Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018380.1:12440954-12446421[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.2 7.8e+02 3.0 0.4 10 23 3 16 1 16 0.90

2 19 0.0004 0.075 15.6 1.3 1 23 22 45 22 45 0.96

3 19 0.00065 0.12 15.0 0.2 1 23 51 73 51 73 0.97

4 19 2.1e-05 0.0038 19.7 1.3 3 23 81 102 79 102 0.95

5 19 1.1e-06 0.00021 23.7 0.2 1 23 109 131 109 131 0.98

6 19 5.9 1.1e+03 2.5 1.1 2 12 144 154 143 163 0.85

7 19 2e-05 0.0037 19.7 1.6 1 23 170 192 170 192 0.98

8 19 5.4e-05 0.01 18.4 7.0 1 23 198 222 198 222 0.97

9 19 8.1e-07 0.00015 24.1 0.4 1 23 228 250 228 250 0.98

10 19 0.021 3.9 10.2 0.5 1 23 256 279 256 279 0.97

11 19 1.3e-06 0.00024 23.5 0.7 1 23 297 320 297 320 0.96

12 19 7.6e-06 0.0014 21.1 1.8 1 23 326 348 326 348 0.98

13 19 0.0002 0.036 16.6 0.8 3 23 356 377 354 377 0.94

14 19 2.3e-05 0.0044 19.5 1.5 1 23 382 404 382 404 0.98

15 19 0.59 1.1e+02 5.7 4.4 2 23 415 434 414 434 0.90

16 19 6.8e-06 0.0013 21.2 0.3 1 23 441 463 441 463 0.98

17 19 1.3e-05 0.0025 20.3 2.5 1 23 469 491 469 491 0.99

18 19 1.2e-06 0.00023 23.5 0.1 1 23 497 519 497 519 0.98

19 19 0.01 2 11.2 1.5 1 23 525 548 525 548 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.2	7.8e+02	3.0	0.4	10	23	3	16	1	16	0.90
2	19	0.0004	0.075	15.6	1.3	1	23	22	45	22	45	0.96
3	19	0.00065	0.12	15.0	0.2	1	23	51	73	51	73	0.97
4	19	2.1e-05	0.0038	19.7	1.3	3	23	81	102	79	102	0.95
5	19	1.1e-06	0.00021	23.7	0.2	1	23	109	131	109	131	0.98
6	19	5.9	1.1e+03	2.5	1.1	2	12	144	154	143	163	0.85
7	19	2e-05	0.0037	19.7	1.6	1	23	170	192	170	192	0.98
8	19	5.4e-05	0.01	18.4	7.0	1	23	198	222	198	222	0.97
9	19	8.1e-07	0.00015	24.1	0.4	1	23	228	250	228	250	0.98
10	19	0.021	3.9	10.2	0.5	1	23	256	279	256	279	0.97
11	19	1.3e-06	0.00024	23.5	0.7	1	23	297	320	297	320	0.96
12	19	7.6e-06	0.0014	21.1	1.8	1	23	326	348	326	348	0.98
13	19	0.0002	0.036	16.6	0.8	3	23	356	377	354	377	0.94
14	19	2.3e-05	0.0044	19.5	1.5	1	23	382	404	382	404	0.98
15	19	0.59	1.1e+02	5.7	4.4	2	23	415	434	414	434	0.90
16	19	6.8e-06	0.0013	21.2	0.3	1	23	441	463	441	463	0.98
17	19	1.3e-05	0.0025	20.3	2.5	1	23	469	491	469	491	0.99
18	19	1.2e-06	0.00023	23.5	0.1	1	23	497	519	497	519	0.98
19	19	0.01	2	11.2	1.5	1	23	525	548	525	548	0.95

Sequence Information

Coding Sequence: ATGATTTACACAAAACGACGAAACCTTAAACAACACCTGGTTTCCCACAACCCAGATAGACCCTTTACATGCTCAATTTGCGAGAAACGATTCAAAAAGAAGGGCGCCCTCAATTTTCACATTAAAAATATCCACAACTCATCCAGAGAATATCCTTGTGGAACGTGTGGAAAAGTTatagcaaataaaaaatattacgaaTATCACATGCAGGGTCACAGAAAAGATTATAATATGTTTTGCGAAACTTGCGGTAAAGGTTTTGTATATAAACATCAACTTAAGGTCCACATGGAAATTAAACATAGTACGGTAAAACAACGTTTCGTTTGTGATATATGTGGTAAAGAATTTCCTCTAGCTAGTTACCTCAGAAGGCATCAGCTGCGCCATAGAGAAGACCCCAATAAGAAGTCGTTAACTCCCACTGAGTGTGTAATTTGTAAAAAATCCTACGCGAGAATCAACAGACATTATAGGGAAGTTCACTCGAAGGAAGGCGCAAGCTATATGTGCGATCTTTGTGGCCAAAAATTCCGGCAGAGCTTTGAACTGAAACTTCACACAATGCGTCACAAAGGGGAGAAGCCTCACAAGTGCTCATACGAAGGCTGTGATAAAAGTTTTGTTAGGAAACAGCATTTACATTTGCATATGCGAAGCCATACCGGGGAAAAACCTTTTGAATGTAAACTATGCGGGAAAACTTATACTCAAAAACCTACCCTTGTAGTTCATATGCGCGGACATTTTGGCGAGAGACCCTACGCATGTGACCTTTGTGCCAGTACATTTGCTTCAAAGCAAAGATTAAATATTCACAAACGAAAAGTTCATAAATTAATAGTGCTCAAAGGACATCTGAGCGTCCACCAGTCGGAAAAGCCATTTTCCTGTACTATCTGTAACACGGGGTTTAAAAAGAATTCGGCACTAAGACGACATATTCGTGAAATTCACGAACAAATACAAACGTATTCGTGTTTGGAGTGCGGGAAAACTTTCAACAGCAAAACAAACTATGTCATCCATACAAAAAGACATATGGAACAATATGTCGTTCATTGCGAAGTTTGCAATGAGGGCTTTGTTACGAAAACCGAGTACAGGAGACATATGGATGTTAAGCACATACGTAAAGAATTTGTGTGTGATACCTGCGGAAAAAGTATTTCCAGCGAGAGACATTTAAAGGAGCATAGGCGGATACATGAGGAAAAATATGCTGATAGGTATTTCCAGGAATGTCGTGTTTGTAATAAGAAATTCAGGCATCTCAAAAAGCATTACAGAGAATCTCACGAGGGTGACGGTAACAACTACGTCTGTGACATTTGTGGAAGATCATTTCGTGGAGAAAATAGCTTTAAAGTTCACCTTAAGATCCACAAAGGCGAGAGACCTTTTCAGTGCGAAGTTTGTCACAAGGAATTCTACTCGAAACAGTACCTAACAATCCACTGGAGGGTCCACACTGGAGAGAAACCTTTTGAGTGCGAGATATGTGGGAAAGGGTTCGCTCAGAAGCCTCCTCTGAAGGTACACATGAGGTTGCATTCGGGAGAAAGGCCTTATGAGTGTGATTTTTGTGGGGAAAAATTTGTCTCCAAACAGAAAATGAATTTTCATCAGAAGAGCGTGCATCAAGTAGTGAACTGGCGAAAAATCAAGGTTGACAGTTGA
Protein Sequence: MIYTKRRNLKQHLVSHNPDRPFTCSICEKRFKKKGALNFHIKNIHNSSREYPCGTCGKVIANKKYYEYHMQGHRKDYNMFCETCGKGFVYKHQLKVHMEIKHSTVKQRFVCDICGKEFPLASYLRRHQLRHREDPNKKSLTPTECVICKKSYARINRHYREVHSKEGASYMCDLCGQKFRQSFELKLHTMRHKGEKPHKCSYEGCDKSFVRKQHLHLHMRSHTGEKPFECKLCGKTYTQKPTLVVHMRGHFGERPYACDLCASTFASKQRLNIHKRKVHKLIVLKGHLSVHQSEKPFSCTICNTGFKKNSALRRHIREIHEQIQTYSCLECGKTFNSKTNYVIHTKRHMEQYVVHCEVCNEGFVTKTEYRRHMDVKHIRKEFVCDTCGKSISSERHLKEHRRIHEEKYADRYFQECRVCNKKFRHLKKHYRESHEGDGNNYVCDICGRSFRGENSFKVHLKIHKGERPFQCEVCHKEFYSKQYLTIHWRVHTGEKPFECEICGKGFAQKPPLKVHMRLHSGERPYECDFCGEKFVSKQKMNFHQKSVHQVVNWRKIKVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -