Ppte051045.2
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018380.1:12371378-12380530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0029 0.53 12.9 1.4 1 23 12 34 12 34 0.89 2 17 0.00011 0.021 17.4 3.6 1 23 40 63 40 63 0.98 3 17 0.00026 0.049 16.2 5.5 1 23 75 97 75 98 0.95 4 17 0.0021 0.39 13.4 1.0 3 23 109 129 108 129 0.98 5 17 6.6e-07 0.00012 24.4 0.7 1 23 135 157 135 157 0.97 6 17 2.5e-06 0.00046 22.6 0.8 1 23 163 185 163 185 0.98 7 17 0.017 3.1 10.5 0.1 1 21 191 211 191 212 0.94 8 17 0.0017 0.32 13.7 0.2 2 23 304 325 303 325 0.96 9 17 0.6 1.1e+02 5.6 4.0 1 23 331 353 331 353 0.97 10 17 0.0008 0.15 14.7 0.6 1 23 359 381 359 381 0.91 11 17 9.6e-05 0.018 17.6 3.4 1 23 387 410 387 410 0.98 12 17 9.1e-05 0.017 17.7 3.4 1 23 422 445 422 445 0.94 13 17 0.011 2 11.2 0.9 3 23 456 476 455 476 0.98 14 17 1.9e-06 0.00035 23.0 0.2 1 23 482 504 482 504 0.97 15 17 1.1e-07 2e-05 26.9 1.3 1 23 510 532 510 532 0.98 16 17 0.00018 0.034 16.7 0.1 1 21 538 558 538 559 0.96 17 17 0.00022 0.041 16.4 0.1 1 23 587 609 587 609 0.97
Sequence Information
- Coding Sequence
- ATGCACGTCAGAGCTCATGAAGGTACCACCAAGTACAAATGCGATATTTGCGGAAAAGCGTTTACTATCAGTACCCATGCTATTGAGCATAAGTATTTTCATACTGGCGAAAAACCTTTTCAATGCGAAATTTGTGGAAAGCATTTTATGTTCTCGTGGTTTTTGACGTCGCACAGAAGGACTCAGCATTGGGAGATTGTCACTGGAAGTCCTTTGGTGAAATACGATTGTAATGAGTGTAACAAGCATTATACTTCCTCTACTGGTCTTAAACGACACAATATGACTCACCACGGCTCGCCAGGAGTCGATCACTCAGTCTTATGCGACATATGCGGTAAAAGTCTTTCCTCCAAAGAAAAACTCAAATTCCACCGTCGAATTCACACAGGATACAAACCGTTTGCCTGCGAAATATGTACGAAAAGTTTTTCGCGAAAAGAGCAACTCAAGGAGCACGAAAGAGTTCATACCGGGGAAAAACCGTACATTTGCAAGTTTTGTGGAAAAGGTTTTACACAGAGGTCGCCACTGAGAATTCATGAACGTACCCATACTGGAGAACGACCTTACACTTGCATGATATGTCAGAAGGGGTTTATCTCGAAAGGAGTTATGGATACTCATATGAAAAGTTGTTCAGCGGCTAGACATGCGCCTCAAAGGAGAaggcgaaaaagcaaaaaaactaGACAATCGAAACAAGATGACGATCcagattttgaaataaaaataaaagttgaaaAAGATGACGGGAACAATGAAGCGATAGCTGGCGAAGgtataaaaaaacctaaaagagGTAGAAAAAAAGGATCGAAGAAAGGCGACAAagtagaaaaaatacaaaaaagagtAAGGAAGGAACGAGGACACCACCCTCCTCCGATCGAATTAGACGAGCCCATAGAATGCGATATCTGTactaaaacttacaaaaacaacGTTGCATTTGCCATGCATTCTAGAGAACACAGCGATGAAAACAAATACAGCTGCCACCTATGTGACTTTAAAAACAGTTCGAGGTATCACATAGAAATGCACATCAGAGCACACGAAGGCACCACAAAATACAAATGCGAAATTTGTGATAAAGCTTTTACTGTAAGCACGAACGCCATAGAGCACAAATACTTTCATACTGGAGAAAAACCTTTTCAATGCGAGATATGTGGAAAACACTTCATGTATTCCAGGTTCTTGGCATCACATAGAAGAACACAGCACTGGGAAATCATGACCGGTACTCCTTTGGTGAAATATGACTGCAAAATTTGCAACAAGCATTACACATCATCCAGTGGGCTGAAGCGGCACAATCTGAGAAATCACAATACTGAAGGTATAGATACCAGCGTCCTTTGTGATACTTGCGGGAAACGTATTTCTAGCAAAGAGAAATTGAAGTTTCACATTAGAATCCACACTGGATACAAACCATTTGCGTGCGAAGTTTGTGGAAAAGCGTTTACAGAGAAAGAACGGCTAAAAGAGCATATGCGAGTTCACACTGGAGAAAAACCGTTTGTATGTAAGTATTGCGGCAAGTCCTTTACACAGCGCTCTCCACTAAAGATCCACGAGAGAACTCATACTGGCGAGCAGCCCTATGTATGTCGACTCTGTGGCAAAGGCTTCGTGTCCAAAAGTGCTATGGATGCTCATATGAAAAGCTGTTCAGCATTACAGATTCCTAGCCACAATGCCAAACCACAGTATCTTTATATTCCGCCGGTGGTAGAAGAACACCCTCCCTTCAACTGTAGAGTTTGCAATAAGATGTACGGCTCTAAAGGAGCTTTAGAAGCTCACATGGTTTCTCACAGTGTTCACAGTGCTTCTTACAGCATGGTTTCATCTCCAGCTCATAGCTATGTCTACCAATCAGACGACACTACCGACAACACTGTAGACGGACATCAATTGCAATTACAGAGTCACATTCACGACATGTTGCAAAAGCGACAATTCGCTGCATCTTTAAGCGAATTGATTGCTCGGAAAGAGTTTTCTAATAATGTTATTGTTAAACCAGAACTTTTGAGTGATCATAATGAAGAGTCTTTTCACTCACAAGATTTTAATGAGAAACGTGAGTATCGCGCGGATGAGGAATTAGGCGAGAAAAGCGAGTACACCGACGAAGTCAGTCAGTGA
- Protein Sequence
- MHVRAHEGTTKYKCDICGKAFTISTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIVTGSPLVKYDCNECNKHYTSSTGLKRHNMTHHGSPGVDHSVLCDICGKSLSSKEKLKFHRRIHTGYKPFACEICTKSFSRKEQLKEHERVHTGEKPYICKFCGKGFTQRSPLRIHERTHTGERPYTCMICQKGFISKGVMDTHMKSCSAARHAPQRRRRKSKKTRQSKQDDDPDFEIKIKVEKDDGNNEAIAGEGIKKPKRGRKKGSKKGDKVEKIQKRVRKERGHHPPPIELDEPIECDICTKTYKNNVAFAMHSREHSDENKYSCHLCDFKNSSRYHIEMHIRAHEGTTKYKCEICDKAFTVSTNAIEHKYFHTGEKPFQCEICGKHFMYSRFLASHRRTQHWEIMTGTPLVKYDCKICNKHYTSSSGLKRHNLRNHNTEGIDTSVLCDTCGKRISSKEKLKFHIRIHTGYKPFACEVCGKAFTEKERLKEHMRVHTGEKPFVCKYCGKSFTQRSPLKIHERTHTGEQPYVCRLCGKGFVSKSAMDAHMKSCSALQIPSHNAKPQYLYIPPVVEEHPPFNCRVCNKMYGSKGALEAHMVSHSVHSASYSMVSSPAHSYVYQSDDTTDNTVDGHQLQLQSHIHDMLQKRQFAASLSELIARKEFSNNVIVKPELLSDHNEESFHSQDFNEKREYRADEELGEKSEYTDEVSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -