Basic Information

Insect: Polydrusus pterygomalis
Gene Symbol: -
Assembly: GCA_963969555.1
Location: OZ018380.1:12390776-12393349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0064 1.2 11.8 0.2 3 23 31 52 29 52 0.93

2 20 0.00035 0.065 15.8 4.1 1 23 58 80 58 80 0.96

3 20 0.0033 0.61 12.7 1.4 2 23 86 107 85 107 0.98

4 20 7.8e-05 0.015 17.9 1.6 2 23 114 136 114 136 0.97

5 20 2.5e-05 0.0047 19.4 3.4 3 23 142 162 141 162 0.99

6 20 5e-05 0.0094 18.5 2.1 2 23 172 194 171 194 0.96

7 20 0.02 3.7 10.3 3.1 1 23 201 223 201 223 0.96

8 20 6.1e-06 0.0011 21.4 0.6 2 23 230 251 229 251 0.97

9 20 9.1e-06 0.0017 20.8 0.3 1 23 257 280 257 280 0.94

10 20 0.00028 0.051 16.1 2.1 1 23 286 309 286 309 0.95

11 20 0.0005 0.092 15.3 4.7 2 23 346 367 345 367 0.96

12 20 0.013 2.5 10.9 1.4 1 23 373 396 373 396 0.95

13 20 0.00069 0.13 14.9 0.6 1 23 403 425 403 425 0.99

14 20 0.0033 0.61 12.8 0.3 2 23 432 454 432 454 0.95

15 20 0.00011 0.021 17.4 1.1 1 23 459 481 459 481 0.96

16 20 0.0019 0.35 13.5 1.7 2 23 492 514 491 514 0.95

17 20 6.9e-05 0.013 18.0 0.6 1 23 521 543 521 543 0.97

18 20 2.6e-06 0.00047 22.5 0.8 2 23 550 571 549 571 0.97

19 20 3.5e-06 0.00064 22.1 0.5 3 23 579 599 577 599 0.97

20 20 0.001 0.19 14.3 0.7 1 23 605 628 605 628 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0064	1.2	11.8	0.2	3	23	31	52	29	52	0.93
2	20	0.00035	0.065	15.8	4.1	1	23	58	80	58	80	0.96
3	20	0.0033	0.61	12.7	1.4	2	23	86	107	85	107	0.98
4	20	7.8e-05	0.015	17.9	1.6	2	23	114	136	114	136	0.97
5	20	2.5e-05	0.0047	19.4	3.4	3	23	142	162	141	162	0.99
6	20	5e-05	0.0094	18.5	2.1	2	23	172	194	171	194	0.96
7	20	0.02	3.7	10.3	3.1	1	23	201	223	201	223	0.96
8	20	6.1e-06	0.0011	21.4	0.6	2	23	230	251	229	251	0.97
9	20	9.1e-06	0.0017	20.8	0.3	1	23	257	280	257	280	0.94
10	20	0.00028	0.051	16.1	2.1	1	23	286	309	286	309	0.95
11	20	0.0005	0.092	15.3	4.7	2	23	346	367	345	367	0.96
12	20	0.013	2.5	10.9	1.4	1	23	373	396	373	396	0.95
13	20	0.00069	0.13	14.9	0.6	1	23	403	425	403	425	0.99
14	20	0.0033	0.61	12.8	0.3	2	23	432	454	432	454	0.95
15	20	0.00011	0.021	17.4	1.1	1	23	459	481	459	481	0.96
16	20	0.0019	0.35	13.5	1.7	2	23	492	514	491	514	0.95
17	20	6.9e-05	0.013	18.0	0.6	1	23	521	543	521	543	0.97
18	20	2.6e-06	0.00047	22.5	0.8	2	23	550	571	549	571	0.97
19	20	3.5e-06	0.00064	22.1	0.5	3	23	579	599	577	599	0.97
20	20	0.001	0.19	14.3	0.7	1	23	605	628	605	628	0.97

Sequence Information

Coding Sequence: ATGCATACCAAACAAATTCATTGTACAACACATAAAAAGTTATCTTCAATAATCGATAAAAATAACTTATCTAAGCCTGAAGATAGCATTTGCGacttatgtcaaaaaatgttcCCTTCTGCTAGACGATTACGGATGCACGTAAAAGGCGTTCATACTGAAGATCGTCCTCACATATGCACTCAATGTTTAAAAtcgtttaaaaccaaaaatgcgTTAACCCACCATTTAGAAATTCATACAAGAACTTTAGTACAATGCGAAGTATGTTCGAAACATTTAACCAGTAATACTGTGTTGGAATTACACATGAAAAGACATAAACAAGAATTTGTCGCCGAATGCCAAATGTGTGATTTAAAATTTGTCTCAGAGCATGAACTAAAAAGTCACATGAGAGTCAAGCATGGCGAGAAAGAATTATGTCCTCATTGTGGAAAAGGATTTCACAGCAACACCTCTTTAATTTACCATATGAAAACACACgacccaaattttaaaaaaggaacttTAAAGTGCAGTCACTGTATGAAAGTTTTTGACCAGGAAAGAAATCTTAAACGTCATTTAAGAGTCGCGCATGACGATTGCAGAAAAACATATTGTTGTGATCTTTGTGGAAAAGTTCTAACGTCTTTAGATGGTTTCAGACTACATAAGTTACATCACCAAGGGGAAAAGCCGTTGGAATGCGAAGTTTGTGGAAAAAGGTTTTTAAGAAAATCTACTTTGATGTGGCATTTGCGCACCCATACAGGGGAAAAACCTCACGAGTGTAATTTTTGTCCGCAAGCATTTACTCAACCGAGTGCCTTAAAACGACATGTTATGGGAGTGCATGGATTGAAACTCCCCTTTATTTGCAAAATTTGCGACGAGCATTTTTCCACTAAGATCTTCTTAAATGATCACACCAGAGCTAAACATTCAGAagacGATATGctcgatattaaaaaagaaaatttagacGACAACCAAAACCCACAAGCGAAAAGtcgaaaaagaaagaaaaaacgtACCTACAAAACAAATTTATCTTGCCAATTTTGTCAGAAAGTATTCCATGACAatcgccatttaaaaaaacatcttataGTCCACTCAGAGGCCAGACCTTATAAATGTCAAACTTGTGACAAGTGGTTCAAAAGCCGGTATCAAGCAAAATCACATGCCGAACGCGTTCATACAgatcaacaaaaaatatatgaatgtGAAATTTGTTTAATGAAATTGAAATCAAAGGGGTCGTTAACAATTCATACCAGAAGACACCTGAAGGACTACGTAGCAAAATGTGAAAATTGCAATATTGGGTTTGTGACAAACCAAGAGTACATAAACCATATGGGTTCGAAACATGGTCCAAGTAATCACATTTGCAATGTGTGTGGACGATCATGTTATGATAAGGCAGCGTTGCAAGGTCATATGGCTCGCCACGCTAAGGATTACGGCGTAAATCCAACTATTCGTTGCGACATTTGCGATAAGACGTTTTTGCAAGAGAAGTACCTCAAACACCATTGGCTGAGAATGCATCAAAATGGTGGTCAGCGATTCATATGCGACCTTTGTGGCAAAAAGGTTAATTCCAAACGCTCCCTAAGAGACCACATGTACATACACCAAGGTCTTAAACCTCTGGAGTGCAAGGAATGTGGCAAATCTTTTGCCTTAAGAACAACTTTAAAGTTACATTTACGGACACATACAGGTCAACGACCTTACGGGTGTAACATATGTGGTAAAACTTTTACGCAAAGAACTCCCTTGACTGTTCATTTAAGATATCATACTGGAGAGAGACCCTATGAATGTCACTTGTGCGAGGAAAAGTTTGTCAGTAGAGGAGTTTTAAACATGCATGTAAAGAAAATTCATggatgcagtatttaa
Protein Sequence: MHTKQIHCTTHKKLSSIIDKNNLSKPEDSICDLCQKMFPSARRLRMHVKGVHTEDRPHICTQCLKSFKTKNALTHHLEIHTRTLVQCEVCSKHLTSNTVLELHMKRHKQEFVAECQMCDLKFVSEHELKSHMRVKHGEKELCPHCGKGFHSNTSLIYHMKTHDPNFKKGTLKCSHCMKVFDQERNLKRHLRVAHDDCRKTYCCDLCGKVLTSLDGFRLHKLHHQGEKPLECEVCGKRFLRKSTLMWHLRTHTGEKPHECNFCPQAFTQPSALKRHVMGVHGLKLPFICKICDEHFSTKIFLNDHTRAKHSEDDMLDIKKENLDDNQNPQAKSRKRKKKRTYKTNLSCQFCQKVFHDNRHLKKHLIVHSEARPYKCQTCDKWFKSRYQAKSHAERVHTDQQKIYECEICLMKLKSKGSLTIHTRRHLKDYVAKCENCNIGFVTNQEYINHMGSKHGPSNHICNVCGRSCYDKAALQGHMARHAKDYGVNPTIRCDICDKTFLQEKYLKHHWLRMHQNGGQRFICDLCGKKVNSKRSLRDHMYIHQGLKPLECKECGKSFALRTTLKLHLRTHTGQRPYGCNICGKTFTQRTPLTVHLRYHTGERPYECHLCEEKFVSRGVLNMHVKKIHGCSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -