Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018380.1:12403663-12409787[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.036 6.8 9.5 1.1 2 23 14 33 13 33 0.89

2 18 2.1e-05 0.0038 19.7 0.5 3 23 44 64 43 64 0.98

3 18 1.2e-07 2.2e-05 26.7 1.5 1 23 70 92 70 92 0.99

4 18 6.6e-06 0.0012 21.2 3.8 1 23 98 120 98 120 0.98

5 18 0.00017 0.033 16.8 3.2 1 23 163 185 163 185 0.98

6 18 6e-06 0.0011 21.4 2.8 1 23 193 215 193 215 0.98

7 18 7.1e-07 0.00013 24.3 1.5 1 23 222 244 222 244 0.98

8 18 0.012 2.3 10.9 1.4 2 23 251 273 250 273 0.96

9 18 0.0029 0.55 12.9 0.6 2 23 281 302 280 302 0.93

10 18 0.0012 0.23 14.1 1.0 1 23 308 331 308 331 0.95

11 18 0.00036 0.066 15.8 0.8 2 23 337 358 336 358 0.97

12 18 4.6e-07 8.6e-05 24.9 3.2 1 23 364 386 364 386 0.98

13 18 4.7e-06 0.00088 21.7 0.1 1 23 392 415 392 415 0.97

14 18 0.013 2.4 10.9 3.6 2 23 486 508 485 508 0.95

15 18 0.059 11 8.8 1.1 1 20 513 532 513 537 0.91

16 18 0.0022 0.41 13.3 0.5 3 23 545 566 544 566 0.97

17 18 0.0012 0.22 14.1 2.6 1 20 570 589 570 592 0.95

18 18 0.0042 0.77 12.4 0.7 1 23 597 619 597 619 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.036	6.8	9.5	1.1	2	23	14	33	13	33	0.89
2	18	2.1e-05	0.0038	19.7	0.5	3	23	44	64	43	64	0.98
3	18	1.2e-07	2.2e-05	26.7	1.5	1	23	70	92	70	92	0.99
4	18	6.6e-06	0.0012	21.2	3.8	1	23	98	120	98	120	0.98
5	18	0.00017	0.033	16.8	3.2	1	23	163	185	163	185	0.98
6	18	6e-06	0.0011	21.4	2.8	1	23	193	215	193	215	0.98
7	18	7.1e-07	0.00013	24.3	1.5	1	23	222	244	222	244	0.98
8	18	0.012	2.3	10.9	1.4	2	23	251	273	250	273	0.96
9	18	0.0029	0.55	12.9	0.6	2	23	281	302	280	302	0.93
10	18	0.0012	0.23	14.1	1.0	1	23	308	331	308	331	0.95
11	18	0.00036	0.066	15.8	0.8	2	23	337	358	336	358	0.97
12	18	4.6e-07	8.6e-05	24.9	3.2	1	23	364	386	364	386	0.98
13	18	4.7e-06	0.00088	21.7	0.1	1	23	392	415	392	415	0.97
14	18	0.013	2.4	10.9	3.6	2	23	486	508	485	508	0.95
15	18	0.059	11	8.8	1.1	1	20	513	532	513	537	0.91
16	18	0.0022	0.41	13.3	0.5	3	23	545	566	544	566	0.97
17	18	0.0012	0.22	14.1	2.6	1	20	570	589	570	592	0.95
18	18	0.0042	0.77	12.4	0.7	1	23	597	619	597	619	0.98

Sequence Information

Coding Sequence: ATGGAGACTCATGGTCAAGGTCCACCAGTAGATCCAAAGGAATGTCCTATTTGCAacaaggaatttaaaaatatcagaaTTCATATGCGAAGGTTTCATGGTTCTAGAAAAAAGGCCAAATTTAGCTTGTGTGACCTTTGTGGCAAGGAATTTAAAACTAAAGAAGGCCTTAACATGCATTTAATGAAGCATCAAGGAATAAAACCTTTCCAATGTGAATATTGTGAAAAATCTTTTACTattaaagataatttaaaattgcaTATTAGAACCCATACAGGGGAGAAGCCTCATCAATGTCCGgaatgtaaaaaatgtttttctcaaATCACTCCACTAAAAATCCATATGAGAATGCATTCGGGGGAGAAGCCATATGGGTGTGAATTATGCAATTCCAAgcTCAATAATTTTCCAGATCTTGGACACATGTGTCAAATTGTAATCAAAGAAGAAACCCTGCCTTCAAATCTGGTTATTAAAACGTTTCAGTGCAACCAATGCCTGAGATTCTTCGCCAAAAAGAAATACTTGGAGAGGCATATAAAAAACCACATTCGTGAGTTaacgcgaccatttagatgtgTTCATTGTGACAAGGGTTTTACTACAAATTACGGCCTCAAAAGTCATATGTTTGTACACGAAGACCGTCCTTCGACTTTCGTTTGTGACGTATGCCCTAAGAAATTTAAAAGACAAAAGAATTTGGTGCTTCACCAAAAAAGACATTTGAAAGAGTACGTCATAAAATGTGAAGAGTGCAATCAAGGTTTTGTGTGCAAAGGAGACTATATTCAACACATGAGGAACAAACATGAGATGGATAAAGAAAAGGTCGTCTGCTTTATATGTGGAAAAGATTTTGTAAAAGGTCATTTCAAGAGGCATATAGCAAATGTACATGGGGAAACTGGGGAGTTTCCCTGTGAGCTGTGTGGAAAAGTATTTGACAGGAAAATTAGTCATGAGAGACACGTGAAGATTTTTCATAATCTTACTCCTCAAGTGTGCGATATATGTGGACAGGAGTTTAGGTGGAAACATAGTCTAAGGGATCATCTGAGAATTCATGCAGGTTTAAAACCCCATCAATGTGTGTACTGCGACAAGGCTTTCACAAGAAGCGATTTTCTAAAACAGCATATCAGAACTCACACTGGTCAAAGACCATTTGAGTGTTCGGAGTGCGGAAAAGGGTTCACTCAAGCCACTCCTCTGAAGGTTCACTTAAAAAGTGTTCACAAGAAAGATAAAGTTCCTTTAAAAAACAAGATAAAAATCAAAACAGAAATAAAAGAAGAATTATTTGACGATTACGAGTATGATAATTTGGACAGCCCCGATCTAATCCCGGAAATCTCTATCCAAGAAGATGGGCCagaaatgtatgtgaaaaaagAGAAAGAAGAACCGCCGGATGAATGTAAAACGGACTCCAAAGCTCTGTATGACAAGTGCCCACTATGCAGAAAAAACTGTAAAACCAAATGGTTCTTGCTCTCTCACATGTTTAAGGAGCACAATCAAACACTTTATAAATGTCACGGGtgtaaatatatgtttttaaaaaaaatcgaccTAGATAAACATTTAGCTGATGAACTTCATGTAACTCAGCAAATTGAAGCTTGCCTTAAATGTGGTCTGGGATTTACCTCGAACTTGGAGTATGTACGTCATTTAAGACGGAAACATGAACTTCGTTTCGAATGCGATTACTGCCACAAGTTTTTTGTAAGTAAACTAACATTAAAAAGTCATCTCCCACTGCATGGATTGGACTTTTACGAATGTAAGCCATGCTTAGAAACTTTTATTCGGAAGAAGGCTTATTTAACACATATAAGATCGCATAAACAATGTGGTGCTTCTAGCAAAAAGAAATGA
Protein Sequence: METHGQGPPVDPKECPICNKEFKNIRIHMRRFHGSRKKAKFSLCDLCGKEFKTKEGLNMHLMKHQGIKPFQCEYCEKSFTIKDNLKLHIRTHTGEKPHQCPECKKCFSQITPLKIHMRMHSGEKPYGCELCNSKLNNFPDLGHMCQIVIKEETLPSNLVIKTFQCNQCLRFFAKKKYLERHIKNHIRELTRPFRCVHCDKGFTTNYGLKSHMFVHEDRPSTFVCDVCPKKFKRQKNLVLHQKRHLKEYVIKCEECNQGFVCKGDYIQHMRNKHEMDKEKVVCFICGKDFVKGHFKRHIANVHGETGEFPCELCGKVFDRKISHERHVKIFHNLTPQVCDICGQEFRWKHSLRDHLRIHAGLKPHQCVYCDKAFTRSDFLKQHIRTHTGQRPFECSECGKGFTQATPLKVHLKSVHKKDKVPLKNKIKIKTEIKEELFDDYEYDNLDSPDLIPEISIQEDGPEMYVKKEKEEPPDECKTDSKALYDKCPLCRKNCKTKWFLLSHMFKEHNQTLYKCHGCKYMFLKKIDLDKHLADELHVTQQIEACLKCGLGFTSNLEYVRHLRRKHELRFECDYCHKFFVSKLTLKSHLPLHGLDFYECKPCLETFIRKKAYLTHIRSHKQCGASSKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -