Pcer004487.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus cervinus
Gene Symbol
-
Assembly
GCA_935413225.1
Location
CAKXYS010000081.1:22010-29484[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5.7 5.8e+02 2.6 1.0 2 23 177 199 177 199 0.95
2 13 3.5 3.5e+02 3.2 1.5 2 23 342 363 341 363 0.95
3 13 0.0007 0.072 14.9 4.2 1 23 369 391 369 391 0.98
4 13 2.6e-05 0.0026 19.4 2.9 1 23 395 417 395 417 0.99
5 13 5.7 5.8e+02 2.6 1.5 2 12 468 478 468 489 0.68
6 13 1.1e-07 1.1e-05 26.8 2.8 3 23 501 521 500 521 0.99
7 13 0.15 15 7.5 0.8 1 23 527 549 527 549 0.97
8 13 4.9e-07 5e-05 24.8 0.4 1 23 555 577 555 577 0.98
9 13 2.4e-06 0.00025 22.6 2.8 2 23 583 604 583 604 0.98
10 13 7.4e-06 0.00076 21.1 5.2 1 23 610 632 610 632 0.99
11 13 0.007 0.72 11.7 4.8 1 23 638 660 638 660 0.98
12 13 0.00052 0.054 15.3 3.0 1 23 666 688 666 688 0.97
13 13 0.00025 0.026 16.2 4.1 1 23 699 722 699 722 0.97

Sequence Information

Coding Sequence
ATGGACCCAGAAAACGATGAAAACTTAGTTAAAATTACAGATATTTGTCGGGCCTGCCTATCTAGAACAGAGACCATGAAATTTCTACTAGAAGACAGCGAAGAAATTCTTAGTTTACTCTCTAAGTTCGTTACTGTCTCTAATTTAGAGATAGAAATTGGTTTTAAATATCCTTCATACCTTTGTACTATCTGTGAAGAAAAAATTCTTAGTTCCTACGAGTTTCAACAACAATGCCAAAAGTCCAATGATTTAATTAAAGAATACCTGGAGGTATTTCTAAAACAAGATACAATTCCCTCAGAACCAGAGTCTAAAATTACTCTAACCAACCTAAATACTTCAGAAGAACGAAATATTTCTCTGGAGCTACATAATACTACAGATACTGTGCAACTGATATATGAAGAAATTTCCAACCCTCCTTATGAAGACAGCAAAGAATATAAAGATGAATATGATGAAAAATTTCAGGAAGATCTAAGccaagctattttaaatttaaaagaaaaatatatgggTGACAATGAATGTGTGGTTTGTCAATATCAAGCTGAAAATCATACAACACTATCTACACATGTATCTACAAAGCATAAAggaaaaaggaaagaaaatCGAGACTTAGTTGGAGAAATAGAGACACCGAATAACACATCGCAGGAGGAGGAAAAGTATAATACATTATTAGaagagGAAATAATCATTAAAGCAGATAGTCTACCAGATGAGTTTAAAAACTTTACACCAGTAGAAGTCCCACTCAAAAATAAGACTCTTCAAAAAATGAGGTTGAAACAGTATTCTGTGGAAGATGTCAGCAAAGCTATAAGTATCTTCAAAGGAAAGTTTTACAAACAtgttaattgtattttttgtaattttactgCTGTTACGAATAGAAGTCTGTCTGTGCATGTAACTAGAGTACATAGCGAGTACAAGAATAAATGGTGTTCATCTTGTAATAAAGTTACCGATAACCAAACTAGTCATAATAAGGAAGTACATTTTGAGGATCTAAAATGTCCATTTtgtcgaaaaataaaaaataacatgggACATTTTATGGAACATCTTGCAAGTCATTCTGctgacAGACTttacaaatgcaacaaatgcatcAAATCGTTTATTTCTAAAAGGCATCTGAGGATTCATAAAGCAACACACAAGTCAGAGTTTAAGTGTGGCGTGTGTAAACAAACTTTCAAGCAAGCTTTACATTTAAGAGTTCATCTTAAAACTCATCAAAGgctCGACCAAAATAGTAGCGTCATTCAAAGCGattctatagaaataaaagttaaagAGGAAGGCAACGAGAGTAATGAAAATGACACTTTAAATTGCAGATCTGATTATGATGAAACCAAAGATGAaGCGAAAAAACCTCAAAATTATTGCAAAgattgcaataaaaaagttagaaGCTTACTCAGTCACTATCTTCAGCATCACAACAAAACAAAACCTGAAAACGCCGACAAACAGAATCTGTGTCCACACTGTGGCAAAAGATTTaggACATCATCTAAACTCACTGTACATATACGAACACATACAGGGGAATCTCCATATAAGTGCCGATATTGTGACAAATGGGTGAAAACGAGAAATATTTTGATTGTTCATGAACGTACCCATACCGGAGAGAAACCGTATATGTGTACCATATGTggaaaaagttttgCCCAATCCAGCGTGTTAAACACTCACACAAGGATCCATACGGGAAGGCCAGAACAGTGTACAATTTGCGAAAAAAGGTTTTGTCGTCCCGCCGAGTTAAGGTTACATATGAGGAAACATACAGgtgAAAAGCCATACAAGTGTCAACACTGCGGGTtaggttttaaacaaaaaagccaCCTTGTGGAACATACTAAAACTCATAACGACGACAGACCATATCAGTGTGAATTTTGTGAAAAAGCGTTTAAAAATCATGGGACTCTTAAGTGTCATCTTCAGATACATTCTGGTCAAAAACCATTTAAATGCTCGCAATGCTCTTATGCGTGTAGACAGCCTTACAGTCTTACCCAGCATATGGTTCAACATGACAATGACAAACCTCAGTTGGACTATCCTCATAAATGTGAAATATGTCAGAGGAATTTCGCTACTACAGCACATTTGACAGCTCACTATAACAGgtttcacCCCGACTTGAAAGTAAAATTCTCAGAAACCTTGGAACAACAACCAACGGACAATAACCAAATAATCAAGTCCGACACGATTAACGATCATGAAGCAAATCAAAGTGATTCAAATAATTACCAAAGATCACAGGAATCTCAAATACAGTCTAGCGAGAGTGAATTAGTTGAATCAGTTGGAAACGTGGATACCATAATTATTCAAACGGAGATTCAAGATGGTGGTGAGATAAAATACGAACCGATTGAGATTCAATTTTCAACGTTTCAACACGagttataa
Protein Sequence
MDPENDENLVKITDICRACLSRTETMKFLLEDSEEILSLLSKFVTVSNLEIEIGFKYPSYLCTICEEKILSSYEFQQQCQKSNDLIKEYLEVFLKQDTIPSEPESKITLTNLNTSEERNISLELHNTTDTVQLIYEEISNPPYEDSKEYKDEYDEKFQEDLSQAILNLKEKYMGDNECVVCQYQAENHTTLSTHVSTKHKGKRKENRDLVGEIETPNNTSQEEEKYNTLLEEEIIIKADSLPDEFKNFTPVEVPLKNKTLQKMRLKQYSVEDVSKAISIFKGKFYKHVNCIFCNFTAVTNRSLSVHVTRVHSEYKNKWCSSCNKVTDNQTSHNKEVHFEDLKCPFCRKIKNNMGHFMEHLASHSADRLYKCNKCIKSFISKRHLRIHKATHKSEFKCGVCKQTFKQALHLRVHLKTHQRLDQNSSVIQSDSIEIKVKEEGNESNENDTLNCRSDYDETKDEAKKPQNYCKDCNKKVRSLLSHYLQHHNKTKPENADKQNLCPHCGKRFRTSSKLTVHIRTHTGESPYKCRYCDKWVKTRNILIVHERTHTGEKPYMCTICGKSFAQSSVLNTHTRIHTGRPEQCTICEKRFCRPAELRLHMRKHTGEKPYKCQHCGLGFKQKSHLVEHTKTHNDDRPYQCEFCEKAFKNHGTLKCHLQIHSGQKPFKCSQCSYACRQPYSLTQHMVQHDNDKPQLDYPHKCEICQRNFATTAHLTAHYNRFHPDLKVKFSETLEQQPTDNNQIIKSDTINDHEANQSDSNNYQRSQESQIQSSESELVESVGNVDTIIIQTEIQDGGEIKYEPIEIQFSTFQHEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-