Ppte058685.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus pterygomalis
Gene Symbol
-
Assembly
GCA_963969555.1
Location
OZ018381.1:35400237-35419076[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0033 0.62 12.7 4.0 1 23 170 192 170 192 0.98
2 18 0.00018 0.034 16.7 1.8 1 20 198 217 198 220 0.94
3 18 8.6e-05 0.016 17.7 1.5 1 23 226 248 226 248 0.98
4 18 4.3e-06 0.00079 21.8 4.1 1 21 254 274 254 276 0.95
5 18 1.5e-05 0.0028 20.1 4.7 1 23 282 304 282 304 0.99
6 18 3e-05 0.0056 19.2 5.3 1 23 310 332 310 332 0.97
7 18 7.6e-06 0.0014 21.1 7.4 1 23 338 360 338 360 0.97
8 18 1.7e-07 3.1e-05 26.3 1.9 1 23 366 388 366 388 0.98
9 18 8.7e-05 0.016 17.7 6.7 1 23 394 416 394 416 0.97
10 18 3.3e-05 0.0061 19.0 7.0 1 23 422 444 422 444 0.98
11 18 6.2e-07 0.00012 24.5 3.3 1 23 450 472 450 472 0.98
12 18 2.4e-06 0.00045 22.6 7.8 1 23 478 500 478 500 0.98
13 18 5.9e-05 0.011 18.3 8.2 1 23 506 528 506 528 0.98
14 18 2e-05 0.0038 19.7 7.7 1 23 534 556 534 556 0.98
15 18 0.00011 0.021 17.4 6.9 1 23 562 584 562 584 0.97
16 18 6.2e-05 0.011 18.2 0.8 1 23 590 612 590 612 0.98
17 18 0.11 20 8.0 5.0 1 23 622 644 622 644 0.98
18 18 5.7e-07 0.00011 24.6 1.1 1 23 650 672 650 672 0.98

Sequence Information

Coding Sequence
ATGGAATCATCTATGGAGCATAATCAGCAACAGCAGTCTCACAACGAGCAACAAAATACGATGCAAGATAACATAGAAATAGTAAAAGATGAAAAATCAATCCAATGCAAATTCCTTAATAATGCTCAATTGGGCCTTCAAGAAGTAAAAGGCAATATTATGGATGTACGAACTGCGGATGGAAGCATAGttaaaatacaGACAAATATGCAGGAACAAGAGTTAGCAAAAACTTTAGGCGTTGAGATGGTTCAAAATATGTATAAAGTAAATGTCGATGATTTGAATCAGTTGTTAGCATATCACGAGATATTTGGAAAGTTACAGTCTCAGGgtgaGGTATCAAATAATTCGAATCAAAATTTAACCACAAACAATTCAAATAACAATACTGTCAACATACAACAAAACCCTTCAAACATAGCCATTATTGCTAAGGATGAACATGAACCCAATACAAGTACCCTTCAACAGAATGAAAACGCGACGTCTGTTATAACTGGCAATCATCAGTGTGATCTGTGTTTAAAGACGTTTCAATTCCGCTACCAACTTATTGTGCACCGACGCTATCACAGCGAAAAGAAACCTTTTACTTGTCAGGTGTGTGGTAAGGCTTTCCCGAATAATCAGGAACTATCTAGGCATGGAAAATGTCATTTAGGGGGTAGCATGTTTACGTGTACCATCTGTTTCCACGTCTTCGCCAACGCACCAACTCTGGACAGACATATGAAAAGGCATTCGACCGACAAACCGTATGCTTGTACAACCTGTGGCAAAACGTTTGCTAGGAAAGAACACTTGGAAAATCATATGAGATGTCACACGGGTGATACTCCGTATAGGTGCCAATTTTGCGGTAAAAATTTTACAAGGAAAGAACATATGGTTAATCACGTGAGAAAACACACTGGGGAAACTCCTCACAgGTGTGAAATTTGCAAAAAGTCTTTTACGAGAAAGGAACATTTTATGAATCATGTAATGTGGCATACTGGAGAAACTCCGCATTGTTGCAGCATATGTGGTAAAAAGTATACTAGGAAAGAGCATCTTGCAAACCACATGAGAAGTCACACTAACGACACTCCATTTAGGTGTGAAATTTGTGGTAAAGCATTTACAAGAAAAGAACATTTTACCAATCACATTATGTGGCACACTGGAGAAACTCCCCATCGTTGTGACTTTTGTTCGAAAACTTTTACTAGAAAGGAACATTTATTAAATCACGTGAGACAGCATACGGGTGAATCGCCACATAAATGTGTGTTTTGTAATAAATCCTTTACGAGGAAAGAACATTTGACAAATCATGTTCGGCAACATACAGGAGAGACTCCATTCAAATGCACCTTCTGTCCCAAAGCTTTCACCAGAAAAGACCATTTAGTTAATCACATACGACAACATACAGGTGAATCTCCCCACAAGTGTACTTACTGTACAAAATCGTTTACTAGGAAAGAGCATCTCAATAACCATATAAGACAACATACGGGTGAATCGCCCCACAAGTGCCATTTTTGTGCGAAATCTTTTACGAGAAAAGAACATTTGACGAATCATGTCCGAATACATACAGGCGAATCGCCGCATCGTTGTGAATTTTGTCAAAAAACCTTTACGAGGAAGGAACATTTGACGAACCATCTACGACAGCATACAGGAGAAACTCCCCATTGTTGTAATGTATGTTCGAAGCCTTTTACTAAAAAAGAGCATCTGCTTATTCACATGCGATCGCATACTGGTGAAAGACCTTTTAGTTGTACCGAATGTGGAAAATCTTTCCCACTTAAAGgtaatctaTTATTTCACCAACGCTCCCATAACAAAGGCCAACAGGCAGACAGACCTTTTCGGTGTGACCTATGCGAAAAAGACTTTATGTGTAAGGGCCATCTAGTGTCTCATAGGAGATCTCACGGTGGCGAAAAACCGTTTACCTGCACGGAATGTGGCAAATCATTCGTAGAGAAAGGTAATCTTTTGAGGCACAGCAGGAAGCACATTTTAGATAGGGAAAAGGCCAATTTAGCTGAGAATATGACTACGCAAAataatGCGCCACAACCTAATGAAAATCCAAACAATCTTCAGATCTCACAAGTCCAAGTGAGTCAGACTCCTCAGCAACAGCCGTCTTCAAACAGCAATATTGTACAGAGCGGACATTTGATGCACACCTCTAACCACCATTCTGTTGTAGTACCTACTAATGGTAACGTTTTAGCTACCTACTAG
Protein Sequence
MESSMEHNQQQQSHNEQQNTMQDNIEIVKDEKSIQCKFLNNAQLGLQEVKGNIMDVRTADGSIVKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQSQGEVSNNSNQNLTTNNSNNNTVNIQQNPSNIAIIAKDEHEPNTSTLQQNENATSVITGNHQCDLCLKTFQFRYQLIVHRRYHSEKKPFTCQVCGKAFPNNQELSRHGKCHLGGSMFTCTICFHVFANAPTLDRHMKRHSTDKPYACTTCGKTFARKEHLENHMRCHTGDTPYRCQFCGKNFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHCCSICGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCVFCNKSFTRKEHLTNHVRQHTGETPFKCTFCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTKKEHLLIHMRSHTGERPFSCTECGKSFPLKGNLLFHQRSHNKGQQADRPFRCDLCEKDFMCKGHLVSHRRSHGGEKPFTCTECGKSFVEKGNLLRHSRKHILDREKANLAENMTTQNNAPQPNENPNNLQISQVQVSQTPQQQPSSNSNIVQSGHLMHTSNHHSVVVPTNGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-