Ppte051035.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- Gzf1
- Assembly
- GCA_963969555.1
- Location
- OZ018380.1:12268961-12290138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 3.3 6.2e+02 3.3 0.6 2 19 81 98 80 101 0.86 2 35 6.8e-05 0.013 18.1 2.5 1 23 126 148 126 148 0.99 3 35 0.55 1e+02 5.8 0.1 1 23 171 193 171 193 0.97 4 35 0.023 4.3 10.1 1.0 2 19 198 215 197 219 0.90 5 35 6.3 1.2e+03 2.4 0.4 3 23 227 250 225 250 0.71 6 35 0.00081 0.15 14.7 4.4 1 23 256 278 256 278 0.97 7 35 0.0044 0.81 12.4 1.6 1 23 284 307 284 307 0.93 8 35 0.06 11 8.8 0.1 2 20 319 337 319 339 0.93 9 35 0.00013 0.025 17.1 0.4 1 23 355 377 355 377 0.95 10 35 1.3e-05 0.0024 20.3 0.3 1 23 383 405 383 405 0.98 11 35 0.36 67 6.3 1.0 1 13 411 423 411 428 0.83 12 35 2 3.7e+02 4.0 2.2 2 21 481 500 480 501 0.90 13 35 0.0031 0.58 12.8 2.6 3 23 530 550 529 550 0.97 14 35 0.66 1.2e+02 5.5 0.1 1 23 571 593 571 593 0.97 15 35 3.8 7.1e+02 3.1 0.1 2 23 598 619 597 619 0.93 16 35 3.3 6.1e+02 3.3 0.4 2 23 625 649 624 649 0.82 17 35 2.8e-05 0.0052 19.3 3.0 1 23 655 677 655 677 0.98 18 35 0.0041 0.76 12.5 2.9 1 23 683 706 683 706 0.95 19 35 0.019 3.6 10.4 0.8 2 20 718 736 717 738 0.95 20 35 8.9e-05 0.017 17.7 0.2 1 23 752 774 752 774 0.95 21 35 3.4e-06 0.00063 22.2 0.4 1 23 780 802 780 802 0.97 22 35 0.00052 0.096 15.3 2.0 1 23 808 830 808 830 0.99 23 35 0.00045 0.084 15.5 0.8 1 21 836 856 836 857 0.95 24 35 0.00046 0.086 15.4 2.0 1 21 936 956 936 957 0.95 25 35 0.014 2.5 10.8 4.4 1 23 1006 1028 1006 1028 0.97 26 35 0.0027 0.5 13.0 0.3 1 23 1048 1070 1048 1070 0.97 27 35 0.19 35 7.2 0.5 3 23 1076 1097 1074 1097 0.96 28 35 0.088 16 8.3 0.2 1 23 1103 1127 1103 1127 0.95 29 35 0.074 14 8.5 4.2 1 23 1133 1155 1133 1155 0.89 30 35 0.011 2 11.1 0.4 2 23 1162 1184 1161 1184 0.91 31 35 0.065 12 8.7 0.4 2 23 1196 1218 1195 1218 0.95 32 35 0.0025 0.47 13.1 0.5 3 23 1231 1251 1229 1251 0.96 33 35 0.12 23 7.8 4.2 1 23 1257 1279 1257 1279 0.91 34 35 2.5e-06 0.00047 22.6 0.5 1 23 1285 1307 1285 1307 0.99 35 35 0.0013 0.23 14.1 0.2 1 21 1313 1333 1313 1334 0.95
Sequence Information
- Coding Sequence
- ATGACGATGACAGAACTAGTTCCCATATACCCCTGGATGAGgattaaaaaagAGGACGAGAAACCTATCTTAAGACGAACTAGATCCAGTAACACAAAGAAAGAATTTAAAGAAGAAAGCGAAGACGAAGTTGATCTCTTATCTAGACTTAAATTCAAGGGAATTCCAAAAGACTTAGAGGACGACGACGAGGTGACGAAGAAAAAGAAGAAGTCACGAGTCTTCGGTGTTAAATCTTGGAGATGCGAACGTTGCCAAGAGGTTTTCTATGATTCGAAAATTTGGCAACGACACAAGCACCAAAGAGATTGTACGTTTGAACCGTTGAAAAGCAAGTGGACTGGCACTTCTAAAAGACCGTACAAGGTACGCGTATACACGTGTAAATATTGCGAGGAAGACTTTAAAACCTTAAAGTTACTGAAGATTCATAGGAAGACTCATAAGCCTGACATAGAGGAGCCTGAAGAGGAACCGCCAACGTACAAATTTGATAATCTCCAAGACCTTTACATATGTAGCGTGTGTTCGGCAGAGTTCCAAGAAGAATCTGAAGCTAAGGAGcatgtaaaaaaacatcaagaaatAATTACTTGTCACGAATGCAAAGAATCATTTAAAAGTTATTACGATCTGGGAATGCACTCTCCTACGCACGACCCACACCACAAAGTCCACTGTCCATTGTGTTCATATGTATCTTCCACTGCAAATAGCTACAGTTTTAAAGCTCACATAAACTACGTTCACTTAAAAAAGTTTCCATTTCATTGTAAGGATTGCGACAAAGGTTTTAAGCAATACAAGACTTATCGCGAGCATCAGAATGCTCACTCAGGAGAGAAACCATATGTGTGTATAGTCTGCCAAAAGGGGTTTACTCACCAGAAGTACTTGCAAGTTCACCAAGTAAGAAATCATCAGgttggtacTACTGGCAATAAAATCGAAAACGAATGTCGCACTTGCAACAGATACTTTTACAAACCCGAAGCGCTCAAAGAACACATTGacgtgtgctacaaaaaaaagaaagttaaaaGTGCTATTCCGGCTAAAGCGTTTCTTTGTGATACGTGCGGCCAGACATTCACCGAGAAAGCCAAGCTGTTGGAACATCTCAGAGTTCACAAGGGCGATCTTCCTTTCGTGTGCACGTGGTGCGGCAAACGGTTTCCCGTTAAGGCTTATCTAAAGACTCACGAGAGGGTTCATACAGGCGAGAAACCATATTCCTGCGAGTTTTGCGGGAAGAGATTTGGACAGCATGCGCCTTTTAGgaaaaatgttgcAAAAAAGAAAACCCTTTTAAATTCTAAACTTCGACGATCTACTCGACCGCGAGTCAAAAAATTAAGACCTCTAAAAGAAAGTGATGATGAATTTGATTTAAAGACACTAAACAAtgacaaaaaaacaaatattggaGCCAAGACTTGGCGTTGCGGTGCCTGTCAAAAAACGTTTCCCAAAAAGAAGTTTTACCATCAACACAAGTCAACTAACGATTGTCTATTTAAACCGGTTATACCGAAAATTAAAACAGAGAAATCCCCCAAACCACAACGCAAGGAAAATATACGGCATTGCAAGTACTGTAACGAACCTTTTGCCAACCTAAAACTCCTACGGGATCATAAAAAATCCCACAAGGTTGAAGAAATTCGGGAAGAGGACCCATCGTTTAAATTTGATGAGCTGCAGGATCTTTATATCTGCGAGGTATGTTCGGCCGAATTCCAAAAGGAAAACGAGGCAGAAGTTCACCTCAAAAGCCACATAACCGGTCTAAAATGTGAGGTCTGTCAAGCATGGTTCCGAACACCTTTTGAGTTAGGAATGCATTCGATTGTTCACGGTAACAAGTGCATTAAGTGTCCACTTTGCAACTACGTTAACAAAAGTGCCAATCAATACAGCTTCAAGGCACATCTCAACTATATGCACTTAAAACGATTTCCTTTTTACTGTAAAGAATGCGGGAAAGGATTCAAGCAATACAAGACATACAACGAACACCAAAACACCCATACCGGTATCAGGCCTTACGTGTGCATGGTATGCGAAAAGACGTTTACGTTTCAAAAATGTTTAGTGACGCATCAAGTTAGGAGCCATCAAGTTTCCACTAACGGGAACAGAATGGAAAACCAATGCCGCAGATGTCATAGGAACTTTAAAAACCCTGTGTCTATGCAAGAACATATGGACGAGTGTTACAAGAAACGCAAAAGCACGAAGAAGCCTAACTCTTTCCTCTGCGACACTTGCGGACAAGGATTCATCGAAAAGGCGAAACTTCAGAAACATATACGAGTCCACCAGGGTGTCTTACCTTTTGCATGTGAGTGGTGCGGCAAAAAATTTCCTCAAAAGGATTACCTCAAAACTCACGAACGGGTTCACACTGGCGAAAAACCTTACTCCTGCGAGTTTTGTGGAAAACGTTTCGGTTTTCACGCCCCCTTCAGGGTGCACATCCGGACTCATACGGGAGAGAGGCCGTACGTGTGCAATTTTTGCGATAAGGGCTTTACAACTAATCAGGGTTTGAAGCTgcacaaaaaaaattgtcctgAAAATCAGTTGAACAAAATGTTGAACTCGGAAGGGAGCGGgaaaaagcctccaataaaaataaaacttcgcACTAATCCCCGACGAGCCAGCACGAAAAAGTTGGATGAATTTCTTGATATCGTTAAACATTCTGTTAGCGACGACGATGAAAATTCTGTCTCTAAAGAAGAACAGCCAAGCCCTAGCAAAATATCTTCTCGTAGCAAAACGAAAAGCAAAACGCATTACGAATGCAAGAAGTGCACAAAAATCTTTACCACCAAGATCCAACTTGATAGGCATAAGAAAAAAGATGACTGTGAGTTTGCTATAACACTGCCAATAAAGGAAACTCCTGCCAAAAAGAAACAAACAGACTGCAAAATTCTTAAACACCATAAGATTAAATCCGAATATAAGGTTATCGTTACCACGACAGAAGATGGAGAGAAGGTATACCACTGCAAGAAATGCCCGTTGAAGTTTAACATGCTCAAAGACCTTAAACAACATAGAAAAGAACATGTTCCAAAGGAATTTATTGAAAAtcatactttttattttgatgACGCCCAAGAACTCTATATTTGCAATACATGCTCGGCAGAATTTAAAGACAAAGAGGAGGTGGAACGGCATACGAAAGCTCACGGAGAAAATTTTGGGTGTTCGTTGTGCGAAGAGAAATTTCAAACTTTGTTTCAGCTTGGAAGTCATTTAAAGATTACTCACAGCGATGATGACCAATTTAGTTGTCCTCTATGCCCCGACCTCAAATTCCCAAAACCCTCACTGTTTATGAAGCACATCGACATGAAGCATCAAAAACGATACATGTACACTTGCAAAGAGTGTGGGAAAGGATTCCACAGCAAAACTCTATGCAGAGAGCACGGCAACGTCCATCTTGGAGTCAAACCGTTCGCCTGCATAGTATGTGGCACAAGTTTTACTTACTCCAAATCCGTCACCACTCATCAGTTAAAAGCCCACAGAGTGGAGATTTTAGGTAAAAACCACGCCACCGAATGTTCGTTTTGTAGAAACAGGTTCGTATCCATAGCGTCCTTGGACCGCCATATTCGGCAAGTGCACTCGACTCCGAAAGCTCCGAAAGAAAAGATCCATCTATGCGATATCTGCGGAATGGGTTTCgctaagaaaaacaaaatggtagTCCATCAAAGGGTACACACAGGTGTAAAGCCTTACCCCTGCCGCCATTGCcctaaaagtttttctaaatcaGGAGAACGTAACTGCCACGAAAGAATCCATACGGGAGAACGACCTTACAGTTGCGAATATTGTGGGAAGGCCTTTAGACAAACTGCACCATTTAAAGTTCACATAAGAACTCACACGGGGGAAAGACCGTATGTGTGTGATATTTGCGTTAAGGGTTTTACCACGAACCAAGGGTTAAAGCTTCACAGAAAGAATTGTGGAAATATGGATCTTAAAGCGTTTTAG
- Protein Sequence
- MTMTELVPIYPWMRIKKEDEKPILRRTRSSNTKKEFKEESEDEVDLLSRLKFKGIPKDLEDDDEVTKKKKKSRVFGVKSWRCERCQEVFYDSKIWQRHKHQRDCTFEPLKSKWTGTSKRPYKVRVYTCKYCEEDFKTLKLLKIHRKTHKPDIEEPEEEPPTYKFDNLQDLYICSVCSAEFQEESEAKEHVKKHQEIITCHECKESFKSYYDLGMHSPTHDPHHKVHCPLCSYVSSTANSYSFKAHINYVHLKKFPFHCKDCDKGFKQYKTYREHQNAHSGEKPYVCIVCQKGFTHQKYLQVHQVRNHQVGTTGNKIENECRTCNRYFYKPEALKEHIDVCYKKKKVKSAIPAKAFLCDTCGQTFTEKAKLLEHLRVHKGDLPFVCTWCGKRFPVKAYLKTHERVHTGEKPYSCEFCGKRFGQHAPFRKNVAKKKTLLNSKLRRSTRPRVKKLRPLKESDDEFDLKTLNNDKKTNIGAKTWRCGACQKTFPKKKFYHQHKSTNDCLFKPVIPKIKTEKSPKPQRKENIRHCKYCNEPFANLKLLRDHKKSHKVEEIREEDPSFKFDELQDLYICEVCSAEFQKENEAEVHLKSHITGLKCEVCQAWFRTPFELGMHSIVHGNKCIKCPLCNYVNKSANQYSFKAHLNYMHLKRFPFYCKECGKGFKQYKTYNEHQNTHTGIRPYVCMVCEKTFTFQKCLVTHQVRSHQVSTNGNRMENQCRRCHRNFKNPVSMQEHMDECYKKRKSTKKPNSFLCDTCGQGFIEKAKLQKHIRVHQGVLPFACEWCGKKFPQKDYLKTHERVHTGEKPYSCEFCGKRFGFHAPFRVHIRTHTGERPYVCNFCDKGFTTNQGLKLHKKNCPENQLNKMLNSEGSGKKPPIKIKLRTNPRRASTKKLDEFLDIVKHSVSDDDENSVSKEEQPSPSKISSRSKTKSKTHYECKKCTKIFTTKIQLDRHKKKDDCEFAITLPIKETPAKKKQTDCKILKHHKIKSEYKVIVTTTEDGEKVYHCKKCPLKFNMLKDLKQHRKEHVPKEFIENHTFYFDDAQELYICNTCSAEFKDKEEVERHTKAHGENFGCSLCEEKFQTLFQLGSHLKITHSDDDQFSCPLCPDLKFPKPSLFMKHIDMKHQKRYMYTCKECGKGFHSKTLCREHGNVHLGVKPFACIVCGTSFTYSKSVTTHQLKAHRVEILGKNHATECSFCRNRFVSIASLDRHIRQVHSTPKAPKEKIHLCDICGMGFAKKNKMVVHQRVHTGVKPYPCRHCPKSFSKSGERNCHERIHTGERPYSCEYCGKAFRQTAPFKVHIRTHTGERPYVCDICVKGFTTNQGLKLHRKNCGNMDLKAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -