Ppte051060.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018380.1:12436602-12439089[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.2e-06 0.00098 21.6 0.5 3 20 19 36 18 37 0.97 2 20 4.6e-07 8.6e-05 24.9 4.0 1 23 46 69 46 69 0.98 3 20 0.011 2 11.2 1.3 2 23 75 96 74 96 0.95 4 20 1.4e-05 0.0026 20.2 2.4 1 23 105 127 105 127 0.98 5 20 0.0022 0.42 13.3 5.7 1 23 133 155 133 155 0.98 6 20 5.1e-08 9.5e-06 27.9 1.0 1 23 161 183 161 183 0.98 7 20 0.00011 0.021 17.4 0.8 1 23 189 212 189 212 0.96 8 20 0.0046 0.86 12.3 0.0 7 23 261 278 257 278 0.93 9 20 0.00025 0.047 16.3 0.2 1 23 284 307 284 307 0.98 10 20 0.00011 0.02 17.4 0.6 1 23 312 334 312 334 0.97 11 20 0.00022 0.04 16.5 0.2 1 23 342 365 342 365 0.92 12 20 0.0078 1.5 11.6 0.6 3 23 373 394 371 394 0.94 13 20 6.5e-05 0.012 18.1 3.1 2 23 402 423 401 423 0.97 14 20 5.9 1.1e+03 2.5 0.2 3 23 431 452 430 452 0.90 15 20 0.014 2.5 10.8 0.1 2 23 458 479 457 479 0.93 16 20 0.1 19 8.1 1.3 1 15 489 500 489 509 0.74 17 20 7.8e-07 0.00015 24.2 1.0 1 23 516 538 516 538 0.98 18 20 2.2e-05 0.0041 19.6 5.5 1 23 544 566 544 566 0.97 19 20 0.00014 0.026 17.1 0.2 1 23 572 594 572 594 0.98 20 20 0.00034 0.063 15.9 2.0 1 23 600 623 600 623 0.96
Sequence Information
- Coding Sequence
- atgcaatttgtAAGCAATAGAAAACAACAAGGACATGTGATCAAGACTCTATTGTGTCCAATATGTGGAAAAAGTTTTAGTCAACACTACAAATTGTCTAGACACATGGCATGTAGACATTCCGATGAAAGACCATTTCAGTGTGAACTATGTAAAAAAGGATTTAAAAGGAAAGCCCACCTAAAAACTCATATGAAAACTGTCCATCTTTCTCTAGGccttaaatgtaaaatttgccaaaaaacattaaagaatGATATTTCACTCAAGGAGCATTCAAAACTTCACAATCCCaataaaaaaagaaacagcTTTGTTTGCGATCATTGTGGTAAagaatttacagaaaaaaagAGCTTCAAACTGCATCTTATGATTCACCAAGGAATTAGACCACATCAGTGCAAGGAATGTGGGAAACATTTTCTTacaaataacaaattaaaagtgCATACCCGTTTACATACAGGGGAAACACCGTATATGTGCGATCTTTGTGGAAAAAGATTTACTCAAAAACAAGCATTGAATAGGCATATGAGATGGCACTCAGgagaaaaatcttttaaatgtgAAATATGTGACATGGCATATTATGATAACAAATATCTTAGGGCACACTACAAAGCTAAGCATAACAGCTCTGTAATTCCAAATGCCGCACAAGACAAAACCATAATTTCggAAATTATAAGAATAGAAGTTGAAGTTCCTGATTCCAATGAAGAAGAGGGTAAGAAAACAGTAGTTGTCCGCAAAATTCTTCTGTGCCCTATTGACGGAAAAGCATTTACGCGAAGCTACTCTTTATCTAGACACATGGCTTCAGTACATTCTAAGGGACTATCATACCCATGTGAATTTTGTGAACAAACCTTCAAGCTAAAAATAAGCCTTAATGCTCATGTAAATACTGCCCATGTTTCTGAGAGATTtatatgtaaaatttgtaaagaaGTTTTTACGAATGTTATAACATTGACgtcgcatttaaaaaatcacgtccaatataaaaataaaagcttTTCGTGTCCACTCTGCGAACGAGAATTTAGCAAAAGTAGTGATGTTAATCGACACGTATCTGCAGTTCATCTTGACGAACGACCTTTTGGATGTGACATTTGCAACCAGTGGTTTAAAACAAGCGGTAATCTTAACCAGCATAAACAGGGAAAACATCAGGAAAACGCCAAAGACttaaaatgcaaattttgtGAAAAGACATTTAAGTATCAGAGTGGTCTAAAGATGCACGAGAAAAggcatcttaaacaattcgTCAAATACTGTGAACCATGTCAGCAGCCATTTTATTTCGAACGTGACTATGATAAGCATATACTGTTAAAGCATTCCGATCGTACAATTCCATGTACCGTGTGTGACAAAATGTTCGCCACTCCAGAAATTATGATGGAACATCGGTTACGTCACGGTAGGCCTCGTAAACCCGCTGAATTTCACGAGTGCCCCCACTGCAATAAAAGTTACATTAACATAAATGCACATATTCGAGATTTTCACCAAACTAATGGGAAAAACTATGTGTGCGATAACTGCGGGAAATGTTTTAGAGAGAAAGGTGGTTTGAAACTACATATGATGGTTCACCAGGGAATAAGACCACATCAGTGTCATAATTGTGGCAAAAGTTTTGTGACCAAGCAACATTTGATAGTACATAATCGTGCACATACCGGGGAGACGCCGTATAAGTGTAAAATTTGTGGAAATGGATTTGCCCaaatgaataaattaaatattcacATGGCATTGCATTCTGGGAAAAAACCATTTAAATGTGATATTTGTTCCATGGGCTTTTATGATAAGAGATATCTAACTAGGCACAACAAAATTAAGCATAATCAGTGcgattaa
- Protein Sequence
- MQFVSNRKQQGHVIKTLLCPICGKSFSQHYKLSRHMACRHSDERPFQCELCKKGFKRKAHLKTHMKTVHLSLGLKCKICQKTLKNDISLKEHSKLHNPNKKRNSFVCDHCGKEFTEKKSFKLHLMIHQGIRPHQCKECGKHFLTNNKLKVHTRLHTGETPYMCDLCGKRFTQKQALNRHMRWHSGEKSFKCEICDMAYYDNKYLRAHYKAKHNSSVIPNAAQDKTIISEIIRIEVEVPDSNEEEGKKTVVVRKILLCPIDGKAFTRSYSLSRHMASVHSKGLSYPCEFCEQTFKLKISLNAHVNTAHVSERFICKICKEVFTNVITLTSHLKNHVQYKNKSFSCPLCEREFSKSSDVNRHVSAVHLDERPFGCDICNQWFKTSGNLNQHKQGKHQENAKDLKCKFCEKTFKYQSGLKMHEKRHLKQFVKYCEPCQQPFYFERDYDKHILLKHSDRTIPCTVCDKMFATPEIMMEHRLRHGRPRKPAEFHECPHCNKSYININAHIRDFHQTNGKNYVCDNCGKCFREKGGLKLHMMVHQGIRPHQCHNCGKSFVTKQHLIVHNRAHTGETPYKCKICGNGFAQMNKLNIHMALHSGKKPFKCDICSMGFYDKRYLTRHNKIKHNQCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -