Pcer042398.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010002111.1:8615-12917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 2.4 10.1 0.7 3 23 158 178 157 178 0.98 2 11 0.33 34 6.5 0.0 2 23 184 206 183 206 0.95 3 11 0.0049 0.5 12.2 0.9 1 23 214 237 214 237 0.94 4 11 1.1 1.2e+02 4.8 4.4 1 23 257 280 257 280 0.92 5 11 0.016 1.7 10.5 0.0 3 23 285 304 284 304 0.97 6 11 0.013 1.3 10.9 4.9 2 23 310 332 309 332 0.90 7 11 4.5e-06 0.00046 21.8 0.5 2 23 339 360 339 360 0.97 8 11 6.6e-05 0.0067 18.1 2.1 1 23 366 389 366 389 0.97 9 11 3.4e-05 0.0035 19.0 2.0 1 23 395 417 395 417 0.97 10 11 3.8e-05 0.0039 18.9 0.4 1 23 423 446 423 446 0.97 11 11 7.8e-05 0.008 17.9 0.1 2 23 455 477 454 477 0.96
Sequence Information
- Coding Sequence
- aTGGAGGAAGGTCACTTTTGCCGATTGTGTTTAACTTCTTCAGTGGTGTATTATtccttgtttaaaaataatggcAGGGAAATGGTGTTTGCTCTTACTAGTATAGAGgtTAGTGAAGACGATCTTTCCACAGAATCTTGTACAAAATGTTGGCTTGATCTAAAATTAGCCTATTTCATACAGCAATGTTTTATTCAGGCGGAtacgaaacttaaaaatactcTTATTGAACCAGACATGAAAGAAGAAACTGAAGATTCGTTACAAATGAAAAGTGAGGAGGAGGAGGATGAAGATAATGATATTACAACACAAGATCAAGGTATTAAAAAAACGAACAATGATAATTTGGAAGACAATGATAATAGTAAGGATTATGATATTACAGAGGACAATGATAATGTATCAGGTGAAGATTGTGAACTTATTTACATTGAAACGGAGGAAGATGTTGTAAAAAAACCAAGTTTGTGTTCCATTTGTGGAATGGAATGTGAAGATGAAATGAAGTTGTATAATCACATTACCACTCACTATAATGGCCCCCAGATGTGTGATGAATGTTCAGTGGGTTTTCCAGATATTCCTGCTTATCGAAGTCACTTTCAGACAGTTCATCCTAAACTGTATATGCAAACCCATATTTGTGGGATATGTCAATTATCATTTAAATATAAGTCATTGTATGATATGCATTTAGCATCACTACATTCTAAAACGGCTGCAAGTCGTAAAAGAAAGAGACCCACTCTTGACGTTGATGGTTCATATGAGTGTGATACCTgttgcaaagtttttaaaagtaaaaggtTTTATGATGTACATCTGTATAATAGTCATACTAAAAAGGACTGTCCTATTTGTGGAGCAATGATAACAAGCCCGAATCTGAGTAAACACATAATAACTCATCAATCTGAACCTACAGTATGTGACGTATGTGGAATTACTTGCAAGCACAAGGAGAGTTTAAGATGGCACAAGTATCATTCCCACTCGAACCGAAAAAAGCGGGTTTGCGAAATATGTGGacaagaatttaaaaagttgtataatttGAAAGTTCACCTGAAAAAGCATTCTGGTGAAAGAAACTTTTCTTGTGAGACCTGcagtaaaagtttttttacacaaTATCGACTAAATATCCACATTAGGTTAACTCACTTAAAAGAACGTTTACATATTTGCAAGTATTGTGGTCAAACGTTTTCCAAAAAGACTGCCATGCAAATTCACGAGAGaattcACACCAATGAGTTGCCGTATATTTGTGAAGTTTGTGGCGTTGGATTTAGACAGAACGTGACTTTGAGATCTCACAGGAAATCGAAACAtaatataattgaaaataaaaccaCAGAGTGTCCAGAatgcaataaaatgtttaaggATGGTTGGGCGTTACTGACTCATACACGGTCTGTACATgcataa
- Protein Sequence
- MEEGHFCRLCLTSSVVYYSLFKNNGREMVFALTSIEVSEDDLSTESCTKCWLDLKLAYFIQQCFIQADTKLKNTLIEPDMKEETEDSLQMKSEEEEDEDNDITTQDQGIKKTNNDNLEDNDNSKDYDITEDNDNVSGEDCELIYIETEEDVVKKPSLCSICGMECEDEMKLYNHITTHYNGPQMCDECSVGFPDIPAYRSHFQTVHPKLYMQTHICGICQLSFKYKSLYDMHLASLHSKTAASRKRKRPTLDVDGSYECDTCCKVFKSKRFYDVHLYNSHTKKDCPICGAMITSPNLSKHIITHQSEPTVCDVCGITCKHKESLRWHKYHSHSNRKKRVCEICGQEFKKLYNLKVHLKKHSGERNFSCETCSKSFFTQYRLNIHIRLTHLKERLHICKYCGQTFSKKTAMQIHERIHTNELPYICEVCGVGFRQNVTLRSHRKSKHNIIENKTTECPECNKMFKDGWALLTHTRSVHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -