Ppte076634.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018385.1:54113465-54123910[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00032 0.06 15.9 4.6 1 23 95 118 95 118 0.96 2 20 0.89 1.7e+02 5.1 1.5 2 23 222 244 221 244 0.95 3 20 0.00045 0.084 15.5 4.6 1 23 250 272 250 272 0.99 4 20 9.3e-06 0.0017 20.8 0.4 1 23 278 300 278 300 0.98 5 20 9.5e-06 0.0018 20.7 3.5 1 23 306 329 306 329 0.94 6 20 6e-07 0.00011 24.5 0.7 1 23 337 359 337 359 0.98 7 20 0.00061 0.11 15.1 4.4 1 23 365 387 365 387 0.98 8 20 2.1e-07 4e-05 25.9 1.4 1 23 393 416 393 416 0.98 9 20 4.2e-05 0.0078 18.7 0.3 3 23 432 452 431 452 0.99 10 20 2.5e-05 0.0046 19.4 1.2 2 23 459 481 458 481 0.97 11 20 0.0016 0.3 13.7 2.4 1 23 563 586 563 586 0.96 12 20 9.6e-05 0.018 17.6 2.2 1 23 688 711 688 711 0.96 13 20 0.0017 0.31 13.7 1.0 1 23 717 739 717 739 0.99 14 20 6.6e-06 0.0012 21.2 1.2 1 23 745 767 745 767 0.97 15 20 2.4e-06 0.00045 22.6 1.9 3 23 775 796 773 796 0.93 16 20 1.5e-06 0.00028 23.2 0.2 1 23 804 826 804 826 0.98 17 20 1.7e-05 0.0032 19.9 2.2 1 23 832 854 832 854 0.97 18 20 0.00088 0.16 14.6 0.9 1 23 860 883 860 883 0.98 19 20 3.9e-05 0.0072 18.8 1.0 1 23 897 919 897 919 0.97 20 20 0.00013 0.025 17.1 1.1 2 23 926 948 925 948 0.97
Sequence Information
- Coding Sequence
- atgtcGGAAATATGTTGCATTTGTCTTGAAAAggctatttttttccaaaaagttgTGGAATGTGTATTCGATACAGTAAAGTGTATTGTAAAGTTAAATACTTGTTTTCCCAATGAGGTCTGGGAGGAATCCTTTAATATCTGCAATGAATGTGTAGATAAACTCGATAGGGCATACAGTTTCGTACAGTTATGCCTTAAAAGTCAGGAATGGCGAATGGAACAGTCACGACTTATAGAAATTAAACAGACTGAACAGTCTAAAGAAGAATTAACAAATGATTTTACTTGTCACCACTGTGGCAAATCTTTCAGaTTGAAACGTACTCTAGGTCTTCACATCACAAGAATTCACACTAAaccgaaaaaaaatgtaaaaagaaaGTCCGCAGTGGTAAAATCTGAATTTGCtgaaaatgatattaaaataGAATATAATGATTTAGATCTATGTCTAGCAGACAATGAAGAATTTAAAACAAGAAGCAAGAACAAAGTTAAGTCAGGAAGTGGTAAGGAAAATGTTGAAGATTCATCTGATATCACTGATTTTGAAGATATTGGCAAGGATGACTTTAGTAACTACTCAAGtGAGGATgatatatttaaagaaaagaaACCTTACAAAGGGAAAAAACGAGGCCCAAAATGTAAAGGCCCCATTCAGTGTGAATTTTGTGAACTTGTTTTTATGAGAAATGACAAGCACATACAACATGTCAGGTCGAAACATACATTTGAAAAACCTTTTAAATGCAACTTATGTGATGCTAAATATTTCAGCCAGCACAATCTCAAAATACACACAAGAAAGCACACAAATGAGAAGCCATATGTTTGTTCGACTTGTGGAAAAAGTTTTATCTCCTCAAATGATCTTTGGCAACACAACAAAATTCACGAAAAAGTGAGGCAGTACCCGTGCAATGAATGCAACAGAAGCTTTAAGACTCATAGTAACTTAAGaaCTCATAAACTACAGATGCATCAAGACCCAGGAATGTGGAAATTTGTTTGTACAGTGTGTggaaaaaaatttccactgaATAATAATTTGGTCAAACATATGCGGCGACATGAAGGTATCAAACAATTCTCCTGCCACCTTTGTCATAAGAAATTCGTGGAAAAGATAGACCTTCAAACGCACCTTCTGAGTCATTCTGATGAACGTCTTTACAAGTGCAATATTTGTGGAAAAGCTTACAAGAAAAGCGAGACACTCAGAAGacatttaaaaactgaacatgATATTGGCAACTTTATAGTGAAGAAAccggaaaaaaagttattatgtCCCATGTGTCCAAAGATATTCGCATTCAACAACAAACTTCAAAGGCATATTTTGACCCACACGGGAGAAAAACCGGTCAAGTGCGAGTACTGCGACAAGAAATTTCGGGACAACTACgatagaaacgttcatcttagGAAGGACCATCAGAGTGTTAGCGAATGTGTTTTTGGCAACGTTAAATATATTGAAAAGTTAAATATTTGTGTTCCTAATGAGCTCTGGGAAGAATTCTTTAATATTTGCAATGACTGTGTTGATAAACTGGATGGTGCCTACAATTTTGTTCAGCTATGTATTAAATCTCAAGAATGGCGAAAAGAGCAGGTGACACTTATAGAATTGAAGAATTCCCTCTCAATAAGGCCTAAAGAGGAATCCTCCACTGGTTTTACTTGTTATCAATGCAGCAAATCATTTAGattaAAACGTACATTAAGCATCCACATAACCAAAATACACACTAGATCAAAAAAAACCATAAAGAGAGAATCCCTGGAGAATAAATCTGCATCTGATATTGACAGTGAAACTAGAAAAGATGAGAATCGAAAAATAATAGATACTTGTTTAGAAGATAAGAGAAAATTGGTAATTCTAAATGAAAAATTAGGAATTAAAGATGAAAAAACATATaagttagaaaataataattccagTGGCAATGAAGATAATGATCATGATAATACTTATTTAAGTGAAGAAGAAATAGAAGAAAAGAAACCGCGTAAAGGGAAAAAGCGAGGCCCCCCAACCAAAGGCCCCTTCAAATGCGATTCTTGTGACCTAGTTTTTAACCGACCCTACAAACTTAAACATCATGTTAGGGCAAGGCACACCTTTGAAAGGCCCTTCAAGTGTGAATTGTGTGACGCAAAATACTTAAAACGGGATTCCCTGAACGTCCACATGAGGAAGCACAACAATGAGAAACCATTCATATGTTCGACGTGCGGCAAGAGCTTTGTTACATCGAGTGATATCACACGTCACAATAAAACACACGAGGAAGTGAGACAGTACGGGTGTACTGACTGtgataaaagttttaaaaccaAAAGTAATTTACGGACCCACAAACTACAAATGCATCAAGATCCCGGAATGTGGAAATTTATCTGTACAGTTTGTGGTAAAAGATTTCCATTAAACGACGCGCTTGTGAAGCATATGCGGCGACATGAAGGTATCAAAGACTTTGCTTGTCACCTGTGcaataaaaaattcacagaaaACGGCGAGCTGCGCAGACATCTGCTCAGTCATTCTGACGAACGCAACTTCAAATGTAACATATGcgaaaaagcgtacaagaaaaAAGAAATTCTCAATATACACTTGAAGAGGGACCACGGTATCGGGAATTGTGTAATAAGGCAACCAGAGAAGAAATTTGCTTGTCCTTTGTGTCCAAAGGTGTTTGCGGTCAACCACAAATTGAAAAGACATTTTTTAACGCATACTGGCGAGAAACCGGTGACCTGTGAGTTTTGCGACAAAAGATTCCGGGACAATTATGACAGGAATGTTCATTTACGAAAAGACCATAACGTCGAGCCCAAAACCTTGATGTTTCCTTAA
- Protein Sequence
- MSEICCICLEKAIFFQKVVECVFDTVKCIVKLNTCFPNEVWEESFNICNECVDKLDRAYSFVQLCLKSQEWRMEQSRLIEIKQTEQSKEELTNDFTCHHCGKSFRLKRTLGLHITRIHTKPKKNVKRKSAVVKSEFAENDIKIEYNDLDLCLADNEEFKTRSKNKVKSGSGKENVEDSSDITDFEDIGKDDFSNYSSEDDIFKEKKPYKGKKRGPKCKGPIQCEFCELVFMRNDKHIQHVRSKHTFEKPFKCNLCDAKYFSQHNLKIHTRKHTNEKPYVCSTCGKSFISSNDLWQHNKIHEKVRQYPCNECNRSFKTHSNLRTHKLQMHQDPGMWKFVCTVCGKKFPLNNNLVKHMRRHEGIKQFSCHLCHKKFVEKIDLQTHLLSHSDERLYKCNICGKAYKKSETLRRHLKTEHDIGNFIVKKPEKKLLCPMCPKIFAFNNKLQRHILTHTGEKPVKCEYCDKKFRDNYDRNVHLRKDHQSVSECVFGNVKYIEKLNICVPNELWEEFFNICNDCVDKLDGAYNFVQLCIKSQEWRKEQVTLIELKNSLSIRPKEESSTGFTCYQCSKSFRLKRTLSIHITKIHTRSKKTIKRESLENKSASDIDSETRKDENRKIIDTCLEDKRKLVILNEKLGIKDEKTYKLENNNSSGNEDNDHDNTYLSEEEIEEKKPRKGKKRGPPTKGPFKCDSCDLVFNRPYKLKHHVRARHTFERPFKCELCDAKYLKRDSLNVHMRKHNNEKPFICSTCGKSFVTSSDITRHNKTHEEVRQYGCTDCDKSFKTKSNLRTHKLQMHQDPGMWKFICTVCGKRFPLNDALVKHMRRHEGIKDFACHLCNKKFTENGELRRHLLSHSDERNFKCNICEKAYKKKEILNIHLKRDHGIGNCVIRQPEKKFACPLCPKVFAVNHKLKRHFLTHTGEKPVTCEFCDKRFRDNYDRNVHLRKDHNVEPKTLMFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -