	1	23	393	415	393	415	0.93
12	17	3.5	6.5e+02	3.2	0.3	1	23	419	441	419	441	0.82
13	17	0.011	2.1	11.1	0.1	1	23	447	469	447	469	0.97
14	17	2.2e-05	0.0041	19.6	0.7	1	23	475	498	475	498	0.92
15	17	7e-06	0.0013	21.2	1.5	1	23	509	532	509	532	0.93
16	17	4.9e-06	0.00091	21.7	1.2	2	23	541	562	540	562	0.98
17	17	0.00047	0.088	15.4	0.4	1	21	568	588	568	589	0.95

Sequence Information

Coding Sequence: ATGCATGAAGTCAAACCAAAGAACAATCGGCTCGGAACTAATATTCGAATACTATCCGACACTGTTATTCCAAGGATTGCCACGGGTATTCAACGATCCCTTACCAATAATATCACTCAAATTAAGCCAGAACCACGCAGATCTGATAACAAGAGGGAAGTATTATGCACAATTTGCGGTAAAATGGTCAAAAACTACAGTCAACATGTAAAAAATCATGGAAACTACATATGCTCCCATTGTATGGGAAACTTTAAAACAGAACGTCAACTTGAAATCCACCAAGAAATTCATGTCGTTGCCACTCAATATGATTGTGATACTTGTCAAATGACGTTTAAAACTCTGGCGCAGCTAGCAATTCACAAATATAGTCATACCAATCAGTATGTATGTCCTGTATGTGGATTTCAGGCTTTAACTAAAAACGCTAGCTCACTTAAAGCCCATATTTTAAGGCACGAAGAAAAATATCCTGTTAGATGTAAGTATTGCAACAAAGGATTTTTTTCTCCTTCGAAACTCCAGGACCACCTAGAGGTCCACCAGGGCTTTCCTAAATACGAGTGCGAAATATGCCACAAGAAGTTTACTGTTAAGGCCTACCTAAAGATTCACATTAACTACAATCATAAAAAGGAAGTGTTTGGCATCGAGGAGAGACACCAATGCGATATCTGTGGCAGGAACTTTTCTTTTGAGAAGAGCTATCGAAGACACTTAAGTGCTATTCACAAGATAGGCAAAGATTATACTGTAGAGTGTCAAATATGTCACAAAATCATTGCCAATAAGACTAATCTGAACAAACACTTGAGAATTCACACGGGAGAGAAGAATTTCGTTTGTGAGACTTGTGGAAagaaattttctcaaaaaaaatacTTGAAAAACCATCAGTCTGTACATTTACGCGAAGCTGGTGTTTTACCgaaaaaacaaaattcagcAAAGGTTTTAAATGTTGAAATTGAAGAAGACCAACCCCATAAGGAATCAATTTTAACTACAGGGCATCGAGCTCAGAGCCAACGATATCCGGACGAAGAAAAGTCATACCCAGTTTgtggagaaataaaaaaacacataaaaatcCATTGTAACAAGTGCCCTCTGAGGTTCAAAACAAAAGAACAGCTCACTGAACATCAGAAAATTCACGAAAGCAAATACCGATATGATTGTACCGTTTGTAAAGAGTCTTTTGCCACATCATTGCTTCTTGCATATCACGGATACAGCCATTCAAAGAAATACGAGTGTCCAATCTGTGAAAACTTCGATGGAGATAGAGATGCTATTAAATCACATATGGCTCGTCATAATGACAATTGTACATACACGTGTGAAATTTGCAGCAAAGGATTCCTGGGTTTGGCTGGTCTTCGACGTCATGTGGAAATGCACGAGGCCATACCCAAATACATGTGTCCCATTTGCCCGAAGAAATTTACCGTTAAAACCTATTTAAAAGTACATTTGGGATATAAACACAAAAAGGAACTGGGCAGTGTTGAAGAAACATACGAATGCAAAATCTGCGACCGaaagtttagttttaaacaAAGCTTGACGAGACATTTAAGTGATGTTCACTGTATTGGTGACGATCGTTCCGTAAAATGCCAggattgtaataaaatatttacaaaccCAGCTAAACTTAAAGAGCATAGGAAAAGACATACGAACGAAAGAAATTTCTCTTGTGAAGCTTGTGGTAAACGGTTCTTTGCAAACTATCTTTTAAACAGACATCAAAGAATCTGCGAAATATTTGATCCGCAAAGACTTTCTGAATAA
Protein Sequence: MHEVKPKNNRLGTNIRILSDTVIPRIATGIQRSLTNNITQIKPEPRRSDNKREVLCTICGKMVKNYSQHVKNHGNYICSHCMGNFKTERQLEIHQEIHVVATQYDCDTCQMTFKTLAQLAIHKYSHTNQYVCPVCGFQALTKNASSLKAHILRHEEKYPVRCKYCNKGFFSPSKLQDHLEVHQGFPKYECEICHKKFTVKAYLKIHINYNHKKEVFGIEERHQCDICGRNFSFEKSYRRHLSAIHKIGKDYTVECQICHKIIANKTNLNKHLRIHTGEKNFVCETCGKKFSQKKYLKNHQSVHLREAGVLPKKQNSAKVLNVEIEEDQPHKESILTTGHRAQSQRYPDEEKSYPVCGEIKKHIKIHCNKCPLRFKTKEQLTEHQKIHESKYRYDCTVCKESFATSLLLAYHGYSHSKKYECPICENFDGDRDAIKSHMARHNDNCTYTCEICSKGFLGLAGLRRHVEMHEAIPKYMCPICPKKFTVKTYLKVHLGYKHKKELGSVEETYECKICDRKFSFKQSLTRHLSDVHCIGDDRSVKCQDCNKIFTNPAKLKEHRKRHTNERNFSCEACGKRFFANYLLNRHQRICEIFDPQRLSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -