Pcer020475.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000481.1:834468-842561[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 2.7 9.9 2.8 1 23 59 81 59 81 0.98 2 18 6.6 6.8e+02 2.3 5.9 3 23 92 112 91 112 0.95 3 18 1.6 1.6e+02 4.3 3.4 1 23 117 139 117 139 0.84 4 18 2.2e-06 0.00022 22.8 1.7 2 23 146 167 145 167 0.96 5 18 0.00028 0.029 16.1 1.7 1 23 173 196 173 196 0.95 6 18 0.00063 0.065 15.0 8.9 1 23 202 225 202 226 0.96 7 18 0.24 25 6.9 0.5 2 23 232 254 231 254 0.91 8 18 0.014 1.4 10.8 1.5 3 23 264 284 263 284 0.97 9 18 0.00016 0.016 16.9 1.7 1 23 360 382 360 382 0.97 10 18 0.02 2 10.3 0.1 1 23 460 482 460 482 0.96 11 18 0.078 8 8.4 0.7 1 23 487 513 487 513 0.95 12 18 0.04 4.1 9.3 2.9 1 20 516 535 516 537 0.92 13 18 0.00047 0.049 15.4 0.7 1 23 550 572 550 572 0.99 14 18 0.0012 0.12 14.1 0.4 1 23 577 600 577 600 0.97 15 18 0.00091 0.094 14.5 0.0 1 23 628 650 628 650 0.96 16 18 0.0055 0.56 12.1 4.5 1 21 655 675 655 676 0.96 17 18 1.7 1.7e+02 4.2 3.1 2 23 695 717 694 717 0.92 18 18 0.013 1.3 10.9 0.4 1 21 750 770 750 771 0.93
Sequence Information
- Coding Sequence
- ATGAGTATGACAGAGCCCAAAGAAAATTCGATAAAAACAGAGCGCTTCGAATCTTCTAAAGAAGAAGAGACAGAAAGAATTGAGACACTTGATAATGTTACAGTTAAAATAGAACCCCTTCTAGAAAATGTACTTTATGATAGtattaaaactgaaaaaaatggCAAACCAATATTTACGTGTAACCAATGTACACATTCCTTTGAGCACATTGAGCTGTATGAGTTACACATCTCTATTCATAATCAAACAGCTTCTACTCAATCAAAACATTGCCCTTGCTGTAAGAGGCAATATAAACAGATAGATAAGTATACCACACATATTCAAAAACATCTTGAAAAATACTATCATTGTCCTTATTGCagtcaagttttttttaaccacAACATATTTAGCCAACATGTTTTAGAACATAAAAGAAATGGGGCTCTCTGTTGTCCATATTGTGGAAAaacatttacaatacaaaaGTCACTCACCATGCATATAAGAGTACACACAAACGAGAGGCCATATGAGTGTGACAAGTGTTTAAAACGATTTAAACAGATAAGTTCTTTAAGAACCCATAAACAACTAATTCATTCTGAAGGTAATCCTCATGAGTGTGAAGTTTGTCACGGGATGTTTTGTACTAAATCAAGTTTGAGGCGCCACATGAAACGACTACACCACACCGGAAGGACAATTTCTTGTAAACCTTGTGGGTTAACTTTTCTTAACaagGATTTATTTAACAAACACCGAATGGaagaccacaaaaaattatccGGATTTTTTGAGATATGTCCAGATTGCAATGAGGAGTTTTTTACTTATCGAGAGTACTATCATCATAAGAAAATTCACATATCTAACAAAACGgcgaaagaaaaagaaaagaaaggaACTCCTGAGcttcaAAATGATTTGAATACTGGGAAAGAAGAAGAAATACTGCTCCCACTCAATGAAAAAACAGAAATATGCTGGCTATGCGGTGAAAATGTAATTTCCAAATTGTTTTTAGAACATAAAAATGAACATTTGCTCATGACGTCAGAGGAAATGGCAGAATGTATGGAAACAAAAAAGTTTCCATGCAAAACgtgtaacaaaatatattactcAAAGAAATCTCTACTCAGTCATATGGACTCGCATATGGAAAAAGTATATCAGTGCAGCAAAGAATGTTCTACACAGCATTTGTTTTCTTATAACGGATTGAAACGGCACGAACGCAAGTTCCACGGAGCGGCCAGGGCACCTAGGAAGATGACCAAGTGCTTCCTATGCGGTATAGATATAATACATATCAATTATAGTCAGCATCTAAATCAACACCTGCAGACTACTACGGCGGaactttcaaaattcaaaatgagaaaaaaatatcCCTGCAAGCAATGTACGATGGTTCTACCTTCAAAGGGCTTTTTAATACGACATGCAGCTTCCCACATGCCGAAGCAGTACATGTGTGAAAAGAATTCGGGATGCAATAGAGTTCTTTTTTCCTACATGGGATTGAGGGCTCATTATCGCACTTTTCACGATGAGTTCGCCTGTAAAGTTTGTAAGAAGACCTTTACGGGTTTGCCGAAGTTTAAAGCTCACCACCATAAGAGCGATTACGCATCGAGTAAATTcggaaagaaaatatttaaatgttccTGGTGTTCTGCTAAATTTTCCAACCCGATGGCGATAACACAGCATTACAGAACGCACAAGATTTCAGATTTCAGttgtcGCATTTGCGACAAAAGATATCCCATCGCAACcgatattaaaaaacatatgaacaagatacacaaacaaaaatttactACAGAAGATTGCTATCGATACCTGGTTAACAAGGTAGATACTTCCGATTCGCACATCGAGGAAGCGTTTGTTTGTGACTGGTGTAAAGTTGGTTTCAGTACAGAAGAAGCTTTAACAAAACATGCCGAAATACACTCTGATAATCGATATCAATGTAAAAAGTGTAAAACGTGTTTTACAGATTTTGCTAAATATGccagacatttaaaaaataacgtcTGTGTACGATGGGTGGTAGAAGCCCTAATGCCTGAGATAAAAGAGCTAAAATGCATTTACTGTCACGAGACGTTTGACACATATTTCGATACTAGCAAGCACATTACAAAGACTCATCTGAAAGAAGCATATTCATGTAGATTTTGTGATTCGAGCCACGCAGTTGAGTCACTACGAAGTCATCTAGTAAAACGACATTCAAGAAGAAAGAAATACTTATGTGCCGGATGCAACATTTCCTTTGTGACTCTGTCTAAATATTTGCATCATAGAAGATGGTGCGTTGAATGTCCGCTGATACAATGTGAACGTCCGAAACGTCAGGAATTTATAAGTCAAAATAATATTTCGATTGGTGATGATACTCAAGAAGACATAGTGGATGTTCCAGAAACAGTTTTAGTAAATGAATTTGGCGATATAATCGTACCAGAACATAGTACTAGTTCCGTTTTAGATGTAAGCGTAATGGATGTGGATTGTCTAGAAAATATAGaataa
- Protein Sequence
- MSMTEPKENSIKTERFESSKEEETERIETLDNVTVKIEPLLENVLYDSIKTEKNGKPIFTCNQCTHSFEHIELYELHISIHNQTASTQSKHCPCCKRQYKQIDKYTTHIQKHLEKYYHCPYCSQVFFNHNIFSQHVLEHKRNGALCCPYCGKTFTIQKSLTMHIRVHTNERPYECDKCLKRFKQISSLRTHKQLIHSEGNPHECEVCHGMFCTKSSLRRHMKRLHHTGRTISCKPCGLTFLNKDLFNKHRMEDHKKLSGFFEICPDCNEEFFTYREYYHHKKIHISNKTAKEKEKKGTPELQNDLNTGKEEEILLPLNEKTEICWLCGENVISKLFLEHKNEHLLMTSEEMAECMETKKFPCKTCNKIYYSKKSLLSHMDSHMEKVYQCSKECSTQHLFSYNGLKRHERKFHGAARAPRKMTKCFLCGIDIIHINYSQHLNQHLQTTTAELSKFKMRKKYPCKQCTMVLPSKGFLIRHAASHMPKQYMCEKNSGCNRVLFSYMGLRAHYRTFHDEFACKVCKKTFTGLPKFKAHHHKSDYASSKFGKKIFKCSWCSAKFSNPMAITQHYRTHKISDFSCRICDKRYPIATDIKKHMNKIHKQKFTTEDCYRYLVNKVDTSDSHIEEAFVCDWCKVGFSTEEALTKHAEIHSDNRYQCKKCKTCFTDFAKYARHLKNNVCVRWVVEALMPEIKELKCIYCHETFDTYFDTSKHITKTHLKEAYSCRFCDSSHAVESLRSHLVKRHSRRKKYLCAGCNISFVTLSKYLHHRRWCVECPLIQCERPKRQEFISQNNISIGDDTQEDIVDVPETVLVNEFGDIIVPEHSTSSVLDVSVMDVDCLENIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -