Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010000399.1:182919-203831[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.98 1e+02 5.0 0.1 8 23 108 123 107 123 0.93

2 9 0.00025 0.026 16.2 1.9 3 23 130 150 129 150 0.99

3 9 0.0074 0.76 11.6 4.1 1 23 163 185 163 185 0.97

4 9 0.028 2.9 9.8 1.5 1 23 190 213 190 213 0.93

5 9 9.7e-06 0.00099 20.7 3.2 1 23 218 240 218 240 0.98

6 9 0.002 0.21 13.4 3.4 1 23 246 268 246 268 0.96

7 9 0.00093 0.096 14.5 2.5 1 23 274 296 274 296 0.99

8 9 3.1e-05 0.0031 19.1 0.2 1 23 302 324 302 324 0.97

9 9 0.18 18 7.3 0.1 7 23 336 352 331 352 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.98	1e+02	5.0	0.1	8	23	108	123	107	123	0.93
2	9	0.00025	0.026	16.2	1.9	3	23	130	150	129	150	0.99
3	9	0.0074	0.76	11.6	4.1	1	23	163	185	163	185	0.97
4	9	0.028	2.9	9.8	1.5	1	23	190	213	190	213	0.93
5	9	9.7e-06	0.00099	20.7	3.2	1	23	218	240	218	240	0.98
6	9	0.002	0.21	13.4	3.4	1	23	246	268	246	268	0.96
7	9	0.00093	0.096	14.5	2.5	1	23	274	296	274	296	0.99
8	9	3.1e-05	0.0031	19.1	0.2	1	23	302	324	302	324	0.97
9	9	0.18	18	7.3	0.1	7	23	336	352	331	352	0.93

Sequence Information

Coding Sequence: ATGTGTGAAGATTGTATTCAGCAAATGTACCAGACatataattttatgtcaaaatGTAAGAGTTCCGAAAaggtcttaaaaaatattttattgaaagagTCACAGAAAGATTCACTGGATAACTCAACCCTAGAAACAATTTTGAATGATGaacaaaacataaatattgATGATCATATAGATAGCAAATTCGATGATGAAGTGGATATTGAGgataatttattaaacaatgaAGTTGATAATTGTTCTGATGTTGATGATTTAGCTGAGGTAAAAAGTGAAGCCTATAATATTGAAGAAAAAACCGAGGATACTAATCCTGAAaGATTTACTAGACCAAGGTATGTCAAGGATCACGAAAGAAAACATACCGGGGAACCAATACTATGCCCATTTTGTGGAAAATGTTTCTATTCGTATGCTACTTTGTATTATCACGAGAAGACCCACAAAGGACCTTCAGATCCCACTGCTAAAGACCATCTATTTCGGTGTCATTTATGCGATAAAGTTCTTTTGAGCAAACATACTTTAAAAACTCATATTTTGCTACATGGGCCTAAAAACTTTAGCTGTGAGTTTTGTGGGAAAACACATATTAACAAACAACGATTGCAAAGTCATATTATAGCAACCCATCAAGaagaTAAATTTTCATGCCACCTTTGTGATAAAAAGTACAAACAAAAATCCGGATTAGTAGATCATTTAAAATCTCATTCTGGACAGAACCAGTACCTTTGTAAAACGTGCGGTAAGCGGTTCGCATGTAAAGGGTCACTACGCCAACATAATAGAATTCATACAGGTGACACCACTTATCAGTGTAAAGAATGTTTACAAATCTGCCTCAACAAGCGTAATTTGGAGATTCACATGCGCACTCACACGGGCGAGAAGCCGTTTGCTTGTGAGTTTTGTGGAAAACTTTTTGCCGGCCAAAGTAACATGATGGTGCATTTAAAAACTCATATAAGGGAAAATAAAAGCGTGTGTAAATTGTACGACAAATCTTTTTTTGACGCAAGAGGACTCAAGAAACATCTGACTATTCATGTAAAGAACGGCGATAATGGAATATAG
Protein Sequence: MCEDCIQQMYQTYNFMSKCKSSEKVLKNILLKESQKDSLDNSTLETILNDEQNINIDDHIDSKFDDEVDIEDNLLNNEVDNCSDVDDLAEVKSEAYNIEEKTEDTNPERFTRPRYVKDHERKHTGEPILCPFCGKCFYSYATLYYHEKTHKGPSDPTAKDHLFRCHLCDKVLLSKHTLKTHILLHGPKNFSCEFCGKTHINKQRLQSHIIATHQEDKFSCHLCDKKYKQKSGLVDHLKSHSGQNQYLCKTCGKRFACKGSLRQHNRIHTGDTTYQCKECLQICLNKRNLEIHMRTHTGEKPFACEFCGKLFAGQSNMMVHLKTHIRENKSVCKLYDKSFFDARGLKKHLTIHVKNGDNGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -