Pcer034568.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- ZFY
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001080.1:25024-41182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0013 0.13 14.1 0.1 3 23 2 22 1 22 0.92 2 17 0.0027 0.28 13.0 3.1 1 23 28 51 28 51 0.91 3 17 1.9 2e+02 4.0 0.2 1 20 124 142 124 145 0.71 4 17 1.9 2e+02 4.0 0.2 1 20 176 194 176 197 0.71 5 17 5.2 5.3e+02 2.7 1.0 1 23 228 249 228 252 0.70 6 17 0.00027 0.028 16.2 1.2 2 23 258 279 257 280 0.95 7 17 0.00077 0.079 14.7 0.1 1 23 285 308 285 308 0.96 8 17 9.9e-05 0.01 17.5 2.1 1 23 355 378 355 378 0.92 9 17 2 2e+02 4.0 3.6 1 23 384 407 384 407 0.92 10 17 4.3 4.4e+02 2.9 0.2 2 23 473 496 472 496 0.82 11 17 0.036 3.7 9.5 3.1 1 23 540 563 540 563 0.95 12 17 0.027 2.8 9.9 1.9 1 23 569 592 569 592 0.95 13 17 0.52 53 5.8 0.1 3 23 629 650 627 650 0.92 14 17 1.2e-05 0.0012 20.4 1.9 1 23 655 677 655 677 0.99 15 17 0.00016 0.016 16.9 0.7 1 23 684 706 684 706 0.98 16 17 0.064 6.6 8.7 4.9 2 23 713 735 713 735 0.97 17 17 0.0016 0.17 13.7 1.4 1 23 742 765 742 765 0.96
Sequence Information
- Coding Sequence
- ATGTGCGAGAATTGCGGCAAAGAGTTTGCTTCAATGAAAGATTTAAAAGCTCATTCCGTGGTACATACCAAAGAGAAAAATCATGTTTGTAGAGTGTGTAAAAAAGCCTTTACTCAAAGGTCACCTCTCAAAACTCATTTTGTGAAGAAGCATCCTTTGGAAAAATTtcacCTCAGAGACCATGATTACCATCTGAAAGTGTTGGCACCagcatttaataaatttctcaGCTGCCCAAAATGTAATCAAATTATACCCGCTGGCAAAATGACTTACCATTTACAATGGCACCGAAATCGTGAAAAGCCTCTGTTGAAACTTAATAACCCTAAAGAAGTTAGGGTTTTGGAACCAGAAAATAATAACTTGTTCAGATGCCCAAAATGTAATCAAGTTGTTCCCGCTACCAAAATGACTGAACATGAACAATGGCACCGAAATCAAGAAAAACCTTTGTTGAAATGTGAATCACTACTTAATAACCATAAGGAAGTTAAGGTTTTGGAACCAGAAAATAATAACTTGTTTAGATGCCCAAAATGTAATCAAGTTGTTCCCGCTACCAAAATGACTGAACATGAACAATGGCATCGAAATCAAGAAAAACCTTTGTTGAAATGTGAATCATTACTTAATAACCATAAGGAAGTTAAGGTTTTGGAGCCagaattttataactttttcaaCTGTCCAAAATGTAATCAAGTTCTTCCCGTTAGCAAAATGACTTACCATTTACAATGGCACCGAAATCGAGAAAAGCCTTTGTTGAAATGTGAAACATGCGGAAAGGAGTACGCAACTCGAAAGACACTTGGGCAACATATAGACACCCATCACAAACAGCTCCGTTTTCCCTGCGAAATGTGTGGAAAAGTTCTTATTTCCAAACCGAGTTACCGGAACCACAGGCTTGTTGTGCACGATAGGGATAAGCTACGTCACTTAAAATGTTGCGAAAAgGATATAATTTGTAATCTCCTCATAATAAAAAGGAAAGGAGCTAACGGCGACGAAATTGAGTTTAAAGAAAGAATTCAAGTTCAGAAAGTAAATAACACGTTTCCTTGCTACTTGTGTGATAagactttttcaaaaaatcattGGTTAAAAAACCACATCGTGCAAAATCATACTCATGAGTACCGATTTCACTGCCAGTTTTGTAACAAAGGTTTCTATCTAGAATCAAGAAAACGTAAACATGAAAGAGCAGTTCACTTAAAGCTAGTACCATATAAATACAAAAAGAAGGAGAAAAAGGATCGATTTACGTGTTCCTATTGCGGTTCAAGaaATGACAACAAACAATATACTTATGTCATAACTGAAGAAGAGGAAGAGGAAATAATTCAAGACATATTTGGAGATCATGACGATGCATCGCAAAGCCCCAAACCTGAAAAAATAGTTTGGTCCTGCGGTTATTGTGACGAGGCGGTTTATTCTAAGAAACCCAAGCTCTTGGAGCACATTGCTCATAATCATACCCACGAGTATCGCTTCTTCTGTGACTTTTGTGATCAGGGGTTTTACTTTGATGGACGAAGACGCGACCACGAAAATAAGATTCACAAAAAAATCACCTCTCAACCAAAAAAGGCGAAGGAAGCCAAATATGCTTGTACAATGTGCGATTTGAAATATAACTGCAACTCGCATCTTCAAGACCATATGGTAAGAGTGCACACGAAAGATTTCCGTTTCTTCTGTGACATCTGCGGAAAgggattttatttatattcgaGAAAACTCAAACACATCAGACAGAAACACGATCCAGAAAAGACAATAAAGAGACGTCCTCAGAGTAAGTTACATGAGCAATTCGTGAATAAGAACGCTTATCGAGATTTCGAACCAGCCGAAGATGGTGGTGTCCATTGCCCCGTGGAAGGATGTGGAAAAGTAATTTCAAGAAATAATTTGGGTGTTCACTTGGACACCCATGAAAATCAAAAGTATGTCTGTGAATACTGCTCGAAAGTATACACCCACTATCCATCTTTGGAACGCCATGTGAAAACTCATCAAGAGGGGGTAAAAACTTTTCCTTGTGACGTATGTAACAAGGTTCTCACTACCCATGCGAATTTAGTTTATCACAAACGGATCCACACCGGGGAAAAGCCGGCACAATGTGAACATTGTGGCCAAGGCTTCACTTGTACCAGGGACTTGAACGTCCATCGAAGACGACAGCATCAAGATATGCCAATGAGATACGCCTGTACCACTTGCGAGAAGAGTTTTATGACATATGGACGTCTTAGACAACATTATGCAACGTATCATCCTGATGATAAGGTATTTAACCAGGCTCCACACAGAGCCACTGCAAACATAGGAAGAGTATTTTATGTTTCGGATATCTATTCTTGGACGGGAGAAGACAATATGATGTTGCTAGGGTCTACAGCCAATTAG
- Protein Sequence
- MCENCGKEFASMKDLKAHSVVHTKEKNHVCRVCKKAFTQRSPLKTHFVKKHPLEKFHLRDHDYHLKVLAPAFNKFLSCPKCNQIIPAGKMTYHLQWHRNREKPLLKLNNPKEVRVLEPENNNLFRCPKCNQVVPATKMTEHEQWHRNQEKPLLKCESLLNNHKEVKVLEPENNNLFRCPKCNQVVPATKMTEHEQWHRNQEKPLLKCESLLNNHKEVKVLEPEFYNFFNCPKCNQVLPVSKMTYHLQWHRNREKPLLKCETCGKEYATRKTLGQHIDTHHKQLRFPCEMCGKVLISKPSYRNHRLVVHDRDKLRHLKCCEKDIICNLLIIKRKGANGDEIEFKERIQVQKVNNTFPCYLCDKTFSKNHWLKNHIVQNHTHEYRFHCQFCNKGFYLESRKRKHERAVHLKLVPYKYKKKEKKDRFTCSYCGSRNDNKQYTYVITEEEEEEIIQDIFGDHDDASQSPKPEKIVWSCGYCDEAVYSKKPKLLEHIAHNHTHEYRFFCDFCDQGFYFDGRRRDHENKIHKKITSQPKKAKEAKYACTMCDLKYNCNSHLQDHMVRVHTKDFRFFCDICGKGFYLYSRKLKHIRQKHDPEKTIKRRPQSKLHEQFVNKNAYRDFEPAEDGGVHCPVEGCGKVISRNNLGVHLDTHENQKYVCEYCSKVYTHYPSLERHVKTHQEGVKTFPCDVCNKVLTTHANLVYHKRIHTGEKPAQCEHCGQGFTCTRDLNVHRRRQHQDMPMRYACTTCEKSFMTYGRLRQHYATYHPDDKVFNQAPHRATANIGRVFYVSDIYSWTGEDNMMLLGSTAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -