Pcer038615.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001390.1:129044-139231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.011 17.4 0.6 2 23 394 416 393 416 0.95 2 13 4.8 4.9e+02 2.8 0.1 3 21 424 442 422 443 0.91 3 13 0.015 1.5 10.7 6.4 1 23 540 563 540 563 0.96 4 13 0.018 1.9 10.4 1.3 2 23 570 592 569 592 0.93 5 13 0.011 1.2 11.1 3.6 1 21 694 714 694 715 0.95 6 13 0.018 1.8 10.5 0.9 2 23 727 749 726 749 0.94 7 13 0.076 7.8 8.5 0.5 1 23 752 775 752 775 0.96 8 13 0.19 19 7.2 0.3 2 23 807 829 807 829 0.95 9 13 0.37 38 6.3 0.5 2 23 836 858 835 858 0.91 10 13 0.049 5.1 9.0 0.5 2 23 867 889 866 889 0.94 11 13 0.0051 0.52 12.1 0.1 3 23 896 917 895 917 0.97 12 13 7.8 8e+02 2.1 4.9 3 23 1091 1112 1090 1112 0.95 13 13 2.4 2.5e+02 3.7 0.7 1 23 1154 1176 1154 1176 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTGAAGCTCTGTAGGATATGCAGACAAAGTGGACATGGTTTCATACACATATTCAAGACAGAaggattgaaaaataaaatagaaacatgCCTTCCGATAATTatttctCCACACTGCTTACTTCCAGAAACTCTATGTCCAGAATGCCTAAAAAACATcgaaaacttttatgttttctTGAAAAATTGCCTCCAGAACATTATCATACTTGAATCGCAACTGGATATACAAGATTCATGCCTaagaacaaaaagaaaaaaggaCAAGGGGTGTTCTGTTGAACTGCCTATTTCTAATTGTAATAAGAGTGTTCAAACCGAagattttttagatgttttacttGGAAATAAGTCAGTATTTAAGGATTATGAACAAGATTTTCCCTTAACAAATGATTTCTTTAATAGAGAAGTTAAGAAATATGACTCTCATAACATCCTTGTTGATTATGAAGTACTTTCTGAATCAAATTCCACTGATTATGAAGGTAATTCAAACACTGGACAAGTAGTTTttggggaaaaaataaaaaatatgaatcatTTCAACAATTTAGTTgataatttgttgtttaaaaataggCCTACAGATTTTGCCAGGCCCTACAATGAAAGAGAAAATAAAAGTCTTATCTCTGAGATATCCGAAAGGAAGAACTTAAAGAAGCGTAGAAGTGAAAGTATTGAAAATtcatcaattaaaatttgtaaatttgatTCTGGTAATAAAAGGAAATGTAGTAAACCAAAAAAAGTAGAAAAGAGTTGTGATAAAAGTAGAGAAGAAAATGAAATGCAAGTCCCTGAAATAAAAATAGAGGTGGAAACTGACGATTTTGAGGATCAAGAAAATGTACATTTGCATAGCAAAAAAAATGTGAGAAATGAAAAGAGCAATATACCAGTGCCCATTGAGACTTGTCTActgtgtaattttaaaatttgtgatagTACCTCCAGTTTGGCagaacattttgtaaaaattcaCGCAAGGGAATATCCTCAACAAAACACAGAAACCTTGACTAGTGGCATTGAGGCGATAAccgagaaaaagaagaaaaatttgCCAAGCTTGGttaagatttctgatttaaaaagaagtgaATCTATtgATGATGCCCCAGTATTAAGCCACCCCTCAGAGGAACCTCCAATATCACCCCTTAAAATCACCTGTCCAAATTGCCCTACATCTTTCACCACCAAAACTGAACTTTTTATGCATTTACAACTGAAACATTCCGATATTTCTACTCATCTTTGTGGGATTTGTCTCAAACAAGTAAACTCggtaataaatttgaaaaaccaCGTTCAGaattgttgtaaaaatagaACTGTCGAGACACGGTATGTTTGTGAAATCTGTTCTTTTGGAGAGGACAACTATAGGACTATGGAGAGCCATGTGTTGATGCATGGGTTTTTGTTGGAGAACTGTAGAAAAGAGGTAAGAAATTTCGATCCAGAAGACTACATTCAAATAAATACAACTTTCCAGCAAAACGGGGCGACGCCAGTCAAAAATCCTGCCTGTTCTGAATGTAACAGGTCCGATTTTGATTCATTCGGGAAGTATTCCCTTCACAGAAAAAACGTACATTCCATCTACCATTGTGACTTATGTAATAAGTACTATGGAAGGAACTCACACCTCTGGAAACATGTCCACAGACTTCACAAGGGTCATCCAAGTATCACGTGCCAAATCTGTTTTAAGACGAGCGCGTCGAAGTATCATTTGGCGCAACATTTCGCAAAAATTCACCAACTAAAGACGACCGTCAAAAAGGAAGATATCGATTTTGAAAATGATTACAATGACGCTCAGAAGTTTGATGAAATGGATTTTACCAACAATGCAAAGATCCCCATCATAAAGAAacaaGATTCTACCTCCGACCAAGAACCCCAAAACAGTTCCTACGACGAAACCTCTCAGCACCAATTCAGCCAGTCAGACAACGACCTTTCGTTGGACGTCAGAATAGCGCCTAAGGAGATTGATCCTTCCCACGACTTGTATACTAACATTCTAACCAATTACAATCCCCCTAAGAACGAGGGGAATTTTAAGTGCCCTAAATGTTCCAAAGGCTTTCATAAAAGAATGTTGTTGAGAAAACACAAGAAAAATTGCaggCCAAAATTACAAAAAGACCTTCTTACAAGATGCAAATCTTGTGCGAGAATTTTTAAAGATCGACAGAGTCTCGCCAAACATCTGATCAACTATCATTCAGACTACGTGTGTGAAATATGCAATGAAAAAGTGCCTAGCAAATGTGAAATTGTCACTCATATAAGatttcaaCATCCTTCAAGTCATTTAGTTTGCAGCGTTTGTGAAAATATCTTGAGGTGTAAGAAGGAGTTGCTGGACCATCTAGGGGACCACGAAAATTCCAATGTTTGCCAATTTTGTGGAGATACCTTATCCAGCAAAgtaaaactaAAAATGCACATTCTAAGCCTCCACAGAAAAATTCTCAGTTTGAGCTGCGGAATTTGCCTCAAACTCTTCGAAAATCAACACGTTTTAAGAAATCACGTTACCTTAGTTCATAAAGATCAATTGGATTCTCTCACATCTTGTCCAATCTGCGGAAAAAACTACGGCTCCAAATGGAAGACGTTCGATCACGTGAATAAGAGTCATGGAAGGATTTTTAAGGCCTGCAAGATATGTCTGGAAATATACGAAACTGAATCAGAACTTGAATCTCACATTAAAACTACCCACCTAAATCAACAGATTGCAGTGAGTAGTCAAGTTAAACCAAATCCTGTTGCCATCTTAAACGTTCCAGTGAAAAATGACGTGCCTTTACTGAATCTAAACAACAATCGGAATGATTTTGAGAGCGATAGCGAAGGGAATACTGAAGAGACTGAAAATAATACTCAGAGTAGTGATAGTGAGGatgaaGAAAACAGCGGACCAGGCCAAACAGGAGTACGAAAATTGCCTGTAGATAACAATTTTTTATCCAGTCCAAGCCAAGAAAATAAGATTTCTTTACTAGAAAGAAGACTTTTGGGGAAAACTGTCACCCAGAGCAACATTACCAATAAAAAATTCTCTGGAAGCAATTCTCACAGCAAGCACCTTATTGACAATGGTGATATGAAGAAAGAAAACTCGGTgttaccaaaaattaaaaaggaagACAATTTGATCAGCGATAAGAAAAGCTACAGCAATAATTCAATTCATCATTCAAAGAGAACTGTGTATGTGAACAGTAATGACCCTTCGTTTTGTGAGATATGTCACAAGACGTGGCCGGCTAAAAAACATTTGTGGCAACATTACATCAGATGCCATAAGAAAATTGCGGCAACTGTATGCGGAATATgtcttaaaacaaacaaaaactaTGAAATTCTACAGTTACATCTCAGAGAAATGCACCCGACTCTGTTACATGGACAAGGGATTGGATCGAATTTTATTTGCAGGATTTGTGGAAGGTATCACAATGCCAGCTCAAAGTTGAGCCTTCACATGGTTATTCATGAAAATTTCGACTGGAAGTTGCTGGATCGATTTCCGCCGATTTTGAAGTATCAGCCAAACGTGAAAAATGCCTCGAAGCAAAACGGACAAAAACGAAATGGAAATGGCAAGGTTATTAATGGAAATGAATTGAAATATGAACCAGAAAAGGTAAAAAGCGAAGTTgatatttttactgaaaatgACGAAATGTATGATGATATGATAGAACAGGTCGAAGAATCCACTTCTTCTAGCGAGATAGAGATGACAAACAAGCCTCaagattCTACTACTGATTCAGAAGATAACAACGCTGTTCATGCTCAAACATACAATACCGCTAGACAAAATAAGGCGCCCCAAAGTACCGAAAACACCCTTTCTTTCAGTAACCTTCTACAAACCCTAAAAAACCACAATcagtttcaaattttaaatcggATCGATAAGAATTCTTTGCTCAATGTTGCCAGTTCTTCAGATAACGCTTCCGAAACCAATAGTGCTTCCAAAAATATTCCAAACAAAAATTCCAGTAATTTTTCGAGTATCCCTGCTAATAAAATTCATGAATTAGATCATAGATATGCTAGTTTGAGTAATGTTTCTAGTGCAACGCCAAAAGCATCGCCACAGCCAAGTATCTTGGGTAAAGTCTCAACTTATACAGCACAAGCAAAGATTTTAAGTAATAATACCAGTAATCATGCTCAAAATTTAAATACTCATGCTTATGATATCTGTACTCTTGCTCAAAATGCCCAGTACATGAAACATAGTTATTTAAGTGAGGAATCTTCCACAAATATGAGCGATTGTGGACAATATAGCGGTGATAACAGTCAAGATGACGGTCAGAATAGTCAAGATGATGGTCAGAACAGTCAAGATGTTAGTCGGAATAGTCAAGATGGTTGTCGGAATAGTCGAGATGACGGGCATAATAGTCAGAGTTCGGTTTTAGTAGAAGATTTGACCCAGGAATCATATGAATGTGACAGAAGTGGTGACGGAAAGGTCTTGGAACAAGATGGTCACGTTTCTAGAAATCTTTTAAGACTAAAACCTGAAGAATTGGATTCGGCAATCAAGTCTATAAGCGACCCGTGTACAGAGCCAGTCCTTATAATGAGTTACAATGATTTTTCTGAACCTATACAGTCAAACAACTGCCTAAATGAGACGGAGATTGAAAATGCCGTTGGTAGTATACTctag
- Protein Sequence
- MEVKLCRICRQSGHGFIHIFKTEGLKNKIETCLPIIISPHCLLPETLCPECLKNIENFYVFLKNCLQNIIILESQLDIQDSCLRTKRKKDKGCSVELPISNCNKSVQTEDFLDVLLGNKSVFKDYEQDFPLTNDFFNREVKKYDSHNILVDYEVLSESNSTDYEGNSNTGQVVFGEKIKNMNHFNNLVDNLLFKNRPTDFARPYNERENKSLISEISERKNLKKRRSESIENSSIKICKFDSGNKRKCSKPKKVEKSCDKSREENEMQVPEIKIEVETDDFEDQENVHLHSKKNVRNEKSNIPVPIETCLLCNFKICDSTSSLAEHFVKIHAREYPQQNTETLTSGIEAITEKKKKNLPSLVKISDLKRSESIDDAPVLSHPSEEPPISPLKITCPNCPTSFTTKTELFMHLQLKHSDISTHLCGICLKQVNSVINLKNHVQNCCKNRTVETRYVCEICSFGEDNYRTMESHVLMHGFLLENCRKEVRNFDPEDYIQINTTFQQNGATPVKNPACSECNRSDFDSFGKYSLHRKNVHSIYHCDLCNKYYGRNSHLWKHVHRLHKGHPSITCQICFKTSASKYHLAQHFAKIHQLKTTVKKEDIDFENDYNDAQKFDEMDFTNNAKIPIIKKQDSTSDQEPQNSSYDETSQHQFSQSDNDLSLDVRIAPKEIDPSHDLYTNILTNYNPPKNEGNFKCPKCSKGFHKRMLLRKHKKNCRPKLQKDLLTRCKSCARIFKDRQSLAKHLINYHSDYVCEICNEKVPSKCEIVTHIRFQHPSSHLVCSVCENILRCKKELLDHLGDHENSNVCQFCGDTLSSKVKLKMHILSLHRKILSLSCGICLKLFENQHVLRNHVTLVHKDQLDSLTSCPICGKNYGSKWKTFDHVNKSHGRIFKACKICLEIYETESELESHIKTTHLNQQIAVSSQVKPNPVAILNVPVKNDVPLLNLNNNRNDFESDSEGNTEETENNTQSSDSEDEENSGPGQTGVRKLPVDNNFLSSPSQENKISLLERRLLGKTVTQSNITNKKFSGSNSHSKHLIDNGDMKKENSVLPKIKKEDNLISDKKSYSNNSIHHSKRTVYVNSNDPSFCEICHKTWPAKKHLWQHYIRCHKKIAATVCGICLKTNKNYEILQLHLREMHPTLLHGQGIGSNFICRICGRYHNASSKLSLHMVIHENFDWKLLDRFPPILKYQPNVKNASKQNGQKRNGNGKVINGNELKYEPEKVKSEVDIFTENDEMYDDMIEQVEESTSSSEIEMTNKPQDSTTDSEDNNAVHAQTYNTARQNKAPQSTENTLSFSNLLQTLKNHNQFQILNRIDKNSLLNVASSSDNASETNSASKNIPNKNSSNFSSIPANKIHELDHRYASLSNVSSATPKASPQPSILGKVSTYTAQAKILSNNTSNHAQNLNTHAYDICTLAQNAQYMKHSYLSEESSTNMSDCGQYSGDNSQDDGQNSQDDGQNSQDVSRNSQDGCRNSRDDGHNSQSSVLVEDLTQESYECDRSGDGKVLEQDGHVSRNLLRLKPEELDSAIKSISDPCTEPVLIMSYNDFSEPIQSNNCLNETEIENAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -