Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018376.1:38756710-38784499[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.3e-07 2.4e-05 26.6 1.4 1 23 328 350 328 350 0.99

2 13 1.8e-05 0.0033 19.9 0.3 1 23 356 378 356 378 0.95

3 13 1.7e-05 0.0031 20.0 0.3 1 23 384 406 384 406 0.99

4 13 1e-06 0.00019 23.8 2.3 1 23 412 434 412 434 0.99

5 13 3.8e-06 0.00071 22.0 3.9 1 23 440 462 440 462 0.98

6 13 0.00079 0.15 14.7 4.3 3 22 470 489 468 490 0.91

7 13 4.3e-07 8e-05 25.0 2.2 1 23 513 535 513 535 0.99

8 13 6.9e-06 0.0013 21.2 1.8 1 23 541 563 541 563 0.96

9 13 0.00011 0.021 17.4 0.1 1 23 569 591 569 591 0.97

10 13 1.6e-07 3e-05 26.3 1.5 1 23 597 619 597 619 0.99

11 13 1.1e-05 0.002 20.6 1.5 1 23 625 647 625 647 0.99

12 13 0.0077 1.4 11.6 5.5 1 23 653 675 653 675 0.98

13 13 0.0018 0.33 13.6 5.3 1 23 681 704 681 704 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.3e-07	2.4e-05	26.6	1.4	1	23	328	350	328	350	0.99
2	13	1.8e-05	0.0033	19.9	0.3	1	23	356	378	356	378	0.95
3	13	1.7e-05	0.0031	20.0	0.3	1	23	384	406	384	406	0.99
4	13	1e-06	0.00019	23.8	2.3	1	23	412	434	412	434	0.99
5	13	3.8e-06	0.00071	22.0	3.9	1	23	440	462	440	462	0.98
6	13	0.00079	0.15	14.7	4.3	3	22	470	489	468	490	0.91
7	13	4.3e-07	8e-05	25.0	2.2	1	23	513	535	513	535	0.99
8	13	6.9e-06	0.0013	21.2	1.8	1	23	541	563	541	563	0.96
9	13	0.00011	0.021	17.4	0.1	1	23	569	591	569	591	0.97
10	13	1.6e-07	3e-05	26.3	1.5	1	23	597	619	597	619	0.99
11	13	1.1e-05	0.002	20.6	1.5	1	23	625	647	625	647	0.99
12	13	0.0077	1.4	11.6	5.5	1	23	653	675	653	675	0.98
13	13	0.0018	0.33	13.6	5.3	1	23	681	704	681	704	0.98

Sequence Information

Coding Sequence: ATGACTACAACAGAATACCATCAACCAGTAACATACATCGAAGTTTCTCCACTTTTCGATGTTCGTACTGAAGTTCCTGATGAAACGTCCAATAGAGGTAATTTAACTCCTGAGCAGGTTGTTTTTAACCGAAAACATGCAAGTGGTAGATCAGTGATTGAACGAAGATTTGCTCATTTCTTTGGGAGGTTCCGAAGATTTCGGGACCTTGATATGAACAGACTAGGTTGGATTCCTGGGACTATAATTGCAGGTTGTATCCTAGAACATGATGGCTTACCAGGAAACATTTGCACAAGTTGTGAAAAGCAGATTGCTTCTgtcttaaaatttataaaaacatgtGAAGAATCTAATGTTGCTTTAACTAAATTATCAAAAAGCTTTAGTGTAAAAAAGGAAGAGGAGCTCGAGAAAATAGATGATGTCACATTTGAAACCAAAACAGAAGATGCAGAATtgtatacaaatacaaaatcCAAAGTTCTAAAGAGGGCCTATGTTCCGGATAATCCCGGCGATGTTAGCAGAGAACAGGGCAAACATTTTCATAAGTATATCAACGACATGGAACACATATATCAGGGAAGATGGGACGTTAGTATGATGGCGGATTACTGCTGGTCCTTAAAACGAAATACTTCAATGATCACACACAAAAGGAAACACAAATGctttaaaactgaaaaaaaaaccaATGTAGCTGAAACTCCGGTAGAAGCGCCAAGTGAAGAAGAACAACCGGAGGAAAAGCCTCGTCGAAGGCCTGGCAGGCCTGGTTTGCGTGAACGGAAATCAAGCAACAAAAACGGAATATCTGACTATgTGGATATTGATGATGATATTACTGAAGAAAAAGTGactgtaaaaaaaatcgaaaaagtcGACCAGGTCTCCGATGATAATTATTCAGAACAGggAGATTGTAATGATGGACTCGCTAAAGATTACTCCTCTGATGACGATTTTGCACTCAGTGAATATAAATGCGACATCTGtgggaaaaattttaaatttaaaagttctttGGAAGCTCATCagacaacacactcaaaagagAGGCCCTTCTTGTGCAACATGTGTGGAAAGGGCTACGCCGACAAGTATGGACTGAAGAGTCACTTGCTAACGCATTCAGAAGATAAACCGTATGTATGCAAATTTTGCGGAGCACGCTTTAGGACGCAAGGAGCAGTTCGGGTTCATGTTAGAACGCACACCGGAGAGCGACCATATAAATGTAAACTGTGTACTAAAACTTTTGGTCAAAAGGCTAATTTACAACAGCATGAACGAACTCACACTGGGGAAAAACCATATCCATGTACAATTTGTCCTAAGAGgtttaaCCACAGTGGtaaactaaaaattcatatgAGACACCACAGCGGTGAAAGACCATATGGTTGTACCCACTGTGACAAATGTTTCGCAACTAAAGAAACAATGAAAAAGCACATCTGGACACATACAGGAGAGCGACCGCCTAATTATAAGccaAAACCAAAAGTGGACACCAGTCACATTCTTCCCAGATATGAATGTGAAGTGTGCCATAAAAAGTTCAAGTTCCCCGCCAACCTGAAAGCTCATCTGCGTAGACACACCAACGAGAAACCTTACCTGTGCAGTACTTGTGGAAAGTCGTTTTCGGAAAAACATGGACTAACAGTTCATTTAAACACTCATACAGgaGAAAAGCCGTTTGCCTGTACGTTATGTGGTATTAAATTCACAGCACCCAACGGTCTTAGAGTGCATTTAAGACGTCACACAGGAGAAAAACCATACAAATGTGAAATTTGCAATAAGAGTTTCTTCCAACCAAGTAACCTAATTAGTCACAAGCGTTCACACACCGGAGAGAAGCCATATGAATGTACCCTATGCTCAAAGAGGTTTTCCGCTagcaacaaattaaaaattcacaTGCGCATGCACAGCGGCGAAAAACCATACCAGTGTCCACATTGCAACGAAAGTTTTGGACGTAAAGATGTCTTAAAGTGTCATTTCAGGAGACACACTGGCGAGAAGCCTTTCACTTGCAAAATATGTCTCCAATCGTATTCACATAGTGGAACGTTACATACTCATCTAAAAACTCAACATAGAATGAAAGGTCACGATATGTCAGCATATgaattttaa
Protein Sequence: MTTTEYHQPVTYIEVSPLFDVRTEVPDETSNRGNLTPEQVVFNRKHASGRSVIERRFAHFFGRFRRFRDLDMNRLGWIPGTIIAGCILEHDGLPGNICTSCEKQIASVLKFIKTCEESNVALTKLSKSFSVKKEEELEKIDDVTFETKTEDAELYTNTKSKVLKRAYVPDNPGDVSREQGKHFHKYINDMEHIYQGRWDVSMMADYCWSLKRNTSMITHKRKHKCFKTEKKTNVAETPVEAPSEEEQPEEKPRRRPGRPGLRERKSSNKNGISDYVDIDDDITEEKVTVKKIEKVDQVSDDNYSEQGDCNDGLAKDYSSDDDFALSEYKCDICGKNFKFKSSLEAHQTTHSKERPFLCNMCGKGYADKYGLKSHLLTHSEDKPYVCKFCGARFRTQGAVRVHVRTHTGERPYKCKLCTKTFGQKANLQQHERTHTGEKPYPCTICPKRFNHSGKLKIHMRHHSGERPYGCTHCDKCFATKETMKKHIWTHTGERPPNYKPKPKVDTSHILPRYECEVCHKKFKFPANLKAHLRRHTNEKPYLCSTCGKSFSEKHGLTVHLNTHTGEKPFACTLCGIKFTAPNGLRVHLRRHTGEKPYKCEICNKSFFQPSNLISHKRSHTGEKPYECTLCSKRFSASNKLKIHMRMHSGEKPYQCPHCNESFGRKDVLKCHFRRHTGEKPFTCKICLQSYSHSGTLHTHLKTQHRMKGHDMSAYEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -