Pcer031719.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000925.1:188393-199593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1e-06 0.00011 23.7 0.2 1 23 228 250 228 250 0.97 2 14 8.1 8.3e+02 2.1 1.9 3 19 312 328 310 332 0.88 3 14 0.24 24 6.9 4.7 1 23 338 361 338 361 0.92 4 14 5.9e-05 0.006 18.3 2.1 1 23 371 393 371 393 0.98 5 14 0.00047 0.048 15.4 1.0 3 23 400 420 399 420 0.98 6 14 0.00021 0.022 16.5 1.6 1 23 426 448 426 448 0.97 7 14 8.4e-07 8.6e-05 24.1 0.4 1 23 454 476 454 476 0.98 8 14 0.008 0.82 11.5 0.1 3 22 484 503 482 503 0.95 9 14 0.61 63 5.6 1.6 1 23 605 628 605 628 0.95 10 14 0.098 10 8.1 1.1 1 23 635 657 635 657 0.96 11 14 0.37 38 6.3 2.7 1 23 661 685 661 685 0.92 12 14 0.00016 0.016 16.9 0.3 2 23 692 713 692 713 0.98 13 14 0.009 0.93 11.4 2.9 1 23 719 742 719 742 0.93 14 14 3.8e-05 0.0039 18.9 0.3 1 20 753 772 753 773 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAACCCAAGACATGCCCAATAACATTCTTTACACCGATAGTAGAAATTGCAGAAGCCCCACCTCAAAAGGAACCCCAAACCAAAGATAagtctaaaaataaagaaactaaaCCAGAAATAGTTGAAATAAAAGACGAAAAAGATGAAACGCTAGTTAAACAAgaggaagaaaaaaatatttcggaagaagaaacccaaaatatagatataaaagtggaggacgATACACAAGATACCAAAGATGAAGatgttaaagtaaaaattgaacCAAAACAGGAAGCAAGTACCAAAGATGTAGAAGAAGCTGTAAACAAAAGAAAGCGTGGTAGGCCAAAGAAATCAGCGGCGGGCCAGGCAGTCAGAAAAAGTAAGAGGAcatataataagaaagttaaagTTGACGTTGATGTTGACGATcctattaaaaaagaaaagaaacctAGAAAGCCTAGGAAGCAACGCTCACCAAAGAAAAAACCACCTGAAACAAACGAAATTGATCTAAAATTTGAGGATGAACTTTTAATTTCTCCTGAACATCTAGATGAAAACAAAGTCATAAAATGTCCCATTTGTAAGGATGAAAGAGAGTGGAACTTGAAAGATGTAAAAGAGCACTACAAAAAGGAACATCCAGGCAAAAGGCTTAGAACATCCAGGTTCTTTGGAGACCTCCATCCTTGTGATATATGCGGCAAAGAATTTAAAAGTGCAGGGAGTCTAAGGGACCACATAGAGACTCACAGTAACTATTTTTATTGTGACGTTTGCAATCATTCaacgaaaaaaattttagatcATGTGCTCCATCTTAGGATCCATCACCACATGGGTATCTTTCAGTGCTTAATGTGCGAATTTAACACGTTGGAGATAACGAAGATAAATGAGCACGTGAATCACCACGATGATTTGTTAAAGTATTGGTGCGATTCCTGCAAAAAATCGTTCCAGATCCTGCAGCACTTTCAGGAACACGATAATTACCACACGGGTCTAAAGCCCTTTGACTGTGAGTTTTGTGGAAAGTGCTTTTTGTATTCCCGATATCTCCACGCCCATAAAATTAACATGCACAAAGAAGAAATGAACTGTCCAAGCACTTATGAATGTGTCATCTGCAACAAAGTTTATCAGCATCGAAATAGTTTAAAGCTGCATATGAATTCGCATACAGGGAATTTTGCGATATGCGATATTTGCGGGAAAACTCTGTCTAGTAAGGAGAAATTAAAGTTTCATTTGAGGACACATACTGGATATAAACCTTACAGttgtcAATACTGCGGAAAATGCTTTACCAAAAAACCGATCCTAGTCGAACACGTCCGAGTACACACGGGCGAAAAACCCTACATTTGTGATTACTGTACCAAAGGGTTCTCTCAGAGAAGCAGCTTAGTGATTCACATGAGAGGCCATACCGGCGAGAAGCCATATGGATGTCAATTTTGTGGCAAGGGATTCGTAGCCAAAGCTATGTTAAacattcatttaaaaacttgtaaGGGCTATTTTCAGGGTGAAAATATGTTATATAACTATAATAGACAAGATCAACTTTGCTTGAGAGTAGAGGAAAATGaagaagaaattttaatacACTTTATAGACGACGATAATGATGATAATCAAGAATATCTTGATGTCATCGTGAAAAATGAACCTTTGAGGGCGATAAACGAAGAACAACGTCTTCAAATTCTAGATTCAAAAAACCAATCAAAACTTATAAAGAAATATCTATGCAACGTTTGCGGGTGTTATTTTCAGCTTATCAGACGCCATCTTGAAAGTCACGGTCCTCATAACTGCATGGATTGTCTCATTAATTTTAAGACAGAAGAATTGTACGGGCACCACCTTATCACAGTCCACGATAACGGTGGTGAACGGTATCCTTGCGACCTTTGTACTTTAACGTTTTGTTCCGTCACCACAATGGCTGTCCATAGATTTATCCATACCAGACAATATAGCTGCCCCCTTTGTCATTTTACCACCAAAGGGCGGTCTAGGTACTCCTTGGTAAACCACATAAAGAGACACGAAGGAAACTATGCTGAGAAATGCGAGATTTGCGGTCGTGGGTTTATGGACAAAAATATGCTGTCCTATCATATGGAGATGCACGAGGCGATTCCGAAATATGAGTGCGAGTTTTGCAAAAAGAAATTTACAGTTAAACGGTACTTGGATGTCCACAAAAGTTACAACCATAAAATGGAAATGTATGGAATAGAGGAGATGTATCAGTGCGAAGTTTGTGGACGAAGCTTTACTTTCGAAAAAAGTTTAGTTCGGCATTTAAGTTGTATTCATAAAATTGGAAAGGATAGAACCAGGGAATGCCCGGTAAGATACATACACATCAATCACCAAAACTAA
- Protein Sequence
- MEQPKTCPITFFTPIVEIAEAPPQKEPQTKDKSKNKETKPEIVEIKDEKDETLVKQEEEKNISEEETQNIDIKVEDDTQDTKDEDVKVKIEPKQEASTKDVEEAVNKRKRGRPKKSAAGQAVRKSKRTYNKKVKVDVDVDDPIKKEKKPRKPRKQRSPKKKPPETNEIDLKFEDELLISPEHLDENKVIKCPICKDEREWNLKDVKEHYKKEHPGKRLRTSRFFGDLHPCDICGKEFKSAGSLRDHIETHSNYFYCDVCNHSTKKILDHVLHLRIHHHMGIFQCLMCEFNTLEITKINEHVNHHDDLLKYWCDSCKKSFQILQHFQEHDNYHTGLKPFDCEFCGKCFLYSRYLHAHKINMHKEEMNCPSTYECVICNKVYQHRNSLKLHMNSHTGNFAICDICGKTLSSKEKLKFHLRTHTGYKPYSCQYCGKCFTKKPILVEHVRVHTGEKPYICDYCTKGFSQRSSLVIHMRGHTGEKPYGCQFCGKGFVAKAMLNIHLKTCKGYFQGENMLYNYNRQDQLCLRVEENEEEILIHFIDDDNDDNQEYLDVIVKNEPLRAINEEQRLQILDSKNQSKLIKKYLCNVCGCYFQLIRRHLESHGPHNCMDCLINFKTEELYGHHLITVHDNGGERYPCDLCTLTFCSVTTMAVHRFIHTRQYSCPLCHFTTKGRSRYSLVNHIKRHEGNYAEKCEICGRGFMDKNMLSYHMEMHEAIPKYECEFCKKKFTVKRYLDVHKSYNHKMEMYGIEEMYQCEVCGRSFTFEKSLVRHLSCIHKIGKDRTRECPVRYIHINHQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -